Ggra6129.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6129.t1
Unique Name	Ggra6129.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	308

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:622064..622987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX51022
PFAMs	Cons_hypoth95
Max annot lvl	2759\|Eukaryota
Evalue	1.63e-74
EggNOG OGs	COG0742@1\|root,2QSWU@2759\|Eukaryota
Description	Conserved hypothetical protein 95
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6129	Ggra6129	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 622064..622987 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6129.t1.start1	Ggra6129.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 622064..622066 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6129.t1.CDS1	Ggra6129.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 622064..622987 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6129.t1.exon1	Ggra6129.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 622064..622987 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6129.t1.stop1	Ggra6129.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 622985..622987 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6129.t1	Ggra6129.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 622064..622987 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:622064..622987+
coding sequence from alignment at tig00000045_pilon:622064..622987+

mRNA sequence

>Ggra6129.t1 ID=Ggra6129.t1|Name=Ggra6129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=308bp
MAFVNSFLGSDFKSRNNKVGSLQTCPSTPTKTLRMKISAKRRVPPEGLRE
EATSSVDDEPSSGKVYAPRQQRGGGRRFRGFVRSQGKKLVSERLPPNPPG
LRIASGSVKGRRIRSPNVYLRPMMAKVREAVFSMLDTLDALPKNGICLDL
FAGCGSVGIEALSRGMNRAIFVDYSRACVDSINDNLATCNFDDRSLAVCS
RVEEFLRDGTKYNYGKHYDLITITPPYEEVDYSQLMKSVAESDCVGEQTF
VVVEYPVELRTFPPSLGNRLVGIRNRRYGRTVIAIYACQPDVDIELRPDE
FISVGRR*

spliced messenger RNA

>Ggra6129.t1 ID=Ggra6129.t1|Name=Ggra6129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000045_pilon:622064..622987+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTGAATTCATTTCTGGGATCAGACTTCAAGTCAAGAAATAA
CAAAGTTGGCAGTCTGCAGACTTGTCCTTCGACCCCAACCAAAACTCTTC
GGATGAAGATATCCGCAAAACGAAGGGTTCCTCCTGAAGGGTTGCGAGAA
GAAGCCACAAGTTCTGTTGATGACGAACCATCATCTGGAAAAGTGTACGC
CCCGCGACAGCAGAGAGGCGGGGGAAGGCGCTTTCGCGGTTTTGTACGAT
CCCAGGGAAAGAAGCTTGTTTCGGAAAGGCTCCCACCAAATCCTCCAGGT
TTGCGTATCGCTTCAGGATCGGTTAAAGGACGGCGAATTCGATCTCCGAA
TGTGTACCTTCGGCCTATGATGGCCAAAGTCCGGGAGGCAGTCTTTTCCA
TGCTAGACACACTCGATGCTCTCCCAAAGAATGGAATATGCTTGGACTTG
TTTGCAGGCTGCGGTAGCGTTGGGATTGAGGCTTTGTCACGGGGAATGAA
CAGAGCAATCTTTGTGGACTACTCGCGGGCGTGCGTCGATTCTATCAACG
ACAATTTAGCGACCTGCAACTTTGATGATAGAAGTCTGGCGGTATGTTCC
CGGGTGGAGGAGTTTTTGCGAGATGGGACTAAGTATAACTATGGAAAGCA
TTATGATTTGATTACGATTACTCCGCCCTACGAAGAGGTAGACTATTCAC
AGTTGATGAAGTCTGTTGCTGAATCTGATTGTGTAGGAGAACAAACATTC
GTTGTCGTGGAGTACCCGGTAGAGCTTCGCACGTTTCCACCCAGCCTTGG
TAACCGACTGGTAGGCATCCGTAATCGCCGATATGGCCGAACGGTTATTG
CAATTTATGCGTGTCAACCAGATGTGGATATCGAATTGCGACCAGATGAG
TTCATCAGTGTCGGACGACGGTAA

protein sequence of Ggra6129.t1

>Ggra6129.t1 ID=Ggra6129.t1|Name=Ggra6129.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=308bp
MAFVNSFLGSDFKSRNNKVGSLQTCPSTPTKTLRMKISAKRRVPPEGLRE
EATSSVDDEPSSGKVYAPRQQRGGGRRFRGFVRSQGKKLVSERLPPNPPG
LRIASGSVKGRRIRSPNVYLRPMMAKVREAVFSMLDTLDALPKNGICLDL
FAGCGSVGIEALSRGMNRAIFVDYSRACVDSINDNLATCNFDDRSLAVCS
RVEEFLRDGTKYNYGKHYDLITITPPYEEVDYSQLMKSVAESDCVGEQTF
VVVEYPVELRTFPPSLGNRLVGIRNRRYGRTVIAIYACQPDVDIELRPDE
FISVGRR*

mRNA from alignment at tig00000045_pilon:622064..622987+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6129.t1 ID=Ggra6129.t1|Name=Ggra6129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000045_pilon:622064..622987+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTGAATTCATTTCTGGGATCAGACTTCAAGTCAAGAAATAA
CAAAGTTGGCAGTCTGCAGACTTGTCCTTCGACCCCAACCAAAACTCTTC
GGATGAAGATATCCGCAAAACGAAGGGTTCCTCCTGAAGGGTTGCGAGAA
GAAGCCACAAGTTCTGTTGATGACGAACCATCATCTGGAAAAGTGTACGC
CCCGCGACAGCAGAGAGGCGGGGGAAGGCGCTTTCGCGGTTTTGTACGAT
CCCAGGGAAAGAAGCTTGTTTCGGAAAGGCTCCCACCAAATCCTCCAGGT
TTGCGTATCGCTTCAGGATCGGTTAAAGGACGGCGAATTCGATCTCCGAA
TGTGTACCTTCGGCCTATGATGGCCAAAGTCCGGGAGGCAGTCTTTTCCA
TGCTAGACACACTCGATGCTCTCCCAAAGAATGGAATATGCTTGGACTTG
TTTGCAGGCTGCGGTAGCGTTGGGATTGAGGCTTTGTCACGGGGAATGAA
CAGAGCAATCTTTGTGGACTACTCGCGGGCGTGCGTCGATTCTATCAACG
ACAATTTAGCGACCTGCAACTTTGATGATAGAAGTCTGGCGGTATGTTCC
CGGGTGGAGGAGTTTTTGCGAGATGGGACTAAGTATAACTATGGAAAGCA
TTATGATTTGATTACGATTACTCCGCCCTACGAAGAGGTAGACTATTCAC
AGTTGATGAAGTCTGTTGCTGAATCTGATTGTGTAGGAGAACAAACATTC
GTTGTCGTGGAGTACCCGGTAGAGCTTCGCACGTTTCCACCCAGCCTTGG
TAACCGACTGGTAGGCATCCGTAATCGCCGATATGGCCGAACGGTTATTG
CAATTTATGCGTGTCAACCAGATGTGGATATCGAATTGCGACCAGATGAG
TTCATCAGTGTCGGACGACGGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:622064..622987+

>Ggra6129.t1 ID=Ggra6129.t1|Name=Ggra6129.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00000045_pilon:622064..622987+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTGAATTCATTTCTGGGATCAGACTTCAAGTCAAGAAATAA
CAAAGTTGGCAGTCTGCAGACTTGTCCTTCGACCCCAACCAAAACTCTTC
GGATGAAGATATCCGCAAAACGAAGGGTTCCTCCTGAAGGGTTGCGAGAA
GAAGCCACAAGTTCTGTTGATGACGAACCATCATCTGGAAAAGTGTACGC
CCCGCGACAGCAGAGAGGCGGGGGAAGGCGCTTTCGCGGTTTTGTACGAT
CCCAGGGAAAGAAGCTTGTTTCGGAAAGGCTCCCACCAAATCCTCCAGGT
TTGCGTATCGCTTCAGGATCGGTTAAAGGACGGCGAATTCGATCTCCGAA
TGTGTACCTTCGGCCTATGATGGCCAAAGTCCGGGAGGCAGTCTTTTCCA
TGCTAGACACACTCGATGCTCTCCCAAAGAATGGAATATGCTTGGACTTG
TTTGCAGGCTGCGGTAGCGTTGGGATTGAGGCTTTGTCACGGGGAATGAA
CAGAGCAATCTTTGTGGACTACTCGCGGGCGTGCGTCGATTCTATCAACG
ACAATTTAGCGACCTGCAACTTTGATGATAGAAGTCTGGCGGTATGTTCC
CGGGTGGAGGAGTTTTTGCGAGATGGGACTAAGTATAACTATGGAAAGCA
TTATGATTTGATTACGATTACTCCGCCCTACGAAGAGGTAGACTATTCAC
AGTTGATGAAGTCTGTTGCTGAATCTGATTGTGTAGGAGAACAAACATTC
GTTGTCGTGGAGTACCCGGTAGAGCTTCGCACGTTTCCACCCAGCCTTGG
TAACCGACTGGTAGGCATCCGTAATCGCCGATATGGCCGAACGGTTATTG
CAATTTATGCGTGTCAACCAGATGTGGATATCGAATTGCGACCAGATGAG
TTCATCAGTGTCGGACGACGGTAA