Ggra6230.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6230.t1
Unique NameGgra6230.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:94051..94710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705590.1
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0010287,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Evalue2.56e-87
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6230Ggra6230Gracilaria gracilis GNS1m malegenetig00000879_pilon 94051..94710 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1.start1Ggra6230.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 94051..94053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1.CDS1Ggra6230.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 94051..94710 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1.exon1Ggra6230.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 94051..94710 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1.stop1Ggra6230.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 94708..94710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1Ggra6230.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 94051..94710 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAV
LLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAA
SMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILN
QRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVK
APSENFIAGLGSPSRASLN*
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spliced messenger RNA

>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000879_pilon:94051..94710+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGCGGAGTCCCGAAGGTGCCGTACAAGGCACCCGGCGCGCAGAA
CCACGAGTTCATTGACATATTCAACCGTCTTTACCGAGAACGCATTATAT
ATGTGGGACAGGACCTGGACGATGAGTCTGCGAATCAAATTATCGCAGTC
CTGCTCTACCTTGAGAACGATGATGCCAAATCAAACGTTTCGATGTACTT
CAATTGCCCTGGTGGTACAATACCCGCTGGTCTTGCTGTGTATGACTGCA
TGCAAGCCATGAAGTACCCGGTGGTAACCTTGAATCTAGGTTTGGCTGCT
TCTATGAGTGCGTTCCTAGTTGCTGCTGGAACGAAAGGGAAACGCATGGC
TCTACCGAATTCTCGCTTTCTGTTGCAAAGCCCTTCTCTGCCAGACACAG
TCAGAGGACAAGCCTCCGACGTGGCAATTGAAGTACGAAATATTCTAAAC
CAACGCAATAGAATTATAGATGGTTTGCATCAGTTCACGGGAAGAAGCAA
AGATCAGCTTAAAGAGGACTTGAGCAGAGACATGTACTTGACTGCACCTG
AAGCTCGCACATATGGCTTAATAGACAATGTGCTAATGCCCCAGGTCAAG
GCTCCGAGTGAAAACTTTATCGCTGGCCTGGGTTCACCCAGTCGAGCTTC
TTTGAATTAA
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protein sequence of Ggra6230.t1

>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAV
LLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAA
SMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILN
QRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVK
APSENFIAGLGSPSRASLN*
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mRNA from alignment at tig00000879_pilon:94051..94710+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000879_pilon:94051..94710+ (Gracilaria gracilis GNS1m male)
ATGGCTGGCGGAGTCCCGAAGGTGCCGTACAAGGCACCCGGCGCGCAGAA
CCACGAGTTCATTGACATATTCAACCGTCTTTACCGAGAACGCATTATAT
ATGTGGGACAGGACCTGGACGATGAGTCTGCGAATCAAATTATCGCAGTC
CTGCTCTACCTTGAGAACGATGATGCCAAATCAAACGTTTCGATGTACTT
CAATTGCCCTGGTGGTACAATACCCGCTGGTCTTGCTGTGTATGACTGCA
TGCAAGCCATGAAGTACCCGGTGGTAACCTTGAATCTAGGTTTGGCTGCT
TCTATGAGTGCGTTCCTAGTTGCTGCTGGAACGAAAGGGAAACGCATGGC
TCTACCGAATTCTCGCTTTCTGTTGCAAAGCCCTTCTCTGCCAGACACAG
TCAGAGGACAAGCCTCCGACGTGGCAATTGAAGTACGAAATATTCTAAAC
CAACGCAATAGAATTATAGATGGTTTGCATCAGTTCACGGGAAGAAGCAA
AGATCAGCTTAAAGAGGACTTGAGCAGAGACATGTACTTGACTGCACCTG
AAGCTCGCACATATGGCTTAATAGACAATGTGCTAATGCCCCAGGTCAAG
GCTCCGAGTGAAAACTTTATCGCTGGCCTGGGTTCACCCAGTCGAGCTTC
TTTGAATTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:94051..94710+

>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000879_pilon:94051..94710+ (Gracilaria gracilis GNS1m male)
ATGGCTGGCGGAGTCCCGAAGGTGCCGTACAAGGCACCCGGCGCGCAGAA
CCACGAGTTCATTGACATATTCAACCGTCTTTACCGAGAACGCATTATAT
ATGTGGGACAGGACCTGGACGATGAGTCTGCGAATCAAATTATCGCAGTC
CTGCTCTACCTTGAGAACGATGATGCCAAATCAAACGTTTCGATGTACTT
CAATTGCCCTGGTGGTACAATACCCGCTGGTCTTGCTGTGTATGACTGCA
TGCAAGCCATGAAGTACCCGGTGGTAACCTTGAATCTAGGTTTGGCTGCT
TCTATGAGTGCGTTCCTAGTTGCTGCTGGAACGAAAGGGAAACGCATGGC
TCTACCGAATTCTCGCTTTCTGTTGCAAAGCCCTTCTCTGCCAGACACAG
TCAGAGGACAAGCCTCCGACGTGGCAATTGAAGTACGAAATATTCTAAAC
CAACGCAATAGAATTATAGATGGTTTGCATCAGTTCACGGGAAGAAGCAA
AGATCAGCTTAAAGAGGACTTGAGCAGAGACATGTACTTGACTGCACCTG
AAGCTCGCACATATGGCTTAATAGACAATGTGCTAATGCCCCAGGTCAAG
GCTCCGAGTGAAAACTTTATCGCTGGCCTGGGTTCACCCAGTCGAGCTTC
TTTGAATTAA
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