Ggra6135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6135.t1
Unique NameGgra6135.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:632035..633285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6135Ggra6135Gracilaria gracilis GNS1m malegenetig00000045_pilon 632035..633285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1Ggra6135.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 632035..633285 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1.start1Ggra6135.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 632035..632037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1.CDS1Ggra6135.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 632035..632853 +
Ggra6135.t1.CDS2Ggra6135.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 632974..633285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1.exon1Ggra6135.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 632035..632853 +
Ggra6135.t1.exon2Ggra6135.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 632974..633285 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1.intron1Ggra6135.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 632854..632973 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6135.t1.stop1Ggra6135.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 633283..633285 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6135.t1 ID=Ggra6135.t1|Name=Ggra6135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=377bp
MGAQVQLAADGAQLARVLLSATVTVLLLCSPFSSESECAVRTLSRAASLT
TCPSVQYVQYVLRPGESVQAAPRRWLPFGAASHAAVANLTQLPPLFPFVR
VFHSQLPPHVHHFGDSLDAFVLARFICDVCGVDVDLPPVLSRDAFARAVR
RNALGALLIVPMHQARLQPKHRRLADAILNGALSAASWWELSLVDSLKDE
LFARRVGDHSLLFVQLGDDKAVLHALSHVTEHNVRALMQRFERLPPRTVL
PDAALVADKQLSYFDGVSGARALTWCAHCQRIMPVYERFARVARASEADV
RVLLLQEADALPPFLERLVDGFPTVLRLQQSHGVREVHEYVGQHELHHLM
HEHEREQSERLLAAERALRLLQAASL*
back to top

spliced messenger RNA

>Ggra6135.t1 ID=Ggra6135.t1|Name=Ggra6135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000045_pilon:632035..633285+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGCAGGTGCAGCTCGCTGCGGACGGCGCGCAGCTGGCGCGCGT
GTTGTTGTCCGCCACCGTCACCGTGCTGCTGCTGTGCAGCCCGTTCTCGT
CCGAGAGCGAGTGCGCTGTGCGCACGCTTTCTCGCGCCGCGTCGCTCACC
ACCTGCCCGTCCGTGCAGTACGTGCAGTATGTGCTGCGCCCCGGCGAGAG
CGTGCAGGCGGCGCCGCGGCGATGGCTTCCGTTCGGCGCCGCTTCTCACG
CGGCCGTGGCCAATCTCACGCAGTTGCCGCCGCTGTTCCCGTTCGTGCGC
GTGTTTCACAGCCAACTGCCGCCGCACGTGCACCACTTTGGCGACTCGTT
GGACGCGTTTGTGCTGGCGCGCTTCATCTGCGACGTGTGCGGCGTGGACG
TGGATTTGCCGCCCGTGCTGTCGCGCGACGCGTTTGCGCGCGCCGTGAGA
CGCAATGCGTTGGGCGCGCTGTTGATCGTGCCCATGCACCAAGCGCGACT
GCAGCCGAAGCACCGCCGGCTCGCGGACGCCATTTTGAACGGCGCGCTGT
CCGCCGCGTCGTGGTGGGAGCTTTCGTTGGTGGACTCGCTCAAGGACGAG
CTGTTTGCGCGGCGCGTCGGCGATCATTCGCTGCTGTTTGTGCAGCTGGG
CGATGATAAGGCAGTGCTGCACGCCTTGTCGCACGTTACGGAGCATAACG
TGCGCGCGCTCATGCAGCGCTTTGAACGGCTGCCGCCTCGCACCGTGCTG
CCAGACGCGGCGCTTGTCGCCGACAAGCAGCTGTCGTACTTTGATGGCGT
TTCTGGCGCGCGCGCTTTGacatggtgcgcgCATTGCCAACGAATCATGC
CCGTGTACGAGCGCTTTGCGCGCGTGGCTCGCGCCAGTGAGGCGGACGTG
CGCGTGCTGCTGCTGCAAGAGGCGGACGCTTTGCCGCCGTTCCTGGAGCG
GCTGGTGGACGGATTCCCCACCGTGCTGCGACTGCAGCAGTCGCACGGCG
TGCGCGAGGTGCACGAGTACGTGGGGCAACATGAGCTGCACCATCTGATG
CACGAGCACGAGCGCGAGCAGAGCGAGCGACTGCTGGCGGCGGAGCGCGC
GCTGCGGCTGCTGCAGGCGGCGTCGCTGTAG
back to top

protein sequence of Ggra6135.t1

>Ggra6135.t1 ID=Ggra6135.t1|Name=Ggra6135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MGAQVQLAADGAQLARVLLSATVTVLLLCSPFSSESECAVRTLSRAASLT
TCPSVQYVQYVLRPGESVQAAPRRWLPFGAASHAAVANLTQLPPLFPFVR
VFHSQLPPHVHHFGDSLDAFVLARFICDVCGVDVDLPPVLSRDAFARAVR
RNALGALLIVPMHQARLQPKHRRLADAILNGALSAASWWELSLVDSLKDE
LFARRVGDHSLLFVQLGDDKAVLHALSHVTEHNVRALMQRFERLPPRTVL
PDAALVADKQLSYFDGVSGARALTWCAHCQRIMPVYERFARVARASEADV
RVLLLQEADALPPFLERLVDGFPTVLRLQQSHGVREVHEYVGQHELHHLM
HEHEREQSERLLAAERALRLLQAASL*
back to top

mRNA from alignment at tig00000045_pilon:632035..633285+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6135.t1 ID=Ggra6135.t1|Name=Ggra6135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000045_pilon:632035..633285+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGCAGGTGCAGCTCGCTGCGGACGGCGCGCAGCTGGCGCGCGT
GTTGTTGTCCGCCACCGTCACCGTGCTGCTGCTGTGCAGCCCGTTCTCGT
CCGAGAGCGAGTGCGCTGTGCGCACGCTTTCTCGCGCCGCGTCGCTCACC
ACCTGCCCGTCCGTGCAGTACGTGCAGTATGTGCTGCGCCCCGGCGAGAG
CGTGCAGGCGGCGCCGCGGCGATGGCTTCCGTTCGGCGCCGCTTCTCACG
CGGCCGTGGCCAATCTCACGCAGTTGCCGCCGCTGTTCCCGTTCGTGCGC
GTGTTTCACAGCCAACTGCCGCCGCACGTGCACCACTTTGGCGACTCGTT
GGACGCGTTTGTGCTGGCGCGCTTCATCTGCGACGTGTGCGGCGTGGACG
TGGATTTGCCGCCCGTGCTGTCGCGCGACGCGTTTGCGCGCGCCGTGAGA
CGCAATGCGTTGGGCGCGCTGTTGATCGTGCCCATGCACCAAGCGCGACT
GCAGCCGAAGCACCGCCGGCTCGCGGACGCCATTTTGAACGGCGCGCTGT
CCGCCGCGTCGTGGTGGGAGCTTTCGTTGGTGGACTCGCTCAAGGACGAG
CTGTTTGCGCGGCGCGTCGGCGATCATTCGCTGCTGTTTGTGCAGCTGGG
CGATGATAAGGCAGTGCTGCACGCCTTGTCGCACGTTACGGAGCATAACG
TGCGCGCGCTCATGCAGCGCTTTGAACGGCTGCCGCCTCGCACCGTGCTG
CCAGACGCGGCGCTTGTCGCCGACAAGCAGCTGTCGTACTTTGATGGCGT
TTCTGGCGCGCGCGCTTTGGTGCGTTTTGCGCAAAGTGCGCTTTCGCTGC
GCGCGTTCGTGGAAGGCGATTATTcggcggcaacggcggcggcggcggcg
gctactgaggcggcggttttgtgggtggttgtgatacagacatggtgcgc
gCATTGCCAACGAATCATGCCCGTGTACGAGCGCTTTGCGCGCGTGGCTC
GCGCCAGTGAGGCGGACGTGCGCGTGCTGCTGCTGCAAGAGGCGGACGCT
TTGCCGCCGTTCCTGGAGCGGCTGGTGGACGGATTCCCCACCGTGCTGCG
ACTGCAGCAGTCGCACGGCGTGCGCGAGGTGCACGAGTACGTGGGGCAAC
ATGAGCTGCACCATCTGATGCACGAGCACGAGCGCGAGCAGAGCGAGCGA
CTGCTGGCGGCGGAGCGCGCGCTGCGGCTGCTGCAGGCGGCGTCGCTGTA
G
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:632035..633285+

>Ggra6135.t1 ID=Ggra6135.t1|Name=Ggra6135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00000045_pilon:632035..633285+ (Gracilaria gracilis GNS1m male)
ATGGGCGCGCAGGTGCAGCTCGCTGCGGACGGCGCGCAGCTGGCGCGCGT
GTTGTTGTCCGCCACCGTCACCGTGCTGCTGCTGTGCAGCCCGTTCTCGT
CCGAGAGCGAGTGCGCTGTGCGCACGCTTTCTCGCGCCGCGTCGCTCACC
ACCTGCCCGTCCGTGCAGTACGTGCAGTATGTGCTGCGCCCCGGCGAGAG
CGTGCAGGCGGCGCCGCGGCGATGGCTTCCGTTCGGCGCCGCTTCTCACG
CGGCCGTGGCCAATCTCACGCAGTTGCCGCCGCTGTTCCCGTTCGTGCGC
GTGTTTCACAGCCAACTGCCGCCGCACGTGCACCACTTTGGCGACTCGTT
GGACGCGTTTGTGCTGGCGCGCTTCATCTGCGACGTGTGCGGCGTGGACG
TGGATTTGCCGCCCGTGCTGTCGCGCGACGCGTTTGCGCGCGCCGTGAGA
CGCAATGCGTTGGGCGCGCTGTTGATCGTGCCCATGCACCAAGCGCGACT
GCAGCCGAAGCACCGCCGGCTCGCGGACGCCATTTTGAACGGCGCGCTGT
CCGCCGCGTCGTGGTGGGAGCTTTCGTTGGTGGACTCGCTCAAGGACGAG
CTGTTTGCGCGGCGCGTCGGCGATCATTCGCTGCTGTTTGTGCAGCTGGG
CGATGATAAGGCAGTGCTGCACGCCTTGTCGCACGTTACGGAGCATAACG
TGCGCGCGCTCATGCAGCGCTTTGAACGGCTGCCGCCTCGCACCGTGCTG
CCAGACGCGGCGCTTGTCGCCGACAAGCAGCTGTCGTACTTTGATGGCGT
TTCTGGCGCGCGCGCTTTGacatggtgcgcgCATTGCCAACGAATCATGC
CCGTGTACGAGCGCTTTGCGCGCGTGGCTCGCGCCAGTGAGGCGGACGTG
CGCGTGCTGCTGCTGCAAGAGGCGGACGCTTTGCCGCCGTTCCTGGAGCG
GCTGGTGGACGGATTCCCCACCGTGCTGCGACTGCAGCAGTCGCACGGCG
TGCGCGAGGTGCACGAGTACGTGGGGCAACATGAGCTGCACCATCTGATG
CACGAGCACGAGCGCGAGCAGAGCGAGCGACTGCTGGCGGCGGAGCGCGC
GCTGCGGCTGCTGCAGGCGGCGTCGCTGTAG
back to top