Ggra617.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra617.t1
Unique NameGgra617.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:55585..56403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3750.XP_008360345.1
PFAMsAldose_epim
Max annot lvl35493|Streptophyta
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
Evalue2.64e-58
EggNOG OGsCOG0676@1|root,KOG1594@2759|Eukaryota,37MSX@33090|Viridiplantae,3G85N@35493|Streptophyta,4JMBS@91835|fabids
EC5.1.3.15
DescriptionBelongs to the glucose-6-phosphate 1-epimerase family
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra617Ggra617Gracilaria gracilis GNS1m malegenetig00000895_pilon 55585..56403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra617.t1.stop1Ggra617.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 55585..55587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra617.t1.CDS1Ggra617.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 55585..56403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra617.t1.exon1Ggra617.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 55585..56403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra617.t1.start1Ggra617.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 56401..56403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra617.t1Ggra617.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 55585..56403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra617.t1 ID=Ggra617.t1|Name=Ggra617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
METKTIKAAGESSVTAYHFGAHVTSWKNAAGKEIIYTSPTAILNGTKAIR
GEIPICFPQFGKKGPLCQHGFARSSLWAHDESFSSSDGNPALRFTLRDTE
ETRKTDWGHAFEAAVVISLSPDGNALTVKMEVTNNNKDTPFSFTTALHSY
FCCESQETVLTEYCSLTYADNIESGKSKVQEGDIHFGKEVDRIYIGTKDM
LSIPTANLSITKDNMPDAVVWNPYIEKAAALSDMPNDGWKNFICIEPGRI
AEPANVMPKETWTGSVTLRSIA*
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spliced messenger RNA

>Ggra617.t1 ID=Ggra617.t1|Name=Ggra617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000895_pilon:55585..56403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACAAAGACTATCAAGGCAGCAGGCGAATCATCGGTCACAGCGTA
TCATTTTGGAGCTCACGTCACGAGTTGGAAGAATGCGGCTGGTAAGGAAA
TCATTTACACATCTCCAACAGCAATACTGAACGGCACCAAAGCGATTCGT
GGTGAGATTCCGATTTGTTTCCCTCAATTTGGGAAGAAAGGACCCCTCTG
TCAACATGGGTTTGCCCGAAGCTCGCTATGGGCACACGATGAAAGCTTTA
GTTCCTCAGATGGAAACCCAGCGTTAAGATTTACACTTCGTGATACCGAA
GAGACGCGAAAAACTGACTGGGGCCATGCCTTTGAAGCTGCCGTGGTCAT
ATCTCTGTCACCTGATGGGAACGCTTTGACTGTGAAGATGGAAGTGACAA
ACAATAATAAGGACACGCCATTTTCGTTCACAACAGCGCTTCACTCGTAC
TTTTGTTGCGAATCACAAGAGACGGTACTGACTGAGTATTGTAGTCTGAC
CTACGCGGACAATATAGAATCTGGAAAGTCAAAGGTGCAAGAGGGGGATA
TTCATTTCGGGAAGGAGGTGGATCGCATCTACATTGGTACAAAGGACATG
CTGTCTATACCAACAGCAAACTTGAGTATCACGAAAGATAACATGCCCGA
TGCTGTTGTTTGGAATCCTTATATCGAGAAGGCAGCAGCGTTGTCCGATA
TGCCTAATGACGGCTGGAAGAATTTCATTTGTATCGAACCAGGTCGCATT
GCGGAACCCGCTAACGTGATGCCGAAGGAAACATGGACAGGCTCCGTCAC
TCTCCGTTCCATAGCGTAA
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protein sequence of Ggra617.t1

>Ggra617.t1 ID=Ggra617.t1|Name=Ggra617.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
METKTIKAAGESSVTAYHFGAHVTSWKNAAGKEIIYTSPTAILNGTKAIR
GEIPICFPQFGKKGPLCQHGFARSSLWAHDESFSSSDGNPALRFTLRDTE
ETRKTDWGHAFEAAVVISLSPDGNALTVKMEVTNNNKDTPFSFTTALHSY
FCCESQETVLTEYCSLTYADNIESGKSKVQEGDIHFGKEVDRIYIGTKDM
LSIPTANLSITKDNMPDAVVWNPYIEKAAALSDMPNDGWKNFICIEPGRI
AEPANVMPKETWTGSVTLRSIA*
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mRNA from alignment at tig00000895_pilon:55585..56403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra617.t1 ID=Ggra617.t1|Name=Ggra617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000895_pilon:55585..56403- (Gracilaria gracilis GNS1m male)
ATGGAGACAAAGACTATCAAGGCAGCAGGCGAATCATCGGTCACAGCGTA
TCATTTTGGAGCTCACGTCACGAGTTGGAAGAATGCGGCTGGTAAGGAAA
TCATTTACACATCTCCAACAGCAATACTGAACGGCACCAAAGCGATTCGT
GGTGAGATTCCGATTTGTTTCCCTCAATTTGGGAAGAAAGGACCCCTCTG
TCAACATGGGTTTGCCCGAAGCTCGCTATGGGCACACGATGAAAGCTTTA
GTTCCTCAGATGGAAACCCAGCGTTAAGATTTACACTTCGTGATACCGAA
GAGACGCGAAAAACTGACTGGGGCCATGCCTTTGAAGCTGCCGTGGTCAT
ATCTCTGTCACCTGATGGGAACGCTTTGACTGTGAAGATGGAAGTGACAA
ACAATAATAAGGACACGCCATTTTCGTTCACAACAGCGCTTCACTCGTAC
TTTTGTTGCGAATCACAAGAGACGGTACTGACTGAGTATTGTAGTCTGAC
CTACGCGGACAATATAGAATCTGGAAAGTCAAAGGTGCAAGAGGGGGATA
TTCATTTCGGGAAGGAGGTGGATCGCATCTACATTGGTACAAAGGACATG
CTGTCTATACCAACAGCAAACTTGAGTATCACGAAAGATAACATGCCCGA
TGCTGTTGTTTGGAATCCTTATATCGAGAAGGCAGCAGCGTTGTCCGATA
TGCCTAATGACGGCTGGAAGAATTTCATTTGTATCGAACCAGGTCGCATT
GCGGAACCCGCTAACGTGATGCCGAAGGAAACATGGACAGGCTCCGTCAC
TCTCCGTTCCATAGCGTAA
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Coding sequence (CDS) from alignment at tig00000895_pilon:55585..56403-

>Ggra617.t1 ID=Ggra617.t1|Name=Ggra617.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000895_pilon:55585..56403- (Gracilaria gracilis GNS1m male)
ATGGAGACAAAGACTATCAAGGCAGCAGGCGAATCATCGGTCACAGCGTA
TCATTTTGGAGCTCACGTCACGAGTTGGAAGAATGCGGCTGGTAAGGAAA
TCATTTACACATCTCCAACAGCAATACTGAACGGCACCAAAGCGATTCGT
GGTGAGATTCCGATTTGTTTCCCTCAATTTGGGAAGAAAGGACCCCTCTG
TCAACATGGGTTTGCCCGAAGCTCGCTATGGGCACACGATGAAAGCTTTA
GTTCCTCAGATGGAAACCCAGCGTTAAGATTTACACTTCGTGATACCGAA
GAGACGCGAAAAACTGACTGGGGCCATGCCTTTGAAGCTGCCGTGGTCAT
ATCTCTGTCACCTGATGGGAACGCTTTGACTGTGAAGATGGAAGTGACAA
ACAATAATAAGGACACGCCATTTTCGTTCACAACAGCGCTTCACTCGTAC
TTTTGTTGCGAATCACAAGAGACGGTACTGACTGAGTATTGTAGTCTGAC
CTACGCGGACAATATAGAATCTGGAAAGTCAAAGGTGCAAGAGGGGGATA
TTCATTTCGGGAAGGAGGTGGATCGCATCTACATTGGTACAAAGGACATG
CTGTCTATACCAACAGCAAACTTGAGTATCACGAAAGATAACATGCCCGA
TGCTGTTGTTTGGAATCCTTATATCGAGAAGGCAGCAGCGTTGTCCGATA
TGCCTAATGACGGCTGGAAGAATTTCATTTGTATCGAACCAGGTCGCATT
GCGGAACCCGCTAACGTGATGCCGAAGGAAACATGGACAGGCTCCGTCAC
TCTCCGTTCCATAGCGTAA
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