Ggra6163.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6163.t1
Unique NameGgra6163.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:722888..725840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6163Ggra6163Gracilaria gracilis GNS1m malegenetig00000045_pilon 722888..725840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1Ggra6163.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 722888..725840 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1.start1Ggra6163.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 722888..722890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1.CDS1Ggra6163.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 722888..723083 +
Ggra6163.t1.CDS2Ggra6163.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 724816..725268 +
Ggra6163.t1.CDS3Ggra6163.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000045_pilon 725431..725840 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1.exon1Ggra6163.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 722888..723083 +
Ggra6163.t1.exon2Ggra6163.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 724816..725268 +
Ggra6163.t1.exon3Ggra6163.t1.exon3Gracilaria gracilis GNS1m maleexontig00000045_pilon 725431..725840 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1.intron1Ggra6163.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 723084..724815 +
Ggra6163.t1.intron2Ggra6163.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000045_pilon 725269..725430 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6163.t1.stop1Ggra6163.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 725838..725840 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6163.t1 ID=Ggra6163.t1|Name=Ggra6163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MSPPGRLTPKSKAVEHLRTLLSSGTFSGKEDQSFVYKSDPVFTPYKLENF
SFAYNRIRRELGLQKSAGFAFDGATEPVYETVHVRNKVVPATRGNYIDFR
KHVVLFRKNGFRDELMVSATFLLLFSPGCSKSGFRSKTSYASTNDLQNLN
DIKWSYNDDRILNSTCVDEENGFEEEILLKLQAGLRAYTTEDCKSFLLGE
AVMQQQLTNIDAPAPNEREDTQALDTIAFLLYLLPETSFLLIRDKISSRV
EENGSVRKLVGERNVTEVKIGLLIPTFGLAMALLVAVATVAVVMWVRVVW
LRGRRGYNGFSTNADALACAAQALYWYADDEAERPEKVVIVREIQIRLIG
AA*
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spliced messenger RNA

>Ggra6163.t1 ID=Ggra6163.t1|Name=Ggra6163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000045_pilon:722888..725840+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCACCGGGGAGGCTCACGCCGAAGTCTAAAGCTGTCGAGCACCT
GCGCACTCTACTATCTTCCGGAACATTCTCAGGAAAAGAGGATCAGAGCT
TTGTATATAAGTCGGATCCCGTCTTTACCCCTTACAAGCTGGAAAATTTT
AGTTTCGCCTACAACCGGATTCGCCGCGAGCTCGGCCTTCAAAAATCTGC
CGGGTTCGCTTTCGACGGCGCCACTGAGCCCGTTTATGAAACAGTTCATG
TACGAAACAAAGTGGTGCCTGCTACTCGTGGAAACTATATCGACTTTCGA
AAACATGTAGTGCTGTTTCGAAAAAATGGATTCCGTGATGAGCTCATGGT
CTCGGCTACGTTTCTATTACTGTTCTCTCCAGGTTGCTCGAAAAGTGGAT
TTAGATCTAAAACATCATATGCGAGCACCAACGACTTGCAAAATCTGAAC
GATATTAAGTGGTCCTACAATGATGATCGCATCTTAAACTCTACCTGCGT
CGACGAGGAAAATGGGTTCGAGGAGGAGATCTTGCTCAAACTGCAAGCTG
GCCTACGAGCCTACACCACAGAAGACTGCAAATCGTTTTTGTTGGGGGAG
GCTGTCATGCAGCAACAACTGACTAACATAGACGCCCCAGCACCTAATGA
GAGGGAGGACACACAAGCACTTGACACCATTGCATTCTTGTTGTATTTGC
TCCCAGAAACCTCTTTCCTTTTAATCAGGGATAAAATTTCATCTCGGGTG
GAAGAAAATGGGAGCGTGCGAAAACTTGTGGGGGAACGAAATGTTACGGA
AGTGAAAATTGGATTGCTGATACCTACTTTCGGGTTAGCTATGGCGCTCT
TGGTGGCCGTGGCTACCGTAGCAGTAGTGATGTGGGTTCGTGTGGTGTGG
CTCAGGGGACGACGTGGGTACAATGGCTTCAGTACAAATGCAGATGCGTT
GGCATGCGCAGCGCAAGCGCTTTATTGGTATGCTGACGATGAAGCTGAGC
GCCCAGAAAAGGTTGTGATTGTGAGGGAGATACAAATTCGTTTGATCGGG
GCAGCGTAA
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protein sequence of Ggra6163.t1

>Ggra6163.t1 ID=Ggra6163.t1|Name=Ggra6163.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MSPPGRLTPKSKAVEHLRTLLSSGTFSGKEDQSFVYKSDPVFTPYKLENF
SFAYNRIRRELGLQKSAGFAFDGATEPVYETVHVRNKVVPATRGNYIDFR
KHVVLFRKNGFRDELMVSATFLLLFSPGCSKSGFRSKTSYASTNDLQNLN
DIKWSYNDDRILNSTCVDEENGFEEEILLKLQAGLRAYTTEDCKSFLLGE
AVMQQQLTNIDAPAPNEREDTQALDTIAFLLYLLPETSFLLIRDKISSRV
EENGSVRKLVGERNVTEVKIGLLIPTFGLAMALLVAVATVAVVMWVRVVW
LRGRRGYNGFSTNADALACAAQALYWYADDEAERPEKVVIVREIQIRLIG
AA*
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mRNA from alignment at tig00000045_pilon:722888..725840+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6163.t1 ID=Ggra6163.t1|Name=Ggra6163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2953bp|location=Sequence derived from alignment at tig00000045_pilon:722888..725840+ (Gracilaria gracilis GNS1m male)
ATGTCCCCACCGGGGAGGCTCACGCCGAAGTCTAAAGCTGTCGAGCACCT
GCGCACTCTACTATCTTCCGGAACATTCTCAGGAAAAGAGGATCAGAGCT
TTGTATATAAGTCGGATCCCGTCTTTACCCCTTACAAGCTGGAAAATTTT
AGTTTCGCCTACAACCGGATTCGCCGCGAGCTCGGCCTTCAAAAATGTAA
GTTTTTTTACTCTTTTGCCTTACTTTGTCCTATTCTGACATCATTGAGCT
TGTGAGTTTGGAGTCGTGGACTTAGAGGCGAAATGTACTGCGGATGAGGA
GAATTTGCCGGATACTAAACGTCAGAAAACAACACATACAGAACGCAACG
ATACTAAAGTAAAATACGTGCAGGAAGAGAATGGCAAAGAAACCTATTTT
GATGGATGCTTTAAGTTTTTTTATTTCTTTGGGATGTGAAAAGAGACAAA
GAGGAAAACAAAAAGTCTCTCGGTAGCTATTCTGCTTTTTTCTGGGGTAG
CAGCGAATGATTTTAAAGTGTATGTACTTTTTGGTGGAAGGGTCTTAGAG
ATGAGATGAGATTTGCTTGGCCGTCGGTATTCACTGACGTCAATGTGTTG
CATCTTCGTTAATTTAATCCAAAAAATGGGCAACACATTACAGATCACCA
TATTGAGCTCAATGCTTTTGAATCGTTCTACTGCAATCTGCGAGAGGGCA
GGTCTAATAAGGTGTATGCAGTGTCGCGTATTCGCCTAACATTTATTGTT
GAGACTCATATCTTGGAATCTCATTTGTTAGTTTGGCGAGAGAGCAAAGC
GAAGGGAGCTTACGTAGTGCTTCGTTCTCTTCGAGAGCAATATGCAACTA
CCAATGAAAAGAAAGATTTTGAAATTTATTGAACAATAAATACTTTATGT
TTTTGATGCTTTCACTTCCAATTATTTGCGCTTTCCTATATTGTTTTTGT
TCTACTCATCTATTCGGGGTTTTCCGCCCTTCCCAGGCCCATTTATTGTA
GAGTGGTTCCAGGTGGGCCTCGTAGCTCAGATCTCCGTGAGATCACTGGG
AGGTGCGGCAGCAAAGCTCGTGCTGGCACAGCAAAGTGCCAGCAGAGGAT
CAGTGGAGAGAGCGCCACATTTGCGGACTGCCACAGTTCCGTACTGCTCT
CCCTCACCGCTCCGCAATCCCTCATTAtcgacgttgatttttgaggtgtc
tacaggctggatctggacgaattaccggtggagatgacctcctcttcagc
gatatggcagtatgccgttataccgatagccaatgaaaaactcccacgtt
gttgcgaattatagcgttgcaccgttatagagtgcacttaatggagatgc
cctAAtacaataaaccacattttcacgaatttctgcgcgcatcttggagt
acgcaatttgcgactttgcgttggctcattgggcaTGAGATGGCTGGCTG
CATCGATGGCCGAGCTCCGGCTACGAAGAGCTTCCATGGCAGCAATGCGG
GCCACTCCGAGCGCCAAGCGCTCTGTTTCTGAAAACCAGTCATTTCTGCA
CATTTATATATCCGTAGGTGCCATAGTTTAGCACAGAACATAAGAGGTCA
CCTCAAAACGTCCATCTCGCTTCCGTGAACTGCTTTCTGGCCGTGCAGCT
CTCGCCGGTTGCAAAAACATTACTTACCATGCTCAATGTGGAATCCAACA
TTGTAACCTTTTGCTATAATCTAGTCACAGTGGTATTGTTCATACTGCTA
AGTCACCTCCTCCAACTTATCGCCTCCTGCTATAATCTGCGCACAATCTA
CGATGAGCGCAAACCGTTGAGTCTCAAAACCACCCGTCTCTCTCTGTTCA
TGGATGCCGGTTTGGCGCCTCGCTGTCTTTCCCGTCTATTGGTACTGCTT
GCCGTAATGTTTACGTTACTCTTGGCAGCTGCCGGGTTCGCTTTCGACGG
CGCCACTGAGCCCGTTTATGAAACAGTTCATGTACGAAACAAAGTGGTGC
CTGCTACTCGTGGAAACTATATCGACTTTCGAAAACATGTAGTGCTGTTT
CGAAAAAATGGATTCCGTGATGAGCTCATGGTCTCGGCTACGTTTCTATT
ACTGTTCTCTCCAGGTTGCTCGAAAAGTGGATTTAGATCTAAAACATCAT
ATGCGAGCACCAACGACTTGCAAAATCTGAACGATATTAAGTGGTCCTAC
AATGATGATCGCATCTTAAACTCTACCTGCGTCGACGAGGAAAATGGGTT
CGAGGAGGAGATCTTGCTCAAACTGCAAGCTGGCCTACGAGCCTACACCA
CAGAAGACTGCAAATCGTTTTTGTTGGGGGAGGCTGTCATGCAGCAACAA
CTGACTAACATAGACGCCCCAGCACCTAATGGTACCTGCCCCTTTTACGA
CGTGGAGATTCGTTGCTCAATACTCAAATTGCATTGCGTGGGGTCTGCGA
GAGTCCAAGATGACGTAGGCGGATTTTCGCTCTTCCACCTTTCTCTTTCA
CAAAAACGTGTAATAACCCGGTTCTCGGACGTGCGCTATAAAGAGAGGGA
GGACACACAAGCACTTGACACCATTGCATTCTTGTTGTATTTGCTCCCAG
AAACCTCTTTCCTTTTAATCAGGGATAAAATTTCATCTCGGGTGGAAGAA
AATGGGAGCGTGCGAAAACTTGTGGGGGAACGAAATGTTACGGAAGTGAA
AATTGGATTGCTGATACCTACTTTCGGGTTAGCTATGGCGCTCTTGGTGG
CCGTGGCTACCGTAGCAGTAGTGATGTGGGTTCGTGTGGTGTGGCTCAGG
GGACGACGTGGGTACAATGGCTTCAGTACAAATGCAGATGCGTTGGCATG
CGCAGCGCAAGCGCTTTATTGGTATGCTGACGATGAAGCTGAGCGCCCAG
AAAAGGTTGTGATTGTGAGGGAGATACAAATTCGTTTGATCGGGGCAGCG
TAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:722888..725840+

>Ggra6163.t1 ID=Ggra6163.t1|Name=Ggra6163.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000045_pilon:722888..725840+ (Gracilaria gracilis GNS1m male)
ATGTCCCCACCGGGGAGGCTCACGCCGAAGTCTAAAGCTGTCGAGCACCT
GCGCACTCTACTATCTTCCGGAACATTCTCAGGAAAAGAGGATCAGAGCT
TTGTATATAAGTCGGATCCCGTCTTTACCCCTTACAAGCTGGAAAATTTT
AGTTTCGCCTACAACCGGATTCGCCGCGAGCTCGGCCTTCAAAAATCTGC
CGGGTTCGCTTTCGACGGCGCCACTGAGCCCGTTTATGAAACAGTTCATG
TACGAAACAAAGTGGTGCCTGCTACTCGTGGAAACTATATCGACTTTCGA
AAACATGTAGTGCTGTTTCGAAAAAATGGATTCCGTGATGAGCTCATGGT
CTCGGCTACGTTTCTATTACTGTTCTCTCCAGGTTGCTCGAAAAGTGGAT
TTAGATCTAAAACATCATATGCGAGCACCAACGACTTGCAAAATCTGAAC
GATATTAAGTGGTCCTACAATGATGATCGCATCTTAAACTCTACCTGCGT
CGACGAGGAAAATGGGTTCGAGGAGGAGATCTTGCTCAAACTGCAAGCTG
GCCTACGAGCCTACACCACAGAAGACTGCAAATCGTTTTTGTTGGGGGAG
GCTGTCATGCAGCAACAACTGACTAACATAGACGCCCCAGCACCTAATGA
GAGGGAGGACACACAAGCACTTGACACCATTGCATTCTTGTTGTATTTGC
TCCCAGAAACCTCTTTCCTTTTAATCAGGGATAAAATTTCATCTCGGGTG
GAAGAAAATGGGAGCGTGCGAAAACTTGTGGGGGAACGAAATGTTACGGA
AGTGAAAATTGGATTGCTGATACCTACTTTCGGGTTAGCTATGGCGCTCT
TGGTGGCCGTGGCTACCGTAGCAGTAGTGATGTGGGTTCGTGTGGTGTGG
CTCAGGGGACGACGTGGGTACAATGGCTTCAGTACAAATGCAGATGCGTT
GGCATGCGCAGCGCAAGCGCTTTATTGGTATGCTGACGATGAAGCTGAGC
GCCCAGAAAAGGTTGTGATTGTGAGGGAGATACAAATTCGTTTGATCGGG
GCAGCGTAA
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