Ggra6024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6024.t1
Unique NameGgra6024.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:160202..161662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG178CT
Preferred nameFDFT1
PFAMsSQS_PSY
Max annot lvl2759|Eukaryota
KEGG rclassRC00362,RC00796,RC02839
KEGG koko:K00801
KEGG ReactionR00702,R02872,R06223
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
GOsGO:0003674,GO:0003824,GO:0004310,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0019867,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0051996,GO:0062012,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090181,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue1.44e-128
EggNOG OGsCOG1562@1|root,KOG1459@2759|Eukaryota
EC2.5.1.21
Descriptionfarnesyl-diphosphate farnesyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6024Ggra6024Gracilaria gracilis GNS1m malegenetig00000045_pilon 160202..161662 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6024.t1.start1Ggra6024.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 160202..160204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6024.t1.CDS1Ggra6024.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 160202..161662 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6024.t1.exon1Ggra6024.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 160202..161662 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6024.t1.stop1Ggra6024.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 161660..161662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6024.t1Ggra6024.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 160202..161662 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6024.t1 ID=Ggra6024.t1|Name=Ggra6024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MGVLKEAMAAGSLTELIALFRYKRKAAAASALMTAALDEDWSFAYTALSA
VSRSFALVIMELDSELRHAICVFYLVLRALDTIEDDTSVNPAVRHQLCTN
FWNNLESFVTDESYQPWSSSEFGSGFEKTLCEKFPCVLRCYKSLHTKYQV
TIRDITRRMGYGMAEHIEDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQS
GYENASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG
NELSDFRDRANRKFALAALNHMVTDALSHVPDCLEYMSRVRTDTVFKFVA
IPQVMAIATLAELYNNGKIFEGVVKIRRSKTADLVLRTNNMDVVYKVFFE
CAQAIIQKIEPHDPNADRTRQRLNCVLDICVPHVPATPDLIIPNVLSIIL
FCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIASLFLVCIYMFG
FFLLPYMQKLQREEVRRMQESNRHARLRERVVILED*
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spliced messenger RNA

>Ggra6024.t1 ID=Ggra6024.t1|Name=Ggra6024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000045_pilon:160202..161662+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTTCTCAAAGAAGCCATGGCGGCGGGCTCTCTCACCGAGTTGAT
CGCGCTCTTTCGCTACAAGCGCAAAGCCGCAGCAGCCAGTGCTCTGATGA
CTGCCGCTCTCGATGAAGATTGGAGCTTTGCCTACACAGCCCTCAGCGCG
GTATCTCGCTCCTTTGCGCTCGTTATAATGGAACTCGATTCCGAGCTTCG
TCATGCAATATGCGTCTTTTATCTCGTGCTGCGCGCCCTTGACACCATCG
AGGATGATACTTCTGTGAACCCCGCCGTACGCCACCAACTTTGTACCAAC
TTTTGGAACAACCTTGAGTCGTTCGTCACCGATGAGTCTTACCAACCATG
GTCATCATCCGAGTTTGGTTCAGGATTTGAGAAGACTCTCTGCGAAAAAT
TTCCGTGCGTTCTACGTTGCTACAAATCGCTTCACACAAAATACCAAGTA
ACAATAAGAGACATTACCCGTCGAATGGGGTATGGTATGGCAGAGCATAT
CGAAGACGTGTCGTGCGAAACCGTCAAAGATTACGATCTGTATTGTCACT
ATGTTGCGGGACTAGTTGGATACGGCCTTTCCGACATATTTGCGCAATCT
GGCTACGAAAATGCATCGTTCTCCGAACGAACGGATTTGAGCAATTCCAT
GGGATTATTCTTACAAAAGACCAATATCATTCGTGATTACCTCGAGGACA
TCAACGAAGGCCGAACGTTCTGGCCGAAGGAGATATGGAGCAATTACGGA
AACGAGCTCTCCGACTTCAGAGATCGAGCTAATCGCAAGTTTGCGCTCGC
TGCGTTGAACCACATGGTGACGGATGCTTTAAGTCACGTTCCTGATTGTT
TAGAATACATGAGTCGAGTTCGAACTGACACTGTCTTCAAATTCGTAGCG
ATTCCACAAGTCATGGCAATAGCCACCCTAGCCGAGTTGTACAACAATGG
GAAAATCTTCGAAGGTGTGGTTAAGATACGCCGTTCAAAAACCGCAGACT
TGGTCCTACGCACTAACAACATGGACGTTGTATACAAGGTGTTCTTTGAA
TGTGCCCAGGCTATCATCCAGAAAATAGAACCTCACGATCCGAACGCTGA
TAGAACTCGTCAGCGTCTGAACTGCGTCCTGGACATATGCGTTCCCCACG
TCCCAGCAACGCCAGATCTAATAATTCCCAACGTGCTGAGCATAATTCTC
TTCTGTGGGTTGAGCAGTTATGTCTTGAAGAGACGCCAAGAGCACTTTGA
TGGCGCAGTATTCACTTGGCGCTCGGCTGGAGGTATCATGGAACCTCGCG
ACATGCTTGCCATTGCTTCCTTATTTTTGGTTTGTATATATATGTTTGGG
TTCTTCTTGCTTCCGTACATGCAAAAACTGCAGCGGGAGGAGGTTAGGCG
AATGCAAGAGTCTAATCGCCATGCCCGTCTTAGAGAGCGAGTTGTGATAT
TGGAGGACTGA
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protein sequence of Ggra6024.t1

>Ggra6024.t1 ID=Ggra6024.t1|Name=Ggra6024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MGVLKEAMAAGSLTELIALFRYKRKAAAASALMTAALDEDWSFAYTALSA
VSRSFALVIMELDSELRHAICVFYLVLRALDTIEDDTSVNPAVRHQLCTN
FWNNLESFVTDESYQPWSSSEFGSGFEKTLCEKFPCVLRCYKSLHTKYQV
TIRDITRRMGYGMAEHIEDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQS
GYENASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG
NELSDFRDRANRKFALAALNHMVTDALSHVPDCLEYMSRVRTDTVFKFVA
IPQVMAIATLAELYNNGKIFEGVVKIRRSKTADLVLRTNNMDVVYKVFFE
CAQAIIQKIEPHDPNADRTRQRLNCVLDICVPHVPATPDLIIPNVLSIIL
FCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIASLFLVCIYMFG
FFLLPYMQKLQREEVRRMQESNRHARLRERVVILED*
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mRNA from alignment at tig00000045_pilon:160202..161662+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6024.t1 ID=Ggra6024.t1|Name=Ggra6024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000045_pilon:160202..161662+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTCTCAAAGAAGCCATGGCGGCGGGCTCTCTCACCGAGTTGAT
CGCGCTCTTTCGCTACAAGCGCAAAGCCGCAGCAGCCAGTGCTCTGATGA
CTGCCGCTCTCGATGAAGATTGGAGCTTTGCCTACACAGCCCTCAGCGCG
GTATCTCGCTCCTTTGCGCTCGTTATAATGGAACTCGATTCCGAGCTTCG
TCATGCAATATGCGTCTTTTATCTCGTGCTGCGCGCCCTTGACACCATCG
AGGATGATACTTCTGTGAACCCCGCCGTACGCCACCAACTTTGTACCAAC
TTTTGGAACAACCTTGAGTCGTTCGTCACCGATGAGTCTTACCAACCATG
GTCATCATCCGAGTTTGGTTCAGGATTTGAGAAGACTCTCTGCGAAAAAT
TTCCGTGCGTTCTACGTTGCTACAAATCGCTTCACACAAAATACCAAGTA
ACAATAAGAGACATTACCCGTCGAATGGGGTATGGTATGGCAGAGCATAT
CGAAGACGTGTCGTGCGAAACCGTCAAAGATTACGATCTGTATTGTCACT
ATGTTGCGGGACTAGTTGGATACGGCCTTTCCGACATATTTGCGCAATCT
GGCTACGAAAATGCATCGTTCTCCGAACGAACGGATTTGAGCAATTCCAT
GGGATTATTCTTACAAAAGACCAATATCATTCGTGATTACCTCGAGGACA
TCAACGAAGGCCGAACGTTCTGGCCGAAGGAGATATGGAGCAATTACGGA
AACGAGCTCTCCGACTTCAGAGATCGAGCTAATCGCAAGTTTGCGCTCGC
TGCGTTGAACCACATGGTGACGGATGCTTTAAGTCACGTTCCTGATTGTT
TAGAATACATGAGTCGAGTTCGAACTGACACTGTCTTCAAATTCGTAGCG
ATTCCACAAGTCATGGCAATAGCCACCCTAGCCGAGTTGTACAACAATGG
GAAAATCTTCGAAGGTGTGGTTAAGATACGCCGTTCAAAAACCGCAGACT
TGGTCCTACGCACTAACAACATGGACGTTGTATACAAGGTGTTCTTTGAA
TGTGCCCAGGCTATCATCCAGAAAATAGAACCTCACGATCCGAACGCTGA
TAGAACTCGTCAGCGTCTGAACTGCGTCCTGGACATATGCGTTCCCCACG
TCCCAGCAACGCCAGATCTAATAATTCCCAACGTGCTGAGCATAATTCTC
TTCTGTGGGTTGAGCAGTTATGTCTTGAAGAGACGCCAAGAGCACTTTGA
TGGCGCAGTATTCACTTGGCGCTCGGCTGGAGGTATCATGGAACCTCGCG
ACATGCTTGCCATTGCTTCCTTATTTTTGGTTTGTATATATATGTTTGGG
TTCTTCTTGCTTCCGTACATGCAAAAACTGCAGCGGGAGGAGGTTAGGCG
AATGCAAGAGTCTAATCGCCATGCCCGTCTTAGAGAGCGAGTTGTGATAT
TGGAGGACTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:160202..161662+

>Ggra6024.t1 ID=Ggra6024.t1|Name=Ggra6024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000045_pilon:160202..161662+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTCTCAAAGAAGCCATGGCGGCGGGCTCTCTCACCGAGTTGAT
CGCGCTCTTTCGCTACAAGCGCAAAGCCGCAGCAGCCAGTGCTCTGATGA
CTGCCGCTCTCGATGAAGATTGGAGCTTTGCCTACACAGCCCTCAGCGCG
GTATCTCGCTCCTTTGCGCTCGTTATAATGGAACTCGATTCCGAGCTTCG
TCATGCAATATGCGTCTTTTATCTCGTGCTGCGCGCCCTTGACACCATCG
AGGATGATACTTCTGTGAACCCCGCCGTACGCCACCAACTTTGTACCAAC
TTTTGGAACAACCTTGAGTCGTTCGTCACCGATGAGTCTTACCAACCATG
GTCATCATCCGAGTTTGGTTCAGGATTTGAGAAGACTCTCTGCGAAAAAT
TTCCGTGCGTTCTACGTTGCTACAAATCGCTTCACACAAAATACCAAGTA
ACAATAAGAGACATTACCCGTCGAATGGGGTATGGTATGGCAGAGCATAT
CGAAGACGTGTCGTGCGAAACCGTCAAAGATTACGATCTGTATTGTCACT
ATGTTGCGGGACTAGTTGGATACGGCCTTTCCGACATATTTGCGCAATCT
GGCTACGAAAATGCATCGTTCTCCGAACGAACGGATTTGAGCAATTCCAT
GGGATTATTCTTACAAAAGACCAATATCATTCGTGATTACCTCGAGGACA
TCAACGAAGGCCGAACGTTCTGGCCGAAGGAGATATGGAGCAATTACGGA
AACGAGCTCTCCGACTTCAGAGATCGAGCTAATCGCAAGTTTGCGCTCGC
TGCGTTGAACCACATGGTGACGGATGCTTTAAGTCACGTTCCTGATTGTT
TAGAATACATGAGTCGAGTTCGAACTGACACTGTCTTCAAATTCGTAGCG
ATTCCACAAGTCATGGCAATAGCCACCCTAGCCGAGTTGTACAACAATGG
GAAAATCTTCGAAGGTGTGGTTAAGATACGCCGTTCAAAAACCGCAGACT
TGGTCCTACGCACTAACAACATGGACGTTGTATACAAGGTGTTCTTTGAA
TGTGCCCAGGCTATCATCCAGAAAATAGAACCTCACGATCCGAACGCTGA
TAGAACTCGTCAGCGTCTGAACTGCGTCCTGGACATATGCGTTCCCCACG
TCCCAGCAACGCCAGATCTAATAATTCCCAACGTGCTGAGCATAATTCTC
TTCTGTGGGTTGAGCAGTTATGTCTTGAAGAGACGCCAAGAGCACTTTGA
TGGCGCAGTATTCACTTGGCGCTCGGCTGGAGGTATCATGGAACCTCGCG
ACATGCTTGCCATTGCTTCCTTATTTTTGGTTTGTATATATATGTTTGGG
TTCTTCTTGCTTCCGTACATGCAAAAACTGCAGCGGGAGGAGGTTAGGCG
AATGCAAGAGTCTAATCGCCATGCCCGTCTTAGAGAGCGAGTTGTGATAT
TGGAGGACTGA
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