Ggra600.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra600.t1
Unique NameGgra600.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:68811..69947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272952.HpaP801772
Max annot lvl272952.HpaP801772|-
Evalue4.08e-33
EggNOG OGs2EZPR@1|root,2T0ZD@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra600Ggra600Gracilaria gracilis GNS1m malegenetig00000203_pilon 68811..69947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1Ggra600.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 68811..69947 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1.stop1Ggra600.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 68811..68813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1.CDS1Ggra600.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 68811..69316 -
Ggra600.t1.CDS2Ggra600.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000203_pilon 69398..69947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1.exon1Ggra600.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 68811..69316 -
Ggra600.t1.exon2Ggra600.t1.exon2Gracilaria gracilis GNS1m maleexontig00000203_pilon 69398..69947 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1.intron1Ggra600.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000203_pilon 69317..69397 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra600.t1.start1Ggra600.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 69945..69947 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra600.t1 ID=Ggra600.t1|Name=Ggra600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MFERLLQVKSVITFIPYVLLHERHSLGVDSDYQLPGELVQINSDSQYWNG
VQKARALFAQICSCIGVLEGDSAPMSLAYACFLYIRVLLWTQKGFQEDTV
AFENRSLYQWSRISSPVHALAFFCDSLFKSMRHSLTETYGDGFIGLGNGP
LATQCHEALAMMAEEGFYLEILTEEFMRHCVSPKTLKRIYKGPASTSGIE
RSHKVEKRIHTSRRARTGEKKIKKQVAVAHNAAPLRKTLISKRTNCFDLK
IASLSFATSPETSPDTLQTSASNENTNGLVTSSPPEESQDTAASTSELNQ
ISTSGADGIATVVESFNHEEPEEELHLEAGLDSIETADDNPDHAIYNLED
W*
back to top

spliced messenger RNA

>Ggra600.t1 ID=Ggra600.t1|Name=Ggra600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000203_pilon:68811..69947- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGAGACTCCTACAGGTGAAATCAGTTATCACTTTTATTCCGTA
CGTTTTACTCCACGAGAGGCATTCTCTTGGGGTAGATTCAGATTATCAAC
TGCCAGGAGAGTTAGTTCAGATTAATTCTGACTCGCAGTATTGGAATGGT
GTCCAAAAAGCACGCGCTCTATTCGCTCAAATATGCAGCTGTATTGGAGT
TCTTGAGGGTGACTCTGCACCCATGTCACTTGCTTATGCTTGCTTCCTAT
ACATCCGTGTTCTCTTATGGACACAAAAAGGCTTTCAAGAGGATACAGTT
GCTTTCGAAAACCGTTCATTGTACCAGTGGAGCCGAATTAGTTCTCCTGT
TCACGCTCTAGCCTTCTTCTGTGATTCTCTTTTCAAATCTATGAGACACT
CTCTGACAGAAACATACGGGGATGGTTTTATTGGATTGGGAAATGGCCCA
CTAGCTACGCAATGTCATGAGGCATTGGCAATGATGGCCGAAGAGGGTTT
TTACCTCGAAATACTCACTGAAGAATTCATGCGTCACTGCGTCTCGCCTA
AAACTCTGAAACGCATCTACAAAGGCCCAGCATCTACTTCCGGTATTGAA
CGGTCTCATAAAGTAGAGAAGCGCATTCACACGTCACGGCGCGCTCGTAC
CGGAGAGAAGAAGATCAAAAAGCAAGTGGCGGTTGCGCACAATGCTGCGC
CTTTGAGAAAGACATTAATCTCAAAGCGCACGAATTGCTTCGACCTTAAG
ATTGCAAGTCTTTCCTTCGCTACATCCCCTGAAACGAGCCCGGACACTCT
CCAAACGAGCGCCTCCAATGAAAACACAAACGGTTTGGTGACTTCGAGCC
CCCCAGAAGAGTCTCAAGATACTGCTGCGAGTACCTCTGAACTGAACCAA
ATCTCCACTTCTGGTGCCGATGGTATTGCTACTGTGGTTGAAAGTTTCAA
CCACGAAGAACCTGAGGAAGAGTTGCACTTGGAGGCGGGTTTAGATTCGA
TTGAAACCGCCGACGACAACCCAGATCATGCAATCTACAACCTCGAAGAT
TGGTGA
back to top

protein sequence of Ggra600.t1

>Ggra600.t1 ID=Ggra600.t1|Name=Ggra600.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MFERLLQVKSVITFIPYVLLHERHSLGVDSDYQLPGELVQINSDSQYWNG
VQKARALFAQICSCIGVLEGDSAPMSLAYACFLYIRVLLWTQKGFQEDTV
AFENRSLYQWSRISSPVHALAFFCDSLFKSMRHSLTETYGDGFIGLGNGP
LATQCHEALAMMAEEGFYLEILTEEFMRHCVSPKTLKRIYKGPASTSGIE
RSHKVEKRIHTSRRARTGEKKIKKQVAVAHNAAPLRKTLISKRTNCFDLK
IASLSFATSPETSPDTLQTSASNENTNGLVTSSPPEESQDTAASTSELNQ
ISTSGADGIATVVESFNHEEPEEELHLEAGLDSIETADDNPDHAIYNLED
W*
back to top

mRNA from alignment at tig00000203_pilon:68811..69947-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra600.t1 ID=Ggra600.t1|Name=Ggra600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000203_pilon:68811..69947- (Gracilaria gracilis GNS1m male)
ATGTTCGAGAGACTCCTACAGGTGAAATCAGTTATCACTTTTATTCCGTA
CGTTTTACTCCACGAGAGGCATTCTCTTGGGGTAGATTCAGATTATCAAC
TGCCAGGAGAGTTAGTTCAGATTAATTCTGACTCGCAGTATTGGAATGGT
GTCCAAAAAGCACGCGCTCTATTCGCTCAAATATGCAGCTGTATTGGAGT
TCTTGAGGGTGACTCTGCACCCATGTCACTTGCTTATGCTTGCTTCCTAT
ACATCCGTGTTCTCTTATGGACACAAAAAGGCTTTCAAGAGGATACAGTT
GCTTTCGAAAACCGTTCATTGTACCAGTGGAGCCGAATTAGTTCTCCTGT
TCACGCTCTAGCCTTCTTCTGTGATTCTCTTTTCAAATCTATGAGACACT
CTCTGACAGAAACATACGGGGATGGTTTTATTGGATTGGGAAATGGCCCA
CTAGCTACGCAATGTCATGAGGCATTGGCAATGATGGCCGAAGAGGGTTT
TTACCTCGAAATACTCACTGAAGAATTCATGCGTCACTGCGTCTCGCCTA
GTCCGTTGATCGCAAAATTGCAAGAATGGCACCCTTTGCTAATATGGTAA
CAGTTGGGGGGTACATTTTTTCTTCTTTCAGAAACTCTGAAACGCATCTA
CAAAGGCCCAGCATCTACTTCCGGTATTGAACGGTCTCATAAAGTAGAGA
AGCGCATTCACACGTCACGGCGCGCTCGTACCGGAGAGAAGAAGATCAAA
AAGCAAGTGGCGGTTGCGCACAATGCTGCGCCTTTGAGAAAGACATTAAT
CTCAAAGCGCACGAATTGCTTCGACCTTAAGATTGCAAGTCTTTCCTTCG
CTACATCCCCTGAAACGAGCCCGGACACTCTCCAAACGAGCGCCTCCAAT
GAAAACACAAACGGTTTGGTGACTTCGAGCCCCCCAGAAGAGTCTCAAGA
TACTGCTGCGAGTACCTCTGAACTGAACCAAATCTCCACTTCTGGTGCCG
ATGGTATTGCTACTGTGGTTGAAAGTTTCAACCACGAAGAACCTGAGGAA
GAGTTGCACTTGGAGGCGGGTTTAGATTCGATTGAAACCGCCGACGACAA
CCCAGATCATGCAATCTACAACCTCGAAGATTGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000203_pilon:68811..69947-

>Ggra600.t1 ID=Ggra600.t1|Name=Ggra600.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000203_pilon:68811..69947- (Gracilaria gracilis GNS1m male)
ATGTTCGAGAGACTCCTACAGGTGAAATCAGTTATCACTTTTATTCCGTA
CGTTTTACTCCACGAGAGGCATTCTCTTGGGGTAGATTCAGATTATCAAC
TGCCAGGAGAGTTAGTTCAGATTAATTCTGACTCGCAGTATTGGAATGGT
GTCCAAAAAGCACGCGCTCTATTCGCTCAAATATGCAGCTGTATTGGAGT
TCTTGAGGGTGACTCTGCACCCATGTCACTTGCTTATGCTTGCTTCCTAT
ACATCCGTGTTCTCTTATGGACACAAAAAGGCTTTCAAGAGGATACAGTT
GCTTTCGAAAACCGTTCATTGTACCAGTGGAGCCGAATTAGTTCTCCTGT
TCACGCTCTAGCCTTCTTCTGTGATTCTCTTTTCAAATCTATGAGACACT
CTCTGACAGAAACATACGGGGATGGTTTTATTGGATTGGGAAATGGCCCA
CTAGCTACGCAATGTCATGAGGCATTGGCAATGATGGCCGAAGAGGGTTT
TTACCTCGAAATACTCACTGAAGAATTCATGCGTCACTGCGTCTCGCCTA
AAACTCTGAAACGCATCTACAAAGGCCCAGCATCTACTTCCGGTATTGAA
CGGTCTCATAAAGTAGAGAAGCGCATTCACACGTCACGGCGCGCTCGTAC
CGGAGAGAAGAAGATCAAAAAGCAAGTGGCGGTTGCGCACAATGCTGCGC
CTTTGAGAAAGACATTAATCTCAAAGCGCACGAATTGCTTCGACCTTAAG
ATTGCAAGTCTTTCCTTCGCTACATCCCCTGAAACGAGCCCGGACACTCT
CCAAACGAGCGCCTCCAATGAAAACACAAACGGTTTGGTGACTTCGAGCC
CCCCAGAAGAGTCTCAAGATACTGCTGCGAGTACCTCTGAACTGAACCAA
ATCTCCACTTCTGGTGCCGATGGTATTGCTACTGTGGTTGAAAGTTTCAA
CCACGAAGAACCTGAGGAAGAGTTGCACTTGGAGGCGGGTTTAGATTCGA
TTGAAACCGCCGACGACAACCCAGATCATGCAATCTACAACCTCGAAGAT
TGGTGA
back to top