Ggra6226.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6226.t1
Unique NameGgra6226.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:39300..41162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6226Ggra6226Gracilaria gracilis GNS1m malegenetig00000879_pilon 39300..41162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1Ggra6226.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 39300..41162 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1.start1Ggra6226.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 39300..39302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1.CDS1Ggra6226.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 39300..39804 +
Ggra6226.t1.CDS2Ggra6226.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 40465..41162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1.exon1Ggra6226.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 39300..39804 +
Ggra6226.t1.exon2Ggra6226.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 40465..41162 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1.intron1Ggra6226.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 39805..40464 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6226.t1.stop1Ggra6226.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 41160..41162 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6226.t1 ID=Ggra6226.t1|Name=Ggra6226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MCSSESSVSIPRHIADSNNGLSSSPVAQPSPSQTSPNVMDNHPNYPGQGS
ASSSQHPHPIHATAPLPTVEAVPSDNVDVWNSAQAVPLYANSAGWVSKGS
LAVRDPLRDGDAFCRAPWFHPQAVNDTALLESYVENGVLPGGLPLAVVTS
NDWKVLVAIAPMLLRYDPRKNVEDVRHIIDVMDLVNWDLVPWANRNKGSR
NRWDRSPGRRHNTAGDFVCYDPWEGTLTTPVYAQWAQRQPTVLLAGHPTG
FVFSDNWVPPVDLDDPTVDVEVMEDEANAVGGVNRETVLLPEGNQVTHTV
GGVSQAPTGWNVPTPSSAPVTAPLPVSATMPAAFPTSTPVVATQPVDSPA
SVAALRESLRGVGIIVPDHLQSTAAILAYAPQPPGQGQSNQSVTGPSSGV
*
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spliced messenger RNA

>Ggra6226.t1 ID=Ggra6226.t1|Name=Ggra6226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000879_pilon:39300..41162+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTAGTTCCGAGTCATCGGTTTCCATCCCACGCCATATTGCGGACAG
TAACAACGGCCTCTCGTCTTCTCCTGTCGCTCAGCCTTCGCCAAGTCAAA
CGTCTCCGAACGTAATGGACAACCACCCGAACTACCCAGGTCAGGGTTCC
GCGAGTTCCTCGCAGCATCCTCACCCGATTCACGCCACGGCGCCGTTACC
GACTGTCGAAGCGGTCCCTTCAGACAACGTGGACGTCTGGAACTCCGCTC
AGGCGGTTCCTTTATACGCCAACTCAGCGGGGTGGGTGTCCAAGGGGTCT
CTCGCCGTACGCGATCCACTCCGAGATGGAGACGCCTTTTGCCGGGCTCC
CTGGTTTCACCCGCAGGCGGTTAACGACACAGCGCTGTTGGAATCCTATG
TGGAGAATGGGGTCTTACCGGGAGGTCTTCCACTGGCGGTAGTGACCTCC
AACGATTGGAAAGTGCTCGTAGCGATCGCCCCGATGCTTCTCCGGTACGA
CCCTCGGAAAAACGTCGAAGACGTCCGTCACATCATCGATGTTATGGACC
TGGTCAACTGGGATCTCGTTCCTTGGGCCAACCGTAACAAGGGTTCTCGT
AATCGTTGGGATCGATCTCCGGGGCGCCGGCATAACACTGCGGGCGACTT
CGTGTGCTATGACCCGTGGGAGGGTACTCTGACAACGCCAGTATACGCCC
AGTGGGCCCAGCGCCAGCCGACCGTTCTGCTGGCGGGTCACCCTACCGGG
TTCGTCTTCAGCGACAACTGGGTTCCTCCAGTGGACCTGGATGATCCGAC
CGTGGATGTTGAAGTGATGGAAGACGAGGCTAACGCCGTTGGCGGAGTTA
ACCGGGAGACGGTTCTACTTCCTGAGGGTAACCAGGTAACCCACACTGTT
GGTGGTGTATCCCAGGCTCCTACGGGGTGGAATGTCCCAACTCCTTCGAG
TGCTCCGGTGACTGCGCCGCTTCCGGTGTCCGCTACCATGCCCGCGGCGT
TCCCGACCTCAACTCCGGTGGTTGCAACCCAACCGGTTGATTCCCCTGCA
AGCGTCGCCGCTTTGCGCGAAAGCCTTCGTGGAGTGGGTATCATCGTTCC
CGATCATTTGCAGTCGACTGCAGCCATTTTGGCTTATGCGCCGCAGCCTC
CTGGGCAGGGCCAGAGTAACCAGAGTGTTACGGGTCCCTCTTCGGGCGTG
TAG
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protein sequence of Ggra6226.t1

>Ggra6226.t1 ID=Ggra6226.t1|Name=Ggra6226.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MCSSESSVSIPRHIADSNNGLSSSPVAQPSPSQTSPNVMDNHPNYPGQGS
ASSSQHPHPIHATAPLPTVEAVPSDNVDVWNSAQAVPLYANSAGWVSKGS
LAVRDPLRDGDAFCRAPWFHPQAVNDTALLESYVENGVLPGGLPLAVVTS
NDWKVLVAIAPMLLRYDPRKNVEDVRHIIDVMDLVNWDLVPWANRNKGSR
NRWDRSPGRRHNTAGDFVCYDPWEGTLTTPVYAQWAQRQPTVLLAGHPTG
FVFSDNWVPPVDLDDPTVDVEVMEDEANAVGGVNRETVLLPEGNQVTHTV
GGVSQAPTGWNVPTPSSAPVTAPLPVSATMPAAFPTSTPVVATQPVDSPA
SVAALRESLRGVGIIVPDHLQSTAAILAYAPQPPGQGQSNQSVTGPSSGV
*
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mRNA from alignment at tig00000879_pilon:39300..41162+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6226.t1 ID=Ggra6226.t1|Name=Ggra6226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00000879_pilon:39300..41162+ (Gracilaria gracilis GNS1m male)
ATGTGTAGTTCCGAGTCATCGGTTTCCATCCCACGCCATATTGCGGACAG
TAACAACGGCCTCTCGTCTTCTCCTGTCGCTCAGCCTTCGCCAAGTCAAA
CGTCTCCGAACGTAATGGACAACCACCCGAACTACCCAGGTCAGGGTTCC
GCGAGTTCCTCGCAGCATCCTCACCCGATTCACGCCACGGCGCCGTTACC
GACTGTCGAAGCGGTCCCTTCAGACAACGTGGACGTCTGGAACTCCGCTC
AGGCGGTTCCTTTATACGCCAACTCAGCGGGGTGGGTGTCCAAGGGGTCT
CTCGCCGTACGCGATCCACTCCGAGATGGAGACGCCTTTTGCCGGGCTCC
CTGGTTTCACCCGCAGGCGGTTAACGACACAGCGCTGTTGGAATCCTATG
TGGAGAATGGGGTCTTACCGGGAGGTCTTCCACTGGCGGTAGTGACCTCC
AACGATTGGAAAGTGCTCGTAGCGATCGCCCCGATGCTTCTCCGGTACGA
CCCTCGTAAGGGTGAGAACCTCAACTCCGCACGCGCGGAACACGCGATAA
GAGCGTACAAACGGCTTCGACGTGGACGCTGGGAACTTCCCACTCCTCCG
GAGtacgggtttgatcggcccttctaccgaacattcggtgaagtgtccta
gggagagaaccttagttggtttaacgttgaccgtttcgccggcttgggct
tcaacaattcgccacagatgctgtgctggtcgcgaccgattctccgggct
gaattccggtatgtccgttagaaagaagtccagtatggattcgccgatta
tattcggttcgaacgtaaggcgcgaagccgtcacggttacttcgttccgt
atactcatatcgagactgagggttaccgaccacaggcattcatcaacagg
ttcgtgccgttaccagaattctggagccagctggaggtacctaaagggtg
ttttccgaagctccctccgtgcctcaactttatcggctcgaagctgatgc
atgacccacagtcggggtactgggggctgctaggcggtgaatgggctgcc
cgcatcgcggctttcctgctctgggatgcttttgacaagtaccgtatatg
gtacatgccACCGCTCATGCGGACGCTCATCAAGACGTTGAACTTGCGCA
CCGCCTTGGGGTCAGGGAAAAACGTCGAAGACGTCCGTCACATCATCGAT
GTTATGGACCTGGTCAACTGGGATCTCGTTCCTTGGGCCAACCGTAACAA
GGGTTCTCGTAATCGTTGGGATCGATCTCCGGGGCGCCGGCATAACACTG
CGGGCGACTTCGTGTGCTATGACCCGTGGGAGGGTACTCTGACAACGCCA
GTATACGCCCAGTGGGCCCAGCGCCAGCCGACCGTTCTGCTGGCGGGTCA
CCCTACCGGGTTCGTCTTCAGCGACAACTGGGTTCCTCCAGTGGACCTGG
ATGATCCGACCGTGGATGTTGAAGTGATGGAAGACGAGGCTAACGCCGTT
GGCGGAGTTAACCGGGAGACGGTTCTACTTCCTGAGGGTAACCAGGTAAC
CCACACTGTTGGTGGTGTATCCCAGGCTCCTACGGGGTGGAATGTCCCAA
CTCCTTCGAGTGCTCCGGTGACTGCGCCGCTTCCGGTGTCCGCTACCATG
CCCGCGGCGTTCCCGACCTCAACTCCGGTGGTTGCAACCCAACCGGTTGA
TTCCCCTGCAAGCGTCGCCGCTTTGCGCGAAAGCCTTCGTGGAGTGGGTA
TCATCGTTCCCGATCATTTGCAGTCGACTGCAGCCATTTTGGCTTATGCG
CCGCAGCCTCCTGGGCAGGGCCAGAGTAACCAGAGTGTTACGGGTCCCTC
TTCGGGCGTGTAG
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Coding sequence (CDS) from alignment at tig00000879_pilon:39300..41162+

>Ggra6226.t1 ID=Ggra6226.t1|Name=Ggra6226.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000879_pilon:39300..41162+ (Gracilaria gracilis GNS1m male)
ATGTGTAGTTCCGAGTCATCGGTTTCCATCCCACGCCATATTGCGGACAG
TAACAACGGCCTCTCGTCTTCTCCTGTCGCTCAGCCTTCGCCAAGTCAAA
CGTCTCCGAACGTAATGGACAACCACCCGAACTACCCAGGTCAGGGTTCC
GCGAGTTCCTCGCAGCATCCTCACCCGATTCACGCCACGGCGCCGTTACC
GACTGTCGAAGCGGTCCCTTCAGACAACGTGGACGTCTGGAACTCCGCTC
AGGCGGTTCCTTTATACGCCAACTCAGCGGGGTGGGTGTCCAAGGGGTCT
CTCGCCGTACGCGATCCACTCCGAGATGGAGACGCCTTTTGCCGGGCTCC
CTGGTTTCACCCGCAGGCGGTTAACGACACAGCGCTGTTGGAATCCTATG
TGGAGAATGGGGTCTTACCGGGAGGTCTTCCACTGGCGGTAGTGACCTCC
AACGATTGGAAAGTGCTCGTAGCGATCGCCCCGATGCTTCTCCGGTACGA
CCCTCGGAAAAACGTCGAAGACGTCCGTCACATCATCGATGTTATGGACC
TGGTCAACTGGGATCTCGTTCCTTGGGCCAACCGTAACAAGGGTTCTCGT
AATCGTTGGGATCGATCTCCGGGGCGCCGGCATAACACTGCGGGCGACTT
CGTGTGCTATGACCCGTGGGAGGGTACTCTGACAACGCCAGTATACGCCC
AGTGGGCCCAGCGCCAGCCGACCGTTCTGCTGGCGGGTCACCCTACCGGG
TTCGTCTTCAGCGACAACTGGGTTCCTCCAGTGGACCTGGATGATCCGAC
CGTGGATGTTGAAGTGATGGAAGACGAGGCTAACGCCGTTGGCGGAGTTA
ACCGGGAGACGGTTCTACTTCCTGAGGGTAACCAGGTAACCCACACTGTT
GGTGGTGTATCCCAGGCTCCTACGGGGTGGAATGTCCCAACTCCTTCGAG
TGCTCCGGTGACTGCGCCGCTTCCGGTGTCCGCTACCATGCCCGCGGCGT
TCCCGACCTCAACTCCGGTGGTTGCAACCCAACCGGTTGATTCCCCTGCA
AGCGTCGCCGCTTTGCGCGAAAGCCTTCGTGGAGTGGGTATCATCGTTCC
CGATCATTTGCAGTCGACTGCAGCCATTTTGGCTTATGCGCCGCAGCCTC
CTGGGCAGGGCCAGAGTAACCAGAGTGTTACGGGTCCCTCTTCGGGCGTG
TAG
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