Ggra6170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6170.t1
Unique Name	Ggra6170.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:877664..878983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6170	Ggra6170	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 877664..878983 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6170.t1.start1	Ggra6170.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 877664..877666 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6170.t1.CDS1	Ggra6170.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 877664..878983 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6170.t1.exon1	Ggra6170.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 877664..878983 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6170.t1.stop1	Ggra6170.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 878981..878983 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6170.t1	Ggra6170.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 877664..878983 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:877664..878983+
coding sequence from alignment at tig00000045_pilon:877664..878983+

mRNA sequence

>Ggra6170.t1 ID=Ggra6170.t1|Name=Ggra6170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MRPDIGYNDAGEVVAAHASIRQEEVLKARAYDDQIDAALSHLEVIEAWHC
DAAKDIFTSELSTGMSNNLGDYVWDRLLPYSYKIMHATKTPARSVEEIQE
YIKSFSNTSNLLKHVFAVELNTLLKKKVIDGTRELLLVNGSNRTPISAAK
VIRAMLRRAEVRDATERRANVLNSIIDCSFSEMLYALRQPNICFSIAHDS
RHQHAITTARGVDSSVSAKLRRAERRFNENGEILIGLREWISLASSFSLA
VAIGILVGVKNWAKRENALERVFDAFGAASIVSATLVAVASRKLDIVDLL
YALGGKRRFITSYTELLALVGASEEEIKTCLTFEGHHLPPIAGEGACFTA
EKHDGVFPLRTGLSSTERKSNIIIGNFAAVLLRETDTRCYRVYGKGDTRH
LLVSDDALYRLVAPGEVFTAGSLSALTTTPTASLTKQDR*

spliced messenger RNA

>Ggra6170.t1 ID=Ggra6170.t1|Name=Ggra6170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000045_pilon:877664..878983+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGGACATCGGCTATAACGACGCCGGCGAAGTCGTTGCGGCACA
CGCGTCCATTCGCCAAGAAGAAGTCCTAAAGGCACGCGCCTATGATGACC
AAATCGATGCAGCCCTCTCGCACCTCGAAGTCATTGAGGCCTGGCATTGC
GATGCAGCGAAGGACATTTTCACATCCGAGCTTTCCACAGGTATGTCTAA
CAATCTTGGCGACTACGTATGGGATCGGTTATTACCGTACAGTTACAAGA
TCATGCACGCCACGAAAACGCCGGCGCGCTCAGTTGAAGAAATCCAAGAG
TACATCAAGTCCTTTAGCAACACCTCCAACTTGCTTAAACATGTGTTTGC
GGTCGAGTTGAATACTCTGCTCAAGAAAAAAGTCATAGACGGTACACGAG
AGCTACTTCTCGTCAACGGCTCGAATCGAACACCTATCAGTGCCGCGAAA
GTAATTCGCGCCATGTTGCGACGTGCCGAGGTTCGTGATGCGACCGAGAG
GCGCGCCAACGTCTTAAATAGCATCATTGACTGCTCCTTTTCTGAGATGT
TGTATGCACTCCGCCAGCCAAACATATGCTTCTCCATAGCACATGATTCG
CGCCATCAGCACGCCATCACCACCGCTCGCGGAGTCGATTCCTCGGTGTC
AGCCAAGCTGCGACGTGCTGAGCGTCGCTTCAATGAAAACGGAGAGATCT
TGATTGGACTGCGGGAGTGGATATCGTTAGCGTCAAGCTTCTCGCTTGCT
GTGGCCATTGGTATCCTTGTTGGTGTCAAGAACTGGGCGAAGCGCGAAAA
TGCTTTAGAAAGGGTATTTGACGCATTTGGAGCCGCCAGCATCGTGTCCG
CCACCCTAGTGGCAGTCGCCAGTCGCAAGTTGGACATCGTTGATCTTCTG
TACGCACTTGGCGGTAAGCGACGCTTTATTACCAGCTATACGGAGCTGTT
GGCGCTAGTGGGCGCTTCGGAGGAGGAAATTAAGACGTGTTTGACGTTTG
AGGGACATCATTTACCACCAATTGCGGGCGAGGGTGCATGCTTTACGGCT
GAGAAGCATGACGGTGTGTTTCCTCTCCGCACAGGATTGTCTTCCACAGA
ACGAAAATCTAACATCATCATAGGCAATTTCGCGGCGGTTCTGTTGCGCG
AGACCGACACTCGCTGCTATAGAGTGTATGGAAAGGGTGATACTAGGCAT
CTTCTTGTCAGCGACGACGCTCTGTATCGACTTGTGGCACCTGGAGAGGT
TTTCACGGCAGGCAGTCTGTCAGCATTGACCACGACGCCGACTGCATCTC
TGACGAAGCAGGACAGATAA

protein sequence of Ggra6170.t1

>Ggra6170.t1 ID=Ggra6170.t1|Name=Ggra6170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MRPDIGYNDAGEVVAAHASIRQEEVLKARAYDDQIDAALSHLEVIEAWHC
DAAKDIFTSELSTGMSNNLGDYVWDRLLPYSYKIMHATKTPARSVEEIQE
YIKSFSNTSNLLKHVFAVELNTLLKKKVIDGTRELLLVNGSNRTPISAAK
VIRAMLRRAEVRDATERRANVLNSIIDCSFSEMLYALRQPNICFSIAHDS
RHQHAITTARGVDSSVSAKLRRAERRFNENGEILIGLREWISLASSFSLA
VAIGILVGVKNWAKRENALERVFDAFGAASIVSATLVAVASRKLDIVDLL
YALGGKRRFITSYTELLALVGASEEEIKTCLTFEGHHLPPIAGEGACFTA
EKHDGVFPLRTGLSSTERKSNIIIGNFAAVLLRETDTRCYRVYGKGDTRH
LLVSDDALYRLVAPGEVFTAGSLSALTTTPTASLTKQDR*

mRNA from alignment at tig00000045_pilon:877664..878983+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6170.t1 ID=Ggra6170.t1|Name=Ggra6170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000045_pilon:877664..878983+ (Gracilaria gracilis GNS1m male)
ATGCGCCCGGACATCGGCTATAACGACGCCGGCGAAGTCGTTGCGGCACA
CGCGTCCATTCGCCAAGAAGAAGTCCTAAAGGCACGCGCCTATGATGACC
AAATCGATGCAGCCCTCTCGCACCTCGAAGTCATTGAGGCCTGGCATTGC
GATGCAGCGAAGGACATTTTCACATCCGAGCTTTCCACAGGTATGTCTAA
CAATCTTGGCGACTACGTATGGGATCGGTTATTACCGTACAGTTACAAGA
TCATGCACGCCACGAAAACGCCGGCGCGCTCAGTTGAAGAAATCCAAGAG
TACATCAAGTCCTTTAGCAACACCTCCAACTTGCTTAAACATGTGTTTGC
GGTCGAGTTGAATACTCTGCTCAAGAAAAAAGTCATAGACGGTACACGAG
AGCTACTTCTCGTCAACGGCTCGAATCGAACACCTATCAGTGCCGCGAAA
GTAATTCGCGCCATGTTGCGACGTGCCGAGGTTCGTGATGCGACCGAGAG
GCGCGCCAACGTCTTAAATAGCATCATTGACTGCTCCTTTTCTGAGATGT
TGTATGCACTCCGCCAGCCAAACATATGCTTCTCCATAGCACATGATTCG
CGCCATCAGCACGCCATCACCACCGCTCGCGGAGTCGATTCCTCGGTGTC
AGCCAAGCTGCGACGTGCTGAGCGTCGCTTCAATGAAAACGGAGAGATCT
TGATTGGACTGCGGGAGTGGATATCGTTAGCGTCAAGCTTCTCGCTTGCT
GTGGCCATTGGTATCCTTGTTGGTGTCAAGAACTGGGCGAAGCGCGAAAA
TGCTTTAGAAAGGGTATTTGACGCATTTGGAGCCGCCAGCATCGTGTCCG
CCACCCTAGTGGCAGTCGCCAGTCGCAAGTTGGACATCGTTGATCTTCTG
TACGCACTTGGCGGTAAGCGACGCTTTATTACCAGCTATACGGAGCTGTT
GGCGCTAGTGGGCGCTTCGGAGGAGGAAATTAAGACGTGTTTGACGTTTG
AGGGACATCATTTACCACCAATTGCGGGCGAGGGTGCATGCTTTACGGCT
GAGAAGCATGACGGTGTGTTTCCTCTCCGCACAGGATTGTCTTCCACAGA
ACGAAAATCTAACATCATCATAGGCAATTTCGCGGCGGTTCTGTTGCGCG
AGACCGACACTCGCTGCTATAGAGTGTATGGAAAGGGTGATACTAGGCAT
CTTCTTGTCAGCGACGACGCTCTGTATCGACTTGTGGCACCTGGAGAGGT
TTTCACGGCAGGCAGTCTGTCAGCATTGACCACGACGCCGACTGCATCTC
TGACGAAGCAGGACAGATAA

Coding sequence (CDS) from alignment at tig00000045_pilon:877664..878983+

>Ggra6170.t1 ID=Ggra6170.t1|Name=Ggra6170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000045_pilon:877664..878983+ (Gracilaria gracilis GNS1m male)
ATGCGCCCGGACATCGGCTATAACGACGCCGGCGAAGTCGTTGCGGCACA
CGCGTCCATTCGCCAAGAAGAAGTCCTAAAGGCACGCGCCTATGATGACC
AAATCGATGCAGCCCTCTCGCACCTCGAAGTCATTGAGGCCTGGCATTGC
GATGCAGCGAAGGACATTTTCACATCCGAGCTTTCCACAGGTATGTCTAA
CAATCTTGGCGACTACGTATGGGATCGGTTATTACCGTACAGTTACAAGA
TCATGCACGCCACGAAAACGCCGGCGCGCTCAGTTGAAGAAATCCAAGAG
TACATCAAGTCCTTTAGCAACACCTCCAACTTGCTTAAACATGTGTTTGC
GGTCGAGTTGAATACTCTGCTCAAGAAAAAAGTCATAGACGGTACACGAG
AGCTACTTCTCGTCAACGGCTCGAATCGAACACCTATCAGTGCCGCGAAA
GTAATTCGCGCCATGTTGCGACGTGCCGAGGTTCGTGATGCGACCGAGAG
GCGCGCCAACGTCTTAAATAGCATCATTGACTGCTCCTTTTCTGAGATGT
TGTATGCACTCCGCCAGCCAAACATATGCTTCTCCATAGCACATGATTCG
CGCCATCAGCACGCCATCACCACCGCTCGCGGAGTCGATTCCTCGGTGTC
AGCCAAGCTGCGACGTGCTGAGCGTCGCTTCAATGAAAACGGAGAGATCT
TGATTGGACTGCGGGAGTGGATATCGTTAGCGTCAAGCTTCTCGCTTGCT
GTGGCCATTGGTATCCTTGTTGGTGTCAAGAACTGGGCGAAGCGCGAAAA
TGCTTTAGAAAGGGTATTTGACGCATTTGGAGCCGCCAGCATCGTGTCCG
CCACCCTAGTGGCAGTCGCCAGTCGCAAGTTGGACATCGTTGATCTTCTG
TACGCACTTGGCGGTAAGCGACGCTTTATTACCAGCTATACGGAGCTGTT
GGCGCTAGTGGGCGCTTCGGAGGAGGAAATTAAGACGTGTTTGACGTTTG
AGGGACATCATTTACCACCAATTGCGGGCGAGGGTGCATGCTTTACGGCT
GAGAAGCATGACGGTGTGTTTCCTCTCCGCACAGGATTGTCTTCCACAGA
ACGAAAATCTAACATCATCATAGGCAATTTCGCGGCGGTTCTGTTGCGCG
AGACCGACACTCGCTGCTATAGAGTGTATGGAAAGGGTGATACTAGGCAT
CTTCTTGTCAGCGACGACGCTCTGTATCGACTTGTGGCACCTGGAGAGGT
TTTCACGGCAGGCAGTCTGTCAGCATTGACCACGACGCCGACTGCATCTC
TGACGAAGCAGGACAGATAA