Ggra6131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6131.t1
Unique Name	Ggra6131.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:624398..626452 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6131	Ggra6131	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 624398..626452 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6131.t1.stop1	Ggra6131.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 624398..624400 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6131.t1.CDS1	Ggra6131.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 624398..626452 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6131.t1.exon1	Ggra6131.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 624398..626452 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6131.t1.start1	Ggra6131.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 626450..626452 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6131.t1	Ggra6131.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 624398..626452 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:624398..626452-
coding sequence from alignment at tig00000045_pilon:624398..626452-

mRNA sequence

>Ggra6131.t1 ID=Ggra6131.t1|Name=Ggra6131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=685bp
MLYSDHVVFHVGAQKLKNAGPNTTYRPKGFFSSSNSTALLHMVNPYIRRA
KNSFRRLKFSTRFAVFPIALSILVAFFVSSNTISPSLTIEPHFKPSSNDS
TEYTNWEMKGTDFGMNGEKTLQDSKLVYAHDSRPNTSGPLHSALTPSTKP
NTVIDDKNHHPSLSLDKEPKITTPAENHASHQSKQKSRIHNRESHVMSAT
AKKPSNGKKSNDAISTPPRHPHEKTSQSNIGHKHRRFHFDETSFSELPDG
KPLIDKEFTAFKPTRSRTTDVRLISLQNVCYCTQRNKFLVPRLSRDRKTR
FPGYLYRYGAALSVSWKRKSQILASPDQKVVHIDGTTIIWRGRSIHSYTN
HLQPSLIPMRSLLDTLKKTKYTGNVRVAAESFTPSAGQEIVVRKAYDYFL
GDVPEENRIELARLRPRLLCFERVLALGSEFEGHAKSVESYEAVKGLIEK
HEGSALKGKLARTCKDVGTTKKTIWVLERQEQHTHAGTVSNSAEVREAIQ
HELVKAHIDDKVDIQFIQSPSLPCPKGTKRAGCFDSMCSRDEHIRNGAED
QHCHHHPSILPEALTFNKMTFLVTVTGRVNEGVIYMPRGAQVIEVLPHGI
LDHSFESLAKDARLKHYRLENRHFKNTELLMYDRFGDVARNLHSCWADLE
CREFRRTRATHIDVHHLKLLVRKALVDWKKTCEL*

spliced messenger RNA

>Ggra6131.t1 ID=Ggra6131.t1|Name=Ggra6131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00000045_pilon:624398..626452- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTACAGCGACCACGTTGTTTTCCATGTTGGTGCTCAGAAGTTGAA
GAACGCGGGACCGAATACTACGTATCGTCCCAAGGGCTTCTTCTCCAGCT
CAAACTCGACAGCTCTTCTTCATATGGTTAATCCATACATCCGGCGGGCA
AAGAATAGCTTCCGCCGCTTAAAGTTTTCTACGAGATTTGCTGTGTTCCC
TATCGCTCTGTCTATTCTAGTTGCGTTCTTCGTGTCTTCGAATACCATCT
CACCTTCATTGACCATCGAACCTCATTTCAAACCTTCATCAAACGACTCC
ACCGAGTACACTAATTGGGAGATGAAGGGAACTGACTTTGGAATGAACGG
AGAGAAGACCTTGCAAGATTCGAAACTCGTATATGCCCATGATTCACGTC
CAAATACATCTGGGCCTCTACATTCTGCACTCACTCCGTCGACTAAACCG
AATACTGTTATTGACGATAAGAATCATCACCCTAGTCTTTCCCTTGATAA
GGAACCCAAAATCACTACACCGGCTGAAAACCATGCTTCTCATCAAAGCA
AGCAAAAATCCCGAATCCATAACAGGGAAAGCCACGTCATGTCAGCAACG
GCCAAGAAACCATCGAATGGGAAGAAGTCTAATGACGCTATTTCCACACC
ACCTCGACATCCCCACGAGAAAACCAGCCAATCGAACATCGGTCATAAAC
ACCGCCGTTTTCACTTTGACGAGACAAGCTTCTCGGAGCTTCCAGACGGT
AAACCGTTGATTGACAAAGAGTTTACCGCGTTCAAGCCTACAAGATCCCG
AACCACAGACGTTCGCCTGATTTCTCTGCAGAATGTGTGTTACTGTACGC
AACGAAACAAATTCCTCGTACCGAGATTGAGCAGGGACAGAAAGACTAGG
TTTCCAGGATATCTCTATCGCTATGGCGCAGCTTTGAGCGTGTCTTGGAA
GAGAAAGTCGCAAATATTGGCCAGTCCAGATCAGAAGGTCGTTCATATCG
ACGGGACAACTATCATTTGGCGTGGTCGATCAATCCATTCCTATACAAAT
CACCTGCAACCATCTCTTATTCCTATGCGCTCATTGCTTGATACTTTGAA
AAAGACGAAGTATACTGGTAATGTGAGGGTTGCGGCTGAGTCCTTCACCC
CATCAGCAGGGCAGGAAATTGTGGTTCGTAAAGCGTATGACTACTTTCTC
GGAGATGTTCCGGAAGAGAACAGGATTGAGCTTGCTCGTTTACGACCTCG
ACTACTATGCTTTGAGCGAGTTCTTGCTCTTGGATCTGAATTTGAAGGTC
ATGCTAAATCCGTTGAGTCCTATGAAGCCGTTAAAGGACTAATTGAAAAG
CATGAAGGTTCCGCTTTGAAGGGCAAACTCGCAAGAACCTGCAAAGATGT
GGGTACTACGAAGAAGACAATATGGGTTCTGGAACGTCAAGAGCAACATA
CTCATGCGGGCACTGTATCGAACTCCGCGGAAGTGAGGGAGGCGATACAG
CATGAGCTGGTAAAGGCGCATATAGACGACAAAGTTGACATACAGTTTAT
TCAATCACCTTCACTTCCATGTCCAAAGGGAACGAAACGAGCTGGATGTT
TCGACTCCATGTGCTCTCGCGACGAACATATCAGAAATGGCGCTGAAGAT
CAACATTGTCACCACCACCCCTCTATTCTACCTGAAGCTCTTACATTCAA
TAAGATGACGTTCTTGGTTACCGTCACTGGACGTGTAAACGAAGGAGTGA
TCTACATGCCTAGAGGTGCACAGGTAATCGAGGTACTTCCGCATGGAATC
CTTGATCATTCCTTTGAAAGTCTTGCTAAAGATGCGCGATTGAAACACTA
CAGACTGGAGAACCGACACTTCAAGAATACCGAATTGCTTATGTACGACC
GATTCGGGGATGTGGCTCGAAACTTACACTCGTGTTGGGCGGATCTAGAG
TGCAGGGAGTTTAGGCGGACTCGCGCCACTCACATAGACGTGCATCACCT
TAAGCTTCTTGTTCGAAAGGCACTCGTAGATTGGAAGAAGACTTGCGAGC
TTTAG

protein sequence of Ggra6131.t1

>Ggra6131.t1 ID=Ggra6131.t1|Name=Ggra6131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=685bp
MLYSDHVVFHVGAQKLKNAGPNTTYRPKGFFSSSNSTALLHMVNPYIRRA
KNSFRRLKFSTRFAVFPIALSILVAFFVSSNTISPSLTIEPHFKPSSNDS
TEYTNWEMKGTDFGMNGEKTLQDSKLVYAHDSRPNTSGPLHSALTPSTKP
NTVIDDKNHHPSLSLDKEPKITTPAENHASHQSKQKSRIHNRESHVMSAT
AKKPSNGKKSNDAISTPPRHPHEKTSQSNIGHKHRRFHFDETSFSELPDG
KPLIDKEFTAFKPTRSRTTDVRLISLQNVCYCTQRNKFLVPRLSRDRKTR
FPGYLYRYGAALSVSWKRKSQILASPDQKVVHIDGTTIIWRGRSIHSYTN
HLQPSLIPMRSLLDTLKKTKYTGNVRVAAESFTPSAGQEIVVRKAYDYFL
GDVPEENRIELARLRPRLLCFERVLALGSEFEGHAKSVESYEAVKGLIEK
HEGSALKGKLARTCKDVGTTKKTIWVLERQEQHTHAGTVSNSAEVREAIQ
HELVKAHIDDKVDIQFIQSPSLPCPKGTKRAGCFDSMCSRDEHIRNGAED
QHCHHHPSILPEALTFNKMTFLVTVTGRVNEGVIYMPRGAQVIEVLPHGI
LDHSFESLAKDARLKHYRLENRHFKNTELLMYDRFGDVARNLHSCWADLE
CREFRRTRATHIDVHHLKLLVRKALVDWKKTCEL*

mRNA from alignment at tig00000045_pilon:624398..626452-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6131.t1 ID=Ggra6131.t1|Name=Ggra6131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2055bp|location=Sequence derived from alignment at tig00000045_pilon:624398..626452- (Gracilaria gracilis GNS1m male)
ATGTTGTACAGCGACCACGTTGTTTTCCATGTTGGTGCTCAGAAGTTGAA
GAACGCGGGACCGAATACTACGTATCGTCCCAAGGGCTTCTTCTCCAGCT
CAAACTCGACAGCTCTTCTTCATATGGTTAATCCATACATCCGGCGGGCA
AAGAATAGCTTCCGCCGCTTAAAGTTTTCTACGAGATTTGCTGTGTTCCC
TATCGCTCTGTCTATTCTAGTTGCGTTCTTCGTGTCTTCGAATACCATCT
CACCTTCATTGACCATCGAACCTCATTTCAAACCTTCATCAAACGACTCC
ACCGAGTACACTAATTGGGAGATGAAGGGAACTGACTTTGGAATGAACGG
AGAGAAGACCTTGCAAGATTCGAAACTCGTATATGCCCATGATTCACGTC
CAAATACATCTGGGCCTCTACATTCTGCACTCACTCCGTCGACTAAACCG
AATACTGTTATTGACGATAAGAATCATCACCCTAGTCTTTCCCTTGATAA
GGAACCCAAAATCACTACACCGGCTGAAAACCATGCTTCTCATCAAAGCA
AGCAAAAATCCCGAATCCATAACAGGGAAAGCCACGTCATGTCAGCAACG
GCCAAGAAACCATCGAATGGGAAGAAGTCTAATGACGCTATTTCCACACC
ACCTCGACATCCCCACGAGAAAACCAGCCAATCGAACATCGGTCATAAAC
ACCGCCGTTTTCACTTTGACGAGACAAGCTTCTCGGAGCTTCCAGACGGT
AAACCGTTGATTGACAAAGAGTTTACCGCGTTCAAGCCTACAAGATCCCG
AACCACAGACGTTCGCCTGATTTCTCTGCAGAATGTGTGTTACTGTACGC
AACGAAACAAATTCCTCGTACCGAGATTGAGCAGGGACAGAAAGACTAGG
TTTCCAGGATATCTCTATCGCTATGGCGCAGCTTTGAGCGTGTCTTGGAA
GAGAAAGTCGCAAATATTGGCCAGTCCAGATCAGAAGGTCGTTCATATCG
ACGGGACAACTATCATTTGGCGTGGTCGATCAATCCATTCCTATACAAAT
CACCTGCAACCATCTCTTATTCCTATGCGCTCATTGCTTGATACTTTGAA
AAAGACGAAGTATACTGGTAATGTGAGGGTTGCGGCTGAGTCCTTCACCC
CATCAGCAGGGCAGGAAATTGTGGTTCGTAAAGCGTATGACTACTTTCTC
GGAGATGTTCCGGAAGAGAACAGGATTGAGCTTGCTCGTTTACGACCTCG
ACTACTATGCTTTGAGCGAGTTCTTGCTCTTGGATCTGAATTTGAAGGTC
ATGCTAAATCCGTTGAGTCCTATGAAGCCGTTAAAGGACTAATTGAAAAG
CATGAAGGTTCCGCTTTGAAGGGCAAACTCGCAAGAACCTGCAAAGATGT
GGGTACTACGAAGAAGACAATATGGGTTCTGGAACGTCAAGAGCAACATA
CTCATGCGGGCACTGTATCGAACTCCGCGGAAGTGAGGGAGGCGATACAG
CATGAGCTGGTAAAGGCGCATATAGACGACAAAGTTGACATACAGTTTAT
TCAATCACCTTCACTTCCATGTCCAAAGGGAACGAAACGAGCTGGATGTT
TCGACTCCATGTGCTCTCGCGACGAACATATCAGAAATGGCGCTGAAGAT
CAACATTGTCACCACCACCCCTCTATTCTACCTGAAGCTCTTACATTCAA
TAAGATGACGTTCTTGGTTACCGTCACTGGACGTGTAAACGAAGGAGTGA
TCTACATGCCTAGAGGTGCACAGGTAATCGAGGTACTTCCGCATGGAATC
CTTGATCATTCCTTTGAAAGTCTTGCTAAAGATGCGCGATTGAAACACTA
CAGACTGGAGAACCGACACTTCAAGAATACCGAATTGCTTATGTACGACC
GATTCGGGGATGTGGCTCGAAACTTACACTCGTGTTGGGCGGATCTAGAG
TGCAGGGAGTTTAGGCGGACTCGCGCCACTCACATAGACGTGCATCACCT
TAAGCTTCTTGTTCGAAAGGCACTCGTAGATTGGAAGAAGACTTGCGAGC
TTTAG

Coding sequence (CDS) from alignment at tig00000045_pilon:624398..626452-

>Ggra6131.t1 ID=Ggra6131.t1|Name=Ggra6131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2055bp|location=Sequence derived from alignment at tig00000045_pilon:624398..626452- (Gracilaria gracilis GNS1m male)
ATGTTGTACAGCGACCACGTTGTTTTCCATGTTGGTGCTCAGAAGTTGAA
GAACGCGGGACCGAATACTACGTATCGTCCCAAGGGCTTCTTCTCCAGCT
CAAACTCGACAGCTCTTCTTCATATGGTTAATCCATACATCCGGCGGGCA
AAGAATAGCTTCCGCCGCTTAAAGTTTTCTACGAGATTTGCTGTGTTCCC
TATCGCTCTGTCTATTCTAGTTGCGTTCTTCGTGTCTTCGAATACCATCT
CACCTTCATTGACCATCGAACCTCATTTCAAACCTTCATCAAACGACTCC
ACCGAGTACACTAATTGGGAGATGAAGGGAACTGACTTTGGAATGAACGG
AGAGAAGACCTTGCAAGATTCGAAACTCGTATATGCCCATGATTCACGTC
CAAATACATCTGGGCCTCTACATTCTGCACTCACTCCGTCGACTAAACCG
AATACTGTTATTGACGATAAGAATCATCACCCTAGTCTTTCCCTTGATAA
GGAACCCAAAATCACTACACCGGCTGAAAACCATGCTTCTCATCAAAGCA
AGCAAAAATCCCGAATCCATAACAGGGAAAGCCACGTCATGTCAGCAACG
GCCAAGAAACCATCGAATGGGAAGAAGTCTAATGACGCTATTTCCACACC
ACCTCGACATCCCCACGAGAAAACCAGCCAATCGAACATCGGTCATAAAC
ACCGCCGTTTTCACTTTGACGAGACAAGCTTCTCGGAGCTTCCAGACGGT
AAACCGTTGATTGACAAAGAGTTTACCGCGTTCAAGCCTACAAGATCCCG
AACCACAGACGTTCGCCTGATTTCTCTGCAGAATGTGTGTTACTGTACGC
AACGAAACAAATTCCTCGTACCGAGATTGAGCAGGGACAGAAAGACTAGG
TTTCCAGGATATCTCTATCGCTATGGCGCAGCTTTGAGCGTGTCTTGGAA
GAGAAAGTCGCAAATATTGGCCAGTCCAGATCAGAAGGTCGTTCATATCG
ACGGGACAACTATCATTTGGCGTGGTCGATCAATCCATTCCTATACAAAT
CACCTGCAACCATCTCTTATTCCTATGCGCTCATTGCTTGATACTTTGAA
AAAGACGAAGTATACTGGTAATGTGAGGGTTGCGGCTGAGTCCTTCACCC
CATCAGCAGGGCAGGAAATTGTGGTTCGTAAAGCGTATGACTACTTTCTC
GGAGATGTTCCGGAAGAGAACAGGATTGAGCTTGCTCGTTTACGACCTCG
ACTACTATGCTTTGAGCGAGTTCTTGCTCTTGGATCTGAATTTGAAGGTC
ATGCTAAATCCGTTGAGTCCTATGAAGCCGTTAAAGGACTAATTGAAAAG
CATGAAGGTTCCGCTTTGAAGGGCAAACTCGCAAGAACCTGCAAAGATGT
GGGTACTACGAAGAAGACAATATGGGTTCTGGAACGTCAAGAGCAACATA
CTCATGCGGGCACTGTATCGAACTCCGCGGAAGTGAGGGAGGCGATACAG
CATGAGCTGGTAAAGGCGCATATAGACGACAAAGTTGACATACAGTTTAT
TCAATCACCTTCACTTCCATGTCCAAAGGGAACGAAACGAGCTGGATGTT
TCGACTCCATGTGCTCTCGCGACGAACATATCAGAAATGGCGCTGAAGAT
CAACATTGTCACCACCACCCCTCTATTCTACCTGAAGCTCTTACATTCAA
TAAGATGACGTTCTTGGTTACCGTCACTGGACGTGTAAACGAAGGAGTGA
TCTACATGCCTAGAGGTGCACAGGTAATCGAGGTACTTCCGCATGGAATC
CTTGATCATTCCTTTGAAAGTCTTGCTAAAGATGCGCGATTGAAACACTA
CAGACTGGAGAACCGACACTTCAAGAATACCGAATTGCTTATGTACGACC
GATTCGGGGATGTGGCTCGAAACTTACACTCGTGTTGGGCGGATCTAGAG
TGCAGGGAGTTTAGGCGGACTCGCGCCACTCACATAGACGTGCATCACCT
TAAGCTTCTTGTTCGAAAGGCACTCGTAGATTGGAAGAAGACTTGCGAGC
TTTAG