Ggra6238.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6238.t1
Unique NameGgra6238.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:117551..118336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6238Ggra6238Gracilaria gracilis GNS1m malegenetig00000879_pilon 117551..118336 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6238.t1.stop1Ggra6238.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 117551..117553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6238.t1.CDS1Ggra6238.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 117551..118336 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6238.t1.exon1Ggra6238.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 117551..118336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6238.t1.start1Ggra6238.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 118334..118336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6238.t1Ggra6238.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 117551..118336 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6238.t1 ID=Ggra6238.t1|Name=Ggra6238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MAETGCYTEIQAGTLDQAEKTVCMQQSVLLHIGAAATSVPDIGNDVIGTK
KRFPCRTSSGKGKTTMKHLFRAYATLCVLISVVSFALGLQPDEHDPSSTV
TYDECARAFACDFTFEGVDRLGNFSMDVHRKTVFTPPIRAYNPNHHVSYV
ATSERTESYECTGEGSNRSCGFKFFHYQSYDWGPMWLFAPELYDGMAVSG
IAPEVVRGIDREQARNRCIRVRFNTIYMLNDDWRPTGVDIIHAVDDDIWD
KDNKCVMFLVH*
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spliced messenger RNA

>Ggra6238.t1 ID=Ggra6238.t1|Name=Ggra6238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000879_pilon:117551..118336- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAACTGGTTGCTACACCGAAATACAGGCTGGAACCTTAGATCA
AGCTGAGAAAACGGTCTGTATGCAACAGAGTGTTTTATTACATATAGGTG
CTGCTGCAACTTCAGTTCCAGATATCGGCAATGACGTGATTGGGACAAAG
AAACGATTTCCCTGCCGAACGTCTAGTGGAAAAGGCAAAACCACCATGAA
GCACTTATTCAGAGCATACGCAACCTTGTGTGTGTTGATTTCAGTTGTCT
CATTTGCACTTGGGCTGCAACCAGATGAGCACGACCCGTCATCAACAGTC
ACCTACGACGAGTGTGCAAGAGCATTTGCTTGCGACTTCACTTTCGAAGG
AGTAGATCGTCTTGGAAACTTTTCGATGGATGTACATAGGAAGACAGTAT
TCACACCGCCAATTCGTGCATACAATCCCAACCATCACGTAAGCTATGTT
GCCACCAGTGAGAGAACAGAGAGTTACGAGTGTACGGGAGAAGGAAGTAA
TCGTTCATGTGGCTTTAAGTTCTTCCATTATCAGAGCTATGACTGGGGAC
CGATGTGGTTGTTCGCCCCGGAGTTGTATGATGGTATGGCAGTCTCCGGG
ATAGCACCGGAAGTTGTTCGTGGCATTGATCGGGAACAGGCGCGAAATCG
ATGCATAAGGGTTCGGTTCAACACCATTTACATGTTGAATGATGACTGGC
GTCCGACTGGTGTTGACATCATTCATGCAGTTGATGATGATATTTGGGAT
AAGGACAACAAATGTGTCATGTTCCTAGTTCATTAA
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protein sequence of Ggra6238.t1

>Ggra6238.t1 ID=Ggra6238.t1|Name=Ggra6238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MAETGCYTEIQAGTLDQAEKTVCMQQSVLLHIGAAATSVPDIGNDVIGTK
KRFPCRTSSGKGKTTMKHLFRAYATLCVLISVVSFALGLQPDEHDPSSTV
TYDECARAFACDFTFEGVDRLGNFSMDVHRKTVFTPPIRAYNPNHHVSYV
ATSERTESYECTGEGSNRSCGFKFFHYQSYDWGPMWLFAPELYDGMAVSG
IAPEVVRGIDREQARNRCIRVRFNTIYMLNDDWRPTGVDIIHAVDDDIWD
KDNKCVMFLVH*
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mRNA from alignment at tig00000879_pilon:117551..118336-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6238.t1 ID=Ggra6238.t1|Name=Ggra6238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000879_pilon:117551..118336- (Gracilaria gracilis GNS1m male)
ATGGCAGAAACTGGTTGCTACACCGAAATACAGGCTGGAACCTTAGATCA
AGCTGAGAAAACGGTCTGTATGCAACAGAGTGTTTTATTACATATAGGTG
CTGCTGCAACTTCAGTTCCAGATATCGGCAATGACGTGATTGGGACAAAG
AAACGATTTCCCTGCCGAACGTCTAGTGGAAAAGGCAAAACCACCATGAA
GCACTTATTCAGAGCATACGCAACCTTGTGTGTGTTGATTTCAGTTGTCT
CATTTGCACTTGGGCTGCAACCAGATGAGCACGACCCGTCATCAACAGTC
ACCTACGACGAGTGTGCAAGAGCATTTGCTTGCGACTTCACTTTCGAAGG
AGTAGATCGTCTTGGAAACTTTTCGATGGATGTACATAGGAAGACAGTAT
TCACACCGCCAATTCGTGCATACAATCCCAACCATCACGTAAGCTATGTT
GCCACCAGTGAGAGAACAGAGAGTTACGAGTGTACGGGAGAAGGAAGTAA
TCGTTCATGTGGCTTTAAGTTCTTCCATTATCAGAGCTATGACTGGGGAC
CGATGTGGTTGTTCGCCCCGGAGTTGTATGATGGTATGGCAGTCTCCGGG
ATAGCACCGGAAGTTGTTCGTGGCATTGATCGGGAACAGGCGCGAAATCG
ATGCATAAGGGTTCGGTTCAACACCATTTACATGTTGAATGATGACTGGC
GTCCGACTGGTGTTGACATCATTCATGCAGTTGATGATGATATTTGGGAT
AAGGACAACAAATGTGTCATGTTCCTAGTTCATTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:117551..118336-

>Ggra6238.t1 ID=Ggra6238.t1|Name=Ggra6238.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000879_pilon:117551..118336- (Gracilaria gracilis GNS1m male)
ATGGCAGAAACTGGTTGCTACACCGAAATACAGGCTGGAACCTTAGATCA
AGCTGAGAAAACGGTCTGTATGCAACAGAGTGTTTTATTACATATAGGTG
CTGCTGCAACTTCAGTTCCAGATATCGGCAATGACGTGATTGGGACAAAG
AAACGATTTCCCTGCCGAACGTCTAGTGGAAAAGGCAAAACCACCATGAA
GCACTTATTCAGAGCATACGCAACCTTGTGTGTGTTGATTTCAGTTGTCT
CATTTGCACTTGGGCTGCAACCAGATGAGCACGACCCGTCATCAACAGTC
ACCTACGACGAGTGTGCAAGAGCATTTGCTTGCGACTTCACTTTCGAAGG
AGTAGATCGTCTTGGAAACTTTTCGATGGATGTACATAGGAAGACAGTAT
TCACACCGCCAATTCGTGCATACAATCCCAACCATCACGTAAGCTATGTT
GCCACCAGTGAGAGAACAGAGAGTTACGAGTGTACGGGAGAAGGAAGTAA
TCGTTCATGTGGCTTTAAGTTCTTCCATTATCAGAGCTATGACTGGGGAC
CGATGTGGTTGTTCGCCCCGGAGTTGTATGATGGTATGGCAGTCTCCGGG
ATAGCACCGGAAGTTGTTCGTGGCATTGATCGGGAACAGGCGCGAAATCG
ATGCATAAGGGTTCGGTTCAACACCATTTACATGTTGAATGATGACTGGC
GTCCGACTGGTGTTGACATCATTCATGCAGTTGATGATGATATTTGGGAT
AAGGACAACAAATGTGTCATGTTCCTAGTTCATTAA
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