Ggra6143.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6143.t1
Unique NameGgra6143.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:654679..656143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07294
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue1.31e-12
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6143Ggra6143Gracilaria gracilis GNS1m malegenetig00000045_pilon 654679..656143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1Ggra6143.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 654679..656143 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1.start1Ggra6143.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 654679..654681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1.CDS1Ggra6143.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 654679..655917 +
Ggra6143.t1.CDS2Ggra6143.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 656042..656143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1.exon1Ggra6143.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 654679..655917 +
Ggra6143.t1.exon2Ggra6143.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 656042..656143 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1.intron1Ggra6143.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 655918..656041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6143.t1.stop1Ggra6143.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 656141..656143 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6143.t1 ID=Ggra6143.t1|Name=Ggra6143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp
MLMATNLGLLVAILSFCGTALGVKSPRVFSESYIEGVYGRFFEFSDEGNS
APCPQVIDHYHRGRPTALGDSWIIPHANIVQSGAKCRDGGVLVLNSYNES
SRMPNVLESNRIAEETFTLMKEESTGFWMGADERRCGKWVFPSRTYIFFV
KEFDRTLTTSFRLTLSPGKKYMFAVADQFTCIYVDIPRTKPVSPVTIATP
GGSTPSASTGPSAEDGTSTDKEPSNGPTPTPTSANTADETDEASADGGQD
STDGDSGSNETDDEGSDPNGGLSIVDVDNGQLPEETEDVAGGTIADIGTG
SNDEESVEATPDSFGVDVNNGESLCFPGDAQVEMIDGTFKQMTDLAIGDE
VRVGKQFSRVFMFTHKKAGSFNRFVQLETTSGRRLALTSGHMLYVNGIIK
AAKEVRVGDRLSLSTYKLLTRCYSPYAPYGMHLAWVLFRTVLTGQA*
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spliced messenger RNA

>Ggra6143.t1 ID=Ggra6143.t1|Name=Ggra6143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00000045_pilon:654679..656143+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAATGGCGACAAACCTTGGCCTTTTGGTGGCGATCTTGTCATTCTG
TGGTACAGCACTTGGAGTGAAATCTCCTCGCGTCTTTTCCGAAAGTTACA
TTGAAGGCGTGTACGGAAGATTCTTCGAGTTCTCGGACGAAGGTAATTCT
GCCCCATGCCCGCAGGTTATAGATCACTATCACCGAGGTCGGCCAACCGC
TCTTGGCGACTCCTGGATAATACCACATGCGAACATTGTTCAGAGCGGCG
CAAAGTGTCGTGACGGGGGCGTTTTGGTCCTCAACTCCTACAATGAATCA
AGCCGGATGCCAAATGTCCTAGAATCAAATCGCATTGCCGAGGAAACATT
TACGCTAATGAAGGAAGAATCTACCGGTTTCTGGATGGGTGCTGATGAAC
GAAGATGTGGAAAATGGGTCTTCCCTAGTCGCACCTATATCTTCTTTGTC
AAAGAATTTGATCGCACATTGACAACATCCTTCCGGCTTACCCTCTCACC
GGGTAAGAAGTACATGTTCGCCGTTGCTGATCAATTCACATGCATCTACG
TTGACATACCTAGAACAAAGCCTGTTTCCCCAGTAACCATTGCCACTCCT
GGCGGTTCTACACCATCAGCGAGCACTGGACCGAGCGCGGAGGACGGCAC
TTCCACTGACAAAGAGCCTTCGAATGGACCAACTCCAACACCTACCTCTG
CAAACACTGCAGACGAAACCGATGAGGCTTCCGCGGACGGAGGCCAAGAT
TCGACAGACGGTGATTCAGGATCAAACGAGACGGACGACGAAGGCAGTGA
TCCAAACGGAGGACTCTCTATCGTCGATGTAGACAATGGACAGCTTCCCG
AAGAAACTGAAGACGTGGCAGGGGGAACTATTGCGGACATAGGTACAGGT
AGCAACGATGAAGAAAGTGTAGAGGCAACGCCAGATTCATTTGGCGTTGA
TGTGAACAATGGGGAGTCGCTCTGTTTCCCAGGGGACGCGCAGGTTGAGA
TGATTGATGGAACCTTCAAGCAAATGACTGATCTTGCTATTGGAGATGAA
GTCCGAGTTGGAAAACAGTTCTCTCGAGTATTCATGTTCACCCACAAAAA
GGCGGGTTCTTTCAACAGATTCGTCCAGTTGGAGACAACTTCTGGCCGGA
GACTGGCGCTAACCAGCGGTCACATGCTGTACGTCAACGGAATCATTAAG
GCGGCCAAGGAGGTTCGGGTTGGAGACAGATTGAGTCTAtcgacttacaa
actgctcactcgatgctactccCCATACGCGCCCTATGGAATGCACTTGG
CTTGGGTGTTGTTCCGAACAGTGTTAACTGGTCAGGCATGA
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protein sequence of Ggra6143.t1

>Ggra6143.t1 ID=Ggra6143.t1|Name=Ggra6143.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=447bp
MLMATNLGLLVAILSFCGTALGVKSPRVFSESYIEGVYGRFFEFSDEGNS
APCPQVIDHYHRGRPTALGDSWIIPHANIVQSGAKCRDGGVLVLNSYNES
SRMPNVLESNRIAEETFTLMKEESTGFWMGADERRCGKWVFPSRTYIFFV
KEFDRTLTTSFRLTLSPGKKYMFAVADQFTCIYVDIPRTKPVSPVTIATP
GGSTPSASTGPSAEDGTSTDKEPSNGPTPTPTSANTADETDEASADGGQD
STDGDSGSNETDDEGSDPNGGLSIVDVDNGQLPEETEDVAGGTIADIGTG
SNDEESVEATPDSFGVDVNNGESLCFPGDAQVEMIDGTFKQMTDLAIGDE
VRVGKQFSRVFMFTHKKAGSFNRFVQLETTSGRRLALTSGHMLYVNGIIK
AAKEVRVGDRLSLSTYKLLTRCYSPYAPYGMHLAWVLFRTVLTGQA*
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mRNA from alignment at tig00000045_pilon:654679..656143+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6143.t1 ID=Ggra6143.t1|Name=Ggra6143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1465bp|location=Sequence derived from alignment at tig00000045_pilon:654679..656143+ (Gracilaria gracilis GNS1m male)
ATGCTAATGGCGACAAACCTTGGCCTTTTGGTGGCGATCTTGTCATTCTG
TGGTACAGCACTTGGAGTGAAATCTCCTCGCGTCTTTTCCGAAAGTTACA
TTGAAGGCGTGTACGGAAGATTCTTCGAGTTCTCGGACGAAGGTAATTCT
GCCCCATGCCCGCAGGTTATAGATCACTATCACCGAGGTCGGCCAACCGC
TCTTGGCGACTCCTGGATAATACCACATGCGAACATTGTTCAGAGCGGCG
CAAAGTGTCGTGACGGGGGCGTTTTGGTCCTCAACTCCTACAATGAATCA
AGCCGGATGCCAAATGTCCTAGAATCAAATCGCATTGCCGAGGAAACATT
TACGCTAATGAAGGAAGAATCTACCGGTTTCTGGATGGGTGCTGATGAAC
GAAGATGTGGAAAATGGGTCTTCCCTAGTCGCACCTATATCTTCTTTGTC
AAAGAATTTGATCGCACATTGACAACATCCTTCCGGCTTACCCTCTCACC
GGGTAAGAAGTACATGTTCGCCGTTGCTGATCAATTCACATGCATCTACG
TTGACATACCTAGAACAAAGCCTGTTTCCCCAGTAACCATTGCCACTCCT
GGCGGTTCTACACCATCAGCGAGCACTGGACCGAGCGCGGAGGACGGCAC
TTCCACTGACAAAGAGCCTTCGAATGGACCAACTCCAACACCTACCTCTG
CAAACACTGCAGACGAAACCGATGAGGCTTCCGCGGACGGAGGCCAAGAT
TCGACAGACGGTGATTCAGGATCAAACGAGACGGACGACGAAGGCAGTGA
TCCAAACGGAGGACTCTCTATCGTCGATGTAGACAATGGACAGCTTCCCG
AAGAAACTGAAGACGTGGCAGGGGGAACTATTGCGGACATAGGTACAGGT
AGCAACGATGAAGAAAGTGTAGAGGCAACGCCAGATTCATTTGGCGTTGA
TGTGAACAATGGGGAGTCGCTCTGTTTCCCAGGGGACGCGCAGGTTGAGA
TGATTGATGGAACCTTCAAGCAAATGACTGATCTTGCTATTGGAGATGAA
GTCCGAGTTGGAAAACAGTTCTCTCGAGTATTCATGTTCACCCACAAAAA
GGCGGGTTCTTTCAACAGATTCGTCCAGTTGGAGACAACTTCTGGCCGGA
GACTGGCGCTAACCAGCGGTCACATGCTGTACGTCAACGGAATCATTAAG
GCGGCCAAGGAGGTTCGGGTTGGAGACAGATTGAGTCTAGTCCATGCAAC
TGATCAAGTAATCAAAGTCTCCACAGCCATcaaaaaagggctgttcaacc
cacaaactgtacatggtgacattgtagtcaacggattgttgacatcaact
tacacgacagcagtcgacttacaaactgctcactcgatgctactccCCAT
ACGCGCCCTATGGAATGCACTTGGCTTGGGTGTTGTTCCGAACAGTGTTA
ACTGGTCAGGCATGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:654679..656143+

>Ggra6143.t1 ID=Ggra6143.t1|Name=Ggra6143.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00000045_pilon:654679..656143+ (Gracilaria gracilis GNS1m male)
ATGCTAATGGCGACAAACCTTGGCCTTTTGGTGGCGATCTTGTCATTCTG
TGGTACAGCACTTGGAGTGAAATCTCCTCGCGTCTTTTCCGAAAGTTACA
TTGAAGGCGTGTACGGAAGATTCTTCGAGTTCTCGGACGAAGGTAATTCT
GCCCCATGCCCGCAGGTTATAGATCACTATCACCGAGGTCGGCCAACCGC
TCTTGGCGACTCCTGGATAATACCACATGCGAACATTGTTCAGAGCGGCG
CAAAGTGTCGTGACGGGGGCGTTTTGGTCCTCAACTCCTACAATGAATCA
AGCCGGATGCCAAATGTCCTAGAATCAAATCGCATTGCCGAGGAAACATT
TACGCTAATGAAGGAAGAATCTACCGGTTTCTGGATGGGTGCTGATGAAC
GAAGATGTGGAAAATGGGTCTTCCCTAGTCGCACCTATATCTTCTTTGTC
AAAGAATTTGATCGCACATTGACAACATCCTTCCGGCTTACCCTCTCACC
GGGTAAGAAGTACATGTTCGCCGTTGCTGATCAATTCACATGCATCTACG
TTGACATACCTAGAACAAAGCCTGTTTCCCCAGTAACCATTGCCACTCCT
GGCGGTTCTACACCATCAGCGAGCACTGGACCGAGCGCGGAGGACGGCAC
TTCCACTGACAAAGAGCCTTCGAATGGACCAACTCCAACACCTACCTCTG
CAAACACTGCAGACGAAACCGATGAGGCTTCCGCGGACGGAGGCCAAGAT
TCGACAGACGGTGATTCAGGATCAAACGAGACGGACGACGAAGGCAGTGA
TCCAAACGGAGGACTCTCTATCGTCGATGTAGACAATGGACAGCTTCCCG
AAGAAACTGAAGACGTGGCAGGGGGAACTATTGCGGACATAGGTACAGGT
AGCAACGATGAAGAAAGTGTAGAGGCAACGCCAGATTCATTTGGCGTTGA
TGTGAACAATGGGGAGTCGCTCTGTTTCCCAGGGGACGCGCAGGTTGAGA
TGATTGATGGAACCTTCAAGCAAATGACTGATCTTGCTATTGGAGATGAA
GTCCGAGTTGGAAAACAGTTCTCTCGAGTATTCATGTTCACCCACAAAAA
GGCGGGTTCTTTCAACAGATTCGTCCAGTTGGAGACAACTTCTGGCCGGA
GACTGGCGCTAACCAGCGGTCACATGCTGTACGTCAACGGAATCATTAAG
GCGGCCAAGGAGGTTCGGGTTGGAGACAGATTGAGTCTAtcgacttacaa
actgctcactcgatgctactccCCATACGCGCCCTATGGAATGCACTTGG
CTTGGGTGTTGTTCCGAACAGTGTTAACTGGTCAGGCATGA
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