Ggra6222.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6222.t1
Unique NameGgra6222.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:208457..209575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6222Ggra6222Gracilaria gracilis GNS1m malegenetig00000167_pilon 208457..209575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1Ggra6222.t1Gracilaria gracilis GNS1m malepolypeptidetig00000167_pilon 208457..209575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1.start1Ggra6222.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000167_pilon 208457..208459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1.CDS1Ggra6222.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000167_pilon 208457..208539 +
Ggra6222.t1.CDS2Ggra6222.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000167_pilon 208620..209231 +
Ggra6222.t1.CDS3Ggra6222.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000167_pilon 209320..209575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1.exon1Ggra6222.t1.exon1Gracilaria gracilis GNS1m maleexontig00000167_pilon 208457..208539 +
Ggra6222.t1.exon2Ggra6222.t1.exon2Gracilaria gracilis GNS1m maleexontig00000167_pilon 208620..209231 +
Ggra6222.t1.exon3Ggra6222.t1.exon3Gracilaria gracilis GNS1m maleexontig00000167_pilon 209320..209575 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1.intron1Ggra6222.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000167_pilon 208540..208619 +
Ggra6222.t1.intron2Ggra6222.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000167_pilon 209232..209319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6222.t1.stop1Ggra6222.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000167_pilon 209573..209575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6222.t1 ID=Ggra6222.t1|Name=Ggra6222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp
MPHRKPEITKRGPNFTPEEDPALRRAWTVMSVSNGMQPSVALGNSGQTCP
KVYSGGETLSLSDSIRRDRGPTFQNIMTLYRNKNNIKVKREKKLAAPIRF
PPAVRLLATFPKFSSKLGESSRKATVQRTPPVMGVEQHIEETSIGSVAMH
NPTSSCPEGSKKEKKRQQIERNIGGLPKSVDAVNQTLRGSAISKRNAASI
SLQLKVLHRMTLSPKVMNERQEERMSHAAISCLIGNTSSYQAANSTETDM
FALNMNTIGAVAPHDGTSLEQQNETLGAIRLEAGYAVELQPLEAPRASPL
PPMLSMPMPSRASLDA*
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spliced messenger RNA

>Ggra6222.t1 ID=Ggra6222.t1|Name=Ggra6222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000167_pilon:208457..209575+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACCGAAAGCCTGAAATCACCAAAAGAGGCCCGAACTTTACCCC
TGAGGAAGATCCCGCACTTCGTAGGGCATGGACAGTAATGTCGGTCTCGA
ACGGCATGCAGCCTTCAGTCGCGTTGGGCAACAGTGGCCAAACATGCCCA
AAAGTATATAGCGGCGGAGAAACGTTATCGCTCTCGGATTCCATCAGAAG
AGACAGAGGACCAACCTTTCAAAACATTATGACATTATACAGAAACAAGA
ACAATATTAAGGTCAAAAGAGAGAAGAAACTGGCGGCTCCAATTCGCTTT
CCTCCTGCAGTAAGACTGTTGGCAACATTTCCCAAGTTCTCTTCTAAACT
AGGTGAAAGCTCTCGCAAAGCAACTGTGCAACGTACGCCTCCTGTGATGG
GAGTGGAGCAACATATTGAAGAAACATCTATTGGCTCTGTCGCAATGCAC
AATCCCACATCGTCGTGCCCTGAAGGATCAAAGAAAGAGAAGAAGAGGCA
ACAAATAGAACGCAACATTGGGGGACTCCCAAAGAGCGTTGACGCAGTGA
ACCAAACTTTAAGAGGTTCGGCAATCAGTAAGAGAAATGCCGCTTCCATA
TCATTGCAGCTCAAGGTACTGCACCGAATGACGTTATCACCGAAGGTCAT
GAACGAACGCCAGGAGGAACGAATGTCCCATGCAGCTATATCTTGTCTCA
TTGGTAACACCTCCTCTTATCAAGCCGCAAACAGCACAGAGACTGATATG
TTTGCTTTAAACATGAACACTATTGGTGCGGTTGCGCCGCACGATGGGAC
ATCTTTAGAACAGCAAAATGAAACTCTCGGGGCTATCCGCCTAGAAGCAG
GGTATGCCGTAGAGCTCCAGCCGCTGGAGGCGCCTCGGGCGTCTCCGCTG
CCCCCGATGCTTTCCATGCCCATGCCGTCCAGAGCTTCTCTTGATGCGTA
A
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protein sequence of Ggra6222.t1

>Ggra6222.t1 ID=Ggra6222.t1|Name=Ggra6222.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=317bp
MPHRKPEITKRGPNFTPEEDPALRRAWTVMSVSNGMQPSVALGNSGQTCP
KVYSGGETLSLSDSIRRDRGPTFQNIMTLYRNKNNIKVKREKKLAAPIRF
PPAVRLLATFPKFSSKLGESSRKATVQRTPPVMGVEQHIEETSIGSVAMH
NPTSSCPEGSKKEKKRQQIERNIGGLPKSVDAVNQTLRGSAISKRNAASI
SLQLKVLHRMTLSPKVMNERQEERMSHAAISCLIGNTSSYQAANSTETDM
FALNMNTIGAVAPHDGTSLEQQNETLGAIRLEAGYAVELQPLEAPRASPL
PPMLSMPMPSRASLDA*
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mRNA from alignment at tig00000167_pilon:208457..209575+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6222.t1 ID=Ggra6222.t1|Name=Ggra6222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000167_pilon:208457..209575+ (Gracilaria gracilis GNS1m male)
ATGCCGCACCGAAAGCCTGAAATCACCAAAAGAGGCCCGAACTTTACCCC
TGAGGAAGATCCCGCACTTCGTAGGGCATGGACGTCCGCAACGCGGTCCA
TCACTGAACAGAATGCCGAAACCTTTTGGAGCACTGTGTACAATGCGTTT
GTAACTCAACCAGAGTAATGTCGGTCTCGAACGGCATGCAGCCTTCAGTC
GCGTTGGGCAACAGTGGCCAAACATGCCCAAAAGTATATAGCGGCGGAGA
AACGTTATCGCTCTCGGATTCCATCAGAAGAGACAGAGGACCAACCTTTC
AAAACATTATGACATTATACAGAAACAAGAACAATATTAAGGTCAAAAGA
GAGAAGAAACTGGCGGCTCCAATTCGCTTTCCTCCTGCAGTAAGACTGTT
GGCAACATTTCCCAAGTTCTCTTCTAAACTAGGTGAAAGCTCTCGCAAAG
CAACTGTGCAACGTACGCCTCCTGTGATGGGAGTGGAGCAACATATTGAA
GAAACATCTATTGGCTCTGTCGCAATGCACAATCCCACATCGTCGTGCCC
TGAAGGATCAAAGAAAGAGAAGAAGAGGCAACAAATAGAACGCAACATTG
GGGGACTCCCAAAGAGCGTTGACGCAGTGAACCAAACTTTAAGAGGTTCG
GCAATCAGTAAGAGAAATGCCGCTTCCATATCATTGCAGCTCAAGGTACT
GCACCGAATGACGTTATCACCGAAGGTCATGAACGAACGCCAGGAGGAAC
GAATGTCCCATGCAGCTATATCTTGGTGAATTTGTTACTGGAATGTATAT
GGAAACAAGCTCGGTTGAACAAAAATCCATTCATGGCAGCGCAATCACGT
CCTGTAATCCTAGTCTCATTGGTAACACCTCCTCTTATCAAGCCGCAAAC
AGCACAGAGACTGATATGTTTGCTTTAAACATGAACACTATTGGTGCGGT
TGCGCCGCACGATGGGACATCTTTAGAACAGCAAAATGAAACTCTCGGGG
CTATCCGCCTAGAAGCAGGGTATGCCGTAGAGCTCCAGCCGCTGGAGGCG
CCTCGGGCGTCTCCGCTGCCCCCGATGCTTTCCATGCCCATGCCGTCCAG
AGCTTCTCTTGATGCGTAA
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Coding sequence (CDS) from alignment at tig00000167_pilon:208457..209575+

>Ggra6222.t1 ID=Ggra6222.t1|Name=Ggra6222.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000167_pilon:208457..209575+ (Gracilaria gracilis GNS1m male)
ATGCCGCACCGAAAGCCTGAAATCACCAAAAGAGGCCCGAACTTTACCCC
TGAGGAAGATCCCGCACTTCGTAGGGCATGGACAGTAATGTCGGTCTCGA
ACGGCATGCAGCCTTCAGTCGCGTTGGGCAACAGTGGCCAAACATGCCCA
AAAGTATATAGCGGCGGAGAAACGTTATCGCTCTCGGATTCCATCAGAAG
AGACAGAGGACCAACCTTTCAAAACATTATGACATTATACAGAAACAAGA
ACAATATTAAGGTCAAAAGAGAGAAGAAACTGGCGGCTCCAATTCGCTTT
CCTCCTGCAGTAAGACTGTTGGCAACATTTCCCAAGTTCTCTTCTAAACT
AGGTGAAAGCTCTCGCAAAGCAACTGTGCAACGTACGCCTCCTGTGATGG
GAGTGGAGCAACATATTGAAGAAACATCTATTGGCTCTGTCGCAATGCAC
AATCCCACATCGTCGTGCCCTGAAGGATCAAAGAAAGAGAAGAAGAGGCA
ACAAATAGAACGCAACATTGGGGGACTCCCAAAGAGCGTTGACGCAGTGA
ACCAAACTTTAAGAGGTTCGGCAATCAGTAAGAGAAATGCCGCTTCCATA
TCATTGCAGCTCAAGGTACTGCACCGAATGACGTTATCACCGAAGGTCAT
GAACGAACGCCAGGAGGAACGAATGTCCCATGCAGCTATATCTTGTCTCA
TTGGTAACACCTCCTCTTATCAAGCCGCAAACAGCACAGAGACTGATATG
TTTGCTTTAAACATGAACACTATTGGTGCGGTTGCGCCGCACGATGGGAC
ATCTTTAGAACAGCAAAATGAAACTCTCGGGGCTATCCGCCTAGAAGCAG
GGTATGCCGTAGAGCTCCAGCCGCTGGAGGCGCCTCGGGCGTCTCCGCTG
CCCCCGATGCTTTCCATGCCCATGCCGTCCAGAGCTTCTCTTGATGCGTA
A
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