Ggra6134.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6134.t1
Unique NameGgra6134.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:630921..631623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1125863.JAFN01000001_gene3529
PFAMsAda_Zn_binding,Excalibur,SNase
Max annot lvl28221|Deltaproteobacteria
Evalue1.71e-28
EggNOG OGsCOG1525@1|root,COG1525@2|Bacteria,1N145@1224|Proteobacteria,42SG5@68525|delta/epsilon subdivisions,2WNPI@28221|Deltaproteobacteria
DescriptionPFAM nuclease (SNase domain protein)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6134Ggra6134Gracilaria gracilis GNS1m malegenetig00000045_pilon 630921..631623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1Ggra6134.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 630921..631623 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1.stop1Ggra6134.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 630921..630923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1.CDS1Ggra6134.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 630921..631227 -
Ggra6134.t1.CDS2Ggra6134.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 631313..631623 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1.exon1Ggra6134.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 630921..631227 -
Ggra6134.t1.exon2Ggra6134.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 631313..631623 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1.intron1Ggra6134.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 631228..631312 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6134.t1.start1Ggra6134.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 631621..631623 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6134.t1 ID=Ggra6134.t1|Name=Ggra6134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MGSCLSICLPADKPQQQPQQQSPLSYAAAVAQTAAQTVSELIQQPQHAVP
TGAEGKQVIRGAYVFKMPDGDTFNCDYTDASGDKATARVRVMAIDCPETK
QNFGQQAKQIGQQLLLRTNVTLYVHTTDRYGRLVADVITSDGVNYGEYLL
QQGAAWHYKAYDKREHLAHMETEARNAKIGLWSFPRPLEPWEYRRRKRNN
NNNNK*
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spliced messenger RNA

>Ggra6134.t1 ID=Ggra6134.t1|Name=Ggra6134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000045_pilon:630921..631623- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTTGTCTCTCCATCTGCCTGCCGGCTGACAAGCCTCAGCAGCA
GCCGCAACAACAGTCTCCCTTGTCGTATGCCGCCGCCGTCGCGCAAACCG
CTGCGCAAACCGTCTCCGAGCTCATTCAGCAGCCGCAACATGCGGTGCCA
ACTGGCGCGGAGGGAAAGCAGGTCATTCGCGGCGCATACGTCTTTAAGAT
GCCGGATGGCGACACTTTCAATTGCGACTACACAGATGCTTCCGGCGACA
AGGCTACCGCTCGAGTGCGCGTCATGGCCATAGATTGTCCGGAAACCAAG
CAGAACTTTGGACAGCAGGCCAAACAGATTGGACAACAGTTGTTGCTTCG
AACCAACGTTACCTTGTATGTCCATACCACCGACCGATACGGCCGACTCG
TTGCCGATGTCATCACAAGTGATGGCGTCAATTACGGCGAATACTTGCTT
CAGCAAGGTGCAGCCTGGCACTACAAAGCATATGACAAACGAGAACACCT
CGCGCACATGGAGACGGAGGCCCGAAACGCCAAAATTGGCCTGTGGTCAT
TTCCGCGTCCGTTGGAGCCCTGGGAGTATCGACGTCGCAAACGTAACAAC
AACAACAACAACAAGTAG
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protein sequence of Ggra6134.t1

>Ggra6134.t1 ID=Ggra6134.t1|Name=Ggra6134.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MGSCLSICLPADKPQQQPQQQSPLSYAAAVAQTAAQTVSELIQQPQHAVP
TGAEGKQVIRGAYVFKMPDGDTFNCDYTDASGDKATARVRVMAIDCPETK
QNFGQQAKQIGQQLLLRTNVTLYVHTTDRYGRLVADVITSDGVNYGEYLL
QQGAAWHYKAYDKREHLAHMETEARNAKIGLWSFPRPLEPWEYRRRKRNN
NNNNK*
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mRNA from alignment at tig00000045_pilon:630921..631623-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6134.t1 ID=Ggra6134.t1|Name=Ggra6134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=703bp|location=Sequence derived from alignment at tig00000045_pilon:630921..631623- (Gracilaria gracilis GNS1m male)
ATGGGCTCTTGTCTCTCCATCTGCCTGCCGGCTGACAAGCCTCAGCAGCA
GCCGCAACAACAGTCTCCCTTGTCGTATGCCGCCGCCGTCGCGCAAACCG
CTGCGCAAACCGTCTCCGAGCTCATTCAGCAGCCGCAACATGCGGTGCCA
ACTGGCGCGGAGGGAAAGCAGGTCATTCGCGGCGCATACGTCTTTAAGAT
GCCGGATGGCGACACTTTCAATTGCGACTACACAGATGCTTCCGGCGACA
AGGCTACCGCTCGAGTGCGCGTCATGGCCATAGATTGTCCGGAAACCAAG
CAGAACTTTGGGTACGTCCTTCCTTGCATTGCATGTACTCTCTTTTACCT
CTTTGTTGGCTGTGTGTACTCACTCACCCGTGTGTTCCTCTTGCAGACAG
CAGGCCAAACAGATTGGACAACAGTTGTTGCTTCGAACCAACGTTACCTT
GTATGTCCATACCACCGACCGATACGGCCGACTCGTTGCCGATGTCATCA
CAAGTGATGGCGTCAATTACGGCGAATACTTGCTTCAGCAAGGTGCAGCC
TGGCACTACAAAGCATATGACAAACGAGAACACCTCGCGCACATGGAGAC
GGAGGCCCGAAACGCCAAAATTGGCCTGTGGTCATTTCCGCGTCCGTTGG
AGCCCTGGGAGTATCGACGTCGCAAACGTAACAACAACAACAACAACAAG
TAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:630921..631623-

>Ggra6134.t1 ID=Ggra6134.t1|Name=Ggra6134.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000045_pilon:630921..631623- (Gracilaria gracilis GNS1m male)
ATGGGCTCTTGTCTCTCCATCTGCCTGCCGGCTGACAAGCCTCAGCAGCA
GCCGCAACAACAGTCTCCCTTGTCGTATGCCGCCGCCGTCGCGCAAACCG
CTGCGCAAACCGTCTCCGAGCTCATTCAGCAGCCGCAACATGCGGTGCCA
ACTGGCGCGGAGGGAAAGCAGGTCATTCGCGGCGCATACGTCTTTAAGAT
GCCGGATGGCGACACTTTCAATTGCGACTACACAGATGCTTCCGGCGACA
AGGCTACCGCTCGAGTGCGCGTCATGGCCATAGATTGTCCGGAAACCAAG
CAGAACTTTGGACAGCAGGCCAAACAGATTGGACAACAGTTGTTGCTTCG
AACCAACGTTACCTTGTATGTCCATACCACCGACCGATACGGCCGACTCG
TTGCCGATGTCATCACAAGTGATGGCGTCAATTACGGCGAATACTTGCTT
CAGCAAGGTGCAGCCTGGCACTACAAAGCATATGACAAACGAGAACACCT
CGCGCACATGGAGACGGAGGCCCGAAACGCCAAAATTGGCCTGTGGTCAT
TTCCGCGTCCGTTGGAGCCCTGGGAGTATCGACGTCGCAAACGTAACAAC
AACAACAACAACAAGTAG
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