|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 34740.HMEL015781-PA |
| Preferred name | DIS3 |
| PFAMs | PIN_4,RNB,Rrp44_CSD1,Rrp44_S1 |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K12585 |
| KEGG Pathway | ko03018,map03018 |
| KEGG Module | M00391 |
| GOs | GO:0000175,GO:0000176,GO:0000178,GO:0000278,GO:0000288,GO:0000291,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004532,GO:0004540,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022613,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071025,GO:0071027,GO:0071034,GO:0071043,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0098542,GO:0098772,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1903311,GO:1905354 |
| Evalue | 7.61e-97 |
| EggNOG OGs | COG0557@1|root,KOG2102@2759|Eukaryota,38CFP@33154|Opisthokonta,3B9E2@33208|Metazoa,3D2PB@33213|Bilateria,41WC0@6656|Arthropoda,3SJW3@50557|Insecta,4437V@7088|Lepidoptera |
| Description | Rrp44-like cold shock domain |
| COG category | J |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6241.t1.start1 | Ggra6241.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000879_pilon 126702..126704 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6241.t1.intron1 | Ggra6241.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000879_pilon 127201..129443 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6241.t1.stop1 | Ggra6241.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000879_pilon 130619..130621 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra6241.t1 ID=Ggra6241.t1|Name=Ggra6241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=559bp MERRGTSTATQGGGTGSGFVVPLQIKNERANGKKMVSDILNSAREWVAKR ELSLEENEHLENRYSHDEVHFRLLKRRLEQILERRKQAFRSCIVGDNVSA NPDDGRSSGFQNSPLSKAVNTRQCDDLRRGGNASSSKSIPIKPFVPALPK DIESVIEIWNDGIVSQVQTDSARKFPERKAKAGIRGKRYYQGTHHPSTYD VTEATVTVCLEPKDKSKRTQVLIVGRENRNRSIDGDVVVLELLPKSKWQF PSNLAIDQDEADVESDSEDTDVRVPDSRPHKQRPAVQGREPRPTGRVVAI AQRNWRPYCGTISEKSLRGGDTALCIPMDRNVPKIRVRSRRIPQLLGKRV LIIIDKWDRTSIHPSGHIVREIGPSEEKEAETEVILIENGIPTRKFSDAA MACLPNESWKVTEEHCKTQWDLREMTICIVDPPGCTGIDDALHFRRVGAD EVEVGVHIAEVTAFVGHGTVLDNEAAERGCTVYVVDRRIEMLPGLLSGNF CSLRGGEERLSFSVLIRMDNEGNVKQREFGRSVIKSKAALTYEMAQNRID DARKMTQR* back to topspliced messenger RNA >Ggra6241.t1 ID=Ggra6241.t1|Name=Ggra6241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000879_pilon:126702..130621+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAAGACGTGGTACTTCGACTGCCACTCAAGGAGGCGGTACTGGAAG TGGGTTTGTAGTACCACTCCAGATCAAAAATGAAAGAGCCAATGGCAAGA AAATGGTGTCCGATATATTGAATTCGGCGCGAGAATGGGTAGCTAAGCGT GAACTGTCCCTGGAGGAGAACGAGCACCTTGAAAATCGATATAGTCATGA TGAGGTTCACTTTCGGCTTTTGAAGCGGAGGCTGGAACAGATTCTGGAGA GAAGGAAGCAAGCATTTAGAAGCTGCATTGTGGGAGACAATGTATCGGCT AACCCTGATGACGGTCGGAGTAGTGGGTTTCAAAATTCTCCATTATCTAA AGCAGTGAACACTAGGCAATGTGATGATCTGCGTAGGGGTGGGAATGCCA GTAGTTCAAAGTCAATTCCGATTAAGCCGTTTGTGCCTGCCTTACCAAAG GACATTGAATCAGTCATTGaaatatggaacgatggtattgtgagtcaggT GCAAACTGACTCAGCGAGGAAATTCCCAGAAAGGAAGGCGAAGGCGGGGA TACGCGGAAAACGTTATTATCAAGGGACGCATCATCCCAGTACCTACGAT GTGACCGAAGCCACCGTCACTGTATGTCTCGAACCCAAGGATAAGTCAAA GAGAACGCAGGTTCTCATAGTTGGACGGGAAAATCGGAACCGCTCCATTG ATGGGGACGTGGTTGTTCTTGAATTGCTTCCAAAGTCGAAGTGGCAATTC CCGTCTAATCTGGCCATCGATCAGGACGAAGCTGATGTAGAAAGCGATTC TGAGGACACTGATGTTCGTGTTCCCGATTCTCGTCCGCACAAACAGAGAC CTGCAGTTCAAGGCCGCGAGCCACGGCCCACTGGTCGAGTTGTTGCTATT GCTCAACGAAATTGGCGTCCATACTGTGGAACAATTAGTGAGAAAAGCCT TCGCGGTGGTGATACTGCACTATGCATACCAATGGATCGCAACGTTCCAA AGATCAGAGTGCGTTCCCGGAGAATACCTCAGCTGCTAGGTAAGAGGGTT TTGATCATCATCGACAAATGGGATCGTACTTCAATTCATCCCTCGGGGCA CATCGTACGTGAAATCGGACCCAGTGAGGAGAAAGAAGCCGAGACAGAAG TTATATTGATAGAGAATGGAATTCCGACCCGCAAGTTCTCAGATGCTGCC ATGGCATGCTTGCCCAATGAGTCATGGAAAGTAACAGAAGAGCACTGCAA AACACAATGGGATTTGCGTGAAATGACGATTTGCATCGTAGACCCTCCTG GTTGTACAGGTATAGACGATGCGTTGCATTTTCGTCGTGTAGGCGCAGAT GAGGTGGAAGTCGGCGTCCACATCGCGGAAGTTACTGCATTTGTCGGTCA CGGAACTGTGTTAGACAATGAAGCAGCCGAAAGGGGGTGTACTGTGTATG TTGTTGATCGCAGAATAGAAATGCTGCCTGGTCTTCTTTCTGGAAACTTT TGTTCTCTCAGAGGAGGCGAAGAGCGCCTCTCATTTTCAGTTCTGATACG CATGGATAACGAGGGCAATGTCAAACAGAGAGAATTTGGAAGATCTGTAA TCAAATCGAAAGCTGCATTGACGTACGAGATGGCACAAAACCGCATTGAT GATGCAAGAAAGATGACGCAAAGATGA back to topprotein sequence of Ggra6241.t1 >Ggra6241.t1 ID=Ggra6241.t1|Name=Ggra6241.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=559bp
MERRGTSTATQGGGTGSGFVVPLQIKNERANGKKMVSDILNSAREWVAKR ELSLEENEHLENRYSHDEVHFRLLKRRLEQILERRKQAFRSCIVGDNVSA NPDDGRSSGFQNSPLSKAVNTRQCDDLRRGGNASSSKSIPIKPFVPALPK DIESVIEIWNDGIVSQVQTDSARKFPERKAKAGIRGKRYYQGTHHPSTYD VTEATVTVCLEPKDKSKRTQVLIVGRENRNRSIDGDVVVLELLPKSKWQF PSNLAIDQDEADVESDSEDTDVRVPDSRPHKQRPAVQGREPRPTGRVVAI AQRNWRPYCGTISEKSLRGGDTALCIPMDRNVPKIRVRSRRIPQLLGKRV LIIIDKWDRTSIHPSGHIVREIGPSEEKEAETEVILIENGIPTRKFSDAA MACLPNESWKVTEEHCKTQWDLREMTICIVDPPGCTGIDDALHFRRVGAD EVEVGVHIAEVTAFVGHGTVLDNEAAERGCTVYVVDRRIEMLPGLLSGNF CSLRGGEERLSFSVLIRMDNEGNVKQREFGRSVIKSKAALTYEMAQNRID DARKMTQR* back to topmRNA from alignment at tig00000879_pilon:126702..130621+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra6241.t1 ID=Ggra6241.t1|Name=Ggra6241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3920bp|location=Sequence derived from alignment at tig00000879_pilon:126702..130621+ (Gracilaria gracilis GNS1m male) ATGGAAAGACGTGGTACTTCGACTGCCACTCAAGGAGGCGGTACTGGAAG
TGGGTTTGTAGTACCACTCCAGATCAAAAATGAAAGAGCCAATGGCAAGA
AAATGGTGTCCGATATATTGAATTCGGCGCGAGAATGGGTAGCTAAGCGT
GAACTGTCCCTGGAGGAGAACGAGCACCTTGAAAATCGATATAGTCATGA
TGAGGTTCACTTTCGGCTTTTGAAGCGGAGGCTGGAACAGATTCTGGAGA
GAAGGAAGCAAGCATTTAGAAGCTGCATTGTGGGAGACAATGTATCGGCT
AACCCTGATGACGGTCGGAGTAGTGGGTTTCAAAATTCTCCATTATCTAA
AGCAGTGAACACTAGGCAATGTGATGATCTGCGTAGGGGTGGGAATGCCA
GTAGTTCAAAGTCAATTCCGATTAAGCCGTTTGTGCCTGCCTTACCAAAG
GACATTGAATCAGTCATTGaaatatggaacgatggtattgtgagtcaggg
tattttaccggtccgacttttgaatgacgccaagtgcagatcaaaactgc
tcttgggttattcgaataacgtatgggccaatggtggacaaaagtctgct
ttcaaaaggttgaggaagctcgttttatgtgtctctgaatttgcacctct
cactttgaatatatacgaagataatcatatatcggaatggagaggagcgt
tgcaggcttatcatgaagtctatgacatcaatggaaagcccagatgttta
acatctgtgctgaatctttacaactctaatgagctCTGACATAAGCAGTT
TGAATTGGATCATGGCGTAGGATGTTGAGAAAAGGGGATTGGTCATAAGT
ATTGTTGTTCGCGCTAGCAATTGGTATATAGTGAGGTTTTACACGACAGA
TAATTCATTAACGCGTAAGTGAATGATCGTGTTCTGTCTCATTAAGAGTT
GCTGAATTGCGTCTACAGTTTATATAACATCATCATCACGACGTGTTTTG
TTTACTTCCGTAATGGATCCCTCGTCCTATGGCTTATAACCCATACACTG
GCACGTGTGATTCAAAAAGGATGTCACGAGTGAAGGATGCAGTCAAAAAA
AGCACTGTCGACTCAAGCCTGGAAGCAGCCCCTTGACCGGTGATGCGGTA
AGCTAGCTCATGCGACTGCGCCAACGTGTTGATGTGCACTATAGCTTTAT
ACAAAACATTCACGATCACCTGCGGCGGGAAGCATTCAGTAGCCCCGGGC
TCAGAATTGAAGCCTTCATGGCACACATCGCGAGCCAGCTGCCCCACTTC
TGGATTAGAAAATTCCTGTGACAGAGTGAGCACGATCCTTGCCTTTGTAA
GGAAGGGGCGGCCACGAAGAATGTTATGTTGGTGGTAGCACCTAGGACGC
ACATTCCACACGAAGCATCGATTAGAGTTTCTCCCGGCCCACAGAACAAC
CGGTGCGATCCGGATTCGAGAAAGAGTTTTCTGCATATACCGAAAAAGTA
TGCATGAGGTGCTTGCTGGTTGTGGCTGAAATTCTAGACCGCTGCACTTG
GCACAGGATGGAGCGAAATTGGTGCTGAGACAGGCGCGACGAGTGCTACA
GTGGCAGCGCTGCATTTCCCGTTTCCGGAGACCTCTGCGCCGTGCGCGCC
ACTCGCTGTTCCTCCCGCGCGGCGCCGTCGTCGCTCGTCGTTCGAGCCAC
GGCGCATGCCTCGTTAGTCATATTCAATGCCCCACAAACCATCCCCAATT
CCCCACGAATCGTGCTCAATGCCTCGCTTTCCGTCACTATTTCCCTTTGG
TGGCCGGTGGTTGGCTGGCGCTGGTTGAATTTGCGTGCACCACGTAGGTC
ATCAGACTGGCGTTGCTCCGCTCGCCGTGCTGCGCACGCGGCACTGTGCA
GTTCGCGCATATGCGGCGTGTCGCCCCGATTGCAGCCGTATTTGTCCTGT
ACGTGCTGCACGTGTCGATCGTGTGGCGGGTTGTCGTTTCCGTGCCAATG
ATGTGGCGCCAGTGTCAGCCCTGCGTTTGTTTCGGCCAGATCTCGCGCGA
TCAGCGCACTGTGCCTGCAATGTGGAGCCTCCTCCGGTGTCACGTGTACG
TGGTGTGGGAGCCGTGTCGGGGTGTTCAGGGAGCTGCGCGCATTTTTTGA
ACGGTGTCCACTGTCCTTTTGAGCTCCGCGTGCAACGCGTCTACTCTGTG
GAGCTCTCTGCGCATTTCGCTGGCTCGCCGTCGCACGCTCGGGCTGCTCT
GCTGCCGTGAGTGTCTCCCCATGCCGCTGCGCCATCCTTCCGTGCGCATT
CTTCACCGTCGCGCTTCCCGCGATTCGCGTAGCCGCGTCTTTTTTCGTCC
CTCCCGTATGTCCTTCCTTGAGCTTTCGCTCGAGCCGCTCGCGTTCTGGC
CTTGAGCTTCGTGCTGTCTGCTGCGCCCTGCGCTTCGTCTCACGCTGTGC
CCAGCTCAGTGTGCGATCTGGATACCGAAGTCGTCTGCTCTGCGTACGAC
ATCTGTCCATGTGACTCGTCTTCCCCGCTCTCCGAGCTGTACATCTGGTA
CACGTCCTTCTCGTCCTTCATGTCCTCCTGCGCCATATCTGTGCGGCCCG
GTTTTTCTGTTACCTTGAATTTCAGGTTCTGTCCCCGGAACAGGTACAGT
AGAAGCCCCTTCATCGTGTCATATCTGAAAATCGTCTCGAAAGCCACGTT
TGCTGCCGAGCTTTTGTGAAGCCCTTTCCCACCGGCTGTCAGTGCAAACT
GACTCAGCGAGGAAATTCCCAGAAAGGAAGGCGAAGGCGGGGATACGCGG
AAAACGTTATTATCAAGGGACGCATCATCCCAGTACCTACGATGTGACCG
AAGCCACCGTCACTGTATGTCTCGAACCCAAGGATAAGTCAAAGAGAACG
CAGGTTCTCATAGTTGGACGGGAAAATCGGAACCGCTCCATTGATGGGGA
CGTGGTTGTTCTTGAATTGCTTCCAAAGTCGAAGTGGCAATTCCCGTCTA
ATCTGGCCATCGATCAGGACGAAGCTGATGTAGAAAGCGATTCTGAGGAC
ACTGATGTTCGTGTTCCCGATTCTCGTCCGCACAAACAGAGACCTGCAGT
TCAAGGCCGCGAGCCACGGCCCACTGGTCGAGTTGTTGCTATTGCTCAAC
GAAATTGGCGTCCATACTGTGGAACAATTAGTGAGAAAAGCCTTCGCGGT
GGTGATACTGCACTATGCATACCAATGGATCGCAACGTTCCAAAGATCAG
AGTGCGTTCCCGGAGAATACCTCAGCTGCTAGGTAAGAGGGTTTTGATCA
TCATCGACAAATGGGATCGTACTTCAATTCATCCCTCGGGGCACATCGTA
CGTGAAATCGGACCCAGTGAGGAGAAAGAAGCCGAGACAGAAGTTATATT
GATAGAGAATGGAATTCCGACCCGCAAGTTCTCAGATGCTGCCATGGCAT
GCTTGCCCAATGAGTCATGGAAAGTAACAGAAGAGCACTGCAAAACACAA
TGGGATTTGCGTGAAATGACGATTTGCATCGTAGACCCTCCTGGTTGTAC
AGGTATAGACGATGCGTTGCATTTTCGTCGTGTAGGCGCAGATGAGGTGG
AAGTCGGCGTCCACATCGCGGAAGTTACTGCATTTGTCGGTCACGGAACT
GTGTTAGACAATGAAGCAGCCGAAAGGGGGTGTACTGTGTATGTTGTTGA
TCGCAGAATAGAAATGCTGCCTGGTCTTCTTTCTGGAAACTTTTGTTCTC
TCAGAGGAGGCGAAGAGCGCCTCTCATTTTCAGTTCTGATACGCATGGAT
AACGAGGGCAATGTCAAACAGAGAGAATTTGGAAGATCTGTAATCAAATC
GAAAGCTGCATTGACGTACGAGATGGCACAAAACCGCATTGATGATGCAA
GAAAGATGACGCAAAGATGA back to topCoding sequence (CDS) from alignment at tig00000879_pilon:126702..130621+ >Ggra6241.t1 ID=Ggra6241.t1|Name=Ggra6241.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00000879_pilon:126702..130621+ (Gracilaria gracilis GNS1m male) ATGGAAAGACGTGGTACTTCGACTGCCACTCAAGGAGGCGGTACTGGAAG TGGGTTTGTAGTACCACTCCAGATCAAAAATGAAAGAGCCAATGGCAAGA AAATGGTGTCCGATATATTGAATTCGGCGCGAGAATGGGTAGCTAAGCGT GAACTGTCCCTGGAGGAGAACGAGCACCTTGAAAATCGATATAGTCATGA TGAGGTTCACTTTCGGCTTTTGAAGCGGAGGCTGGAACAGATTCTGGAGA GAAGGAAGCAAGCATTTAGAAGCTGCATTGTGGGAGACAATGTATCGGCT AACCCTGATGACGGTCGGAGTAGTGGGTTTCAAAATTCTCCATTATCTAA AGCAGTGAACACTAGGCAATGTGATGATCTGCGTAGGGGTGGGAATGCCA GTAGTTCAAAGTCAATTCCGATTAAGCCGTTTGTGCCTGCCTTACCAAAG GACATTGAATCAGTCATTGaaatatggaacgatggtattgtgagtcaggT GCAAACTGACTCAGCGAGGAAATTCCCAGAAAGGAAGGCGAAGGCGGGGA TACGCGGAAAACGTTATTATCAAGGGACGCATCATCCCAGTACCTACGAT GTGACCGAAGCCACCGTCACTGTATGTCTCGAACCCAAGGATAAGTCAAA GAGAACGCAGGTTCTCATAGTTGGACGGGAAAATCGGAACCGCTCCATTG ATGGGGACGTGGTTGTTCTTGAATTGCTTCCAAAGTCGAAGTGGCAATTC CCGTCTAATCTGGCCATCGATCAGGACGAAGCTGATGTAGAAAGCGATTC TGAGGACACTGATGTTCGTGTTCCCGATTCTCGTCCGCACAAACAGAGAC CTGCAGTTCAAGGCCGCGAGCCACGGCCCACTGGTCGAGTTGTTGCTATT GCTCAACGAAATTGGCGTCCATACTGTGGAACAATTAGTGAGAAAAGCCT TCGCGGTGGTGATACTGCACTATGCATACCAATGGATCGCAACGTTCCAA AGATCAGAGTGCGTTCCCGGAGAATACCTCAGCTGCTAGGTAAGAGGGTT TTGATCATCATCGACAAATGGGATCGTACTTCAATTCATCCCTCGGGGCA CATCGTACGTGAAATCGGACCCAGTGAGGAGAAAGAAGCCGAGACAGAAG TTATATTGATAGAGAATGGAATTCCGACCCGCAAGTTCTCAGATGCTGCC ATGGCATGCTTGCCCAATGAGTCATGGAAAGTAACAGAAGAGCACTGCAA AACACAATGGGATTTGCGTGAAATGACGATTTGCATCGTAGACCCTCCTG GTTGTACAGGTATAGACGATGCGTTGCATTTTCGTCGTGTAGGCGCAGAT GAGGTGGAAGTCGGCGTCCACATCGCGGAAGTTACTGCATTTGTCGGTCA CGGAACTGTGTTAGACAATGAAGCAGCCGAAAGGGGGTGTACTGTGTATG TTGTTGATCGCAGAATAGAAATGCTGCCTGGTCTTCTTTCTGGAAACTTT TGTTCTCTCAGAGGAGGCGAAGAGCGCCTCTCATTTTCAGTTCTGATACG CATGGATAACGAGGGCAATGTCAAACAGAGAGAATTTGGAAGATCTGTAA TCAAATCGAAAGCTGCATTGACGTACGAGATGGCACAAAACCGCATTGAT GATGCAAGAAAGATGACGCAAAGATGA back to top
|