Ggra5932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5932.t1
Unique NameGgra5932.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:600987..601556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002502041.1
PFAMsICMT
Max annot lvl3041|Chlorophyta
KEGG rclassRC00003,RC00460
KEGG koko:K00587
KEGG ReactionR04496
KEGG Pathwayko00900,ko01130,map00900,map01130
Evalue4.16e-53
EggNOG OGsCOG2020@1|root,KOG2628@2759|Eukaryota,37P7F@33090|Viridiplantae,34I23@3041|Chlorophyta
EC2.1.1.100
DescriptionProtein-S-isoprenylcysteine O-methyltransferase
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5932Ggra5932Gracilaria gracilis GNS1m malegenetig00000068_pilon 600987..601556 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5932.t1.start1Ggra5932.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 600987..600989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5932.t1.CDS1Ggra5932.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 600987..601556 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5932.t1.exon1Ggra5932.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 600987..601556 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5932.t1.stop1Ggra5932.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 601554..601556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5932.t1Ggra5932.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 600987..601556 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5932.t1 ID=Ggra5932.t1|Name=Ggra5932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MDAIVIFSASLLFYHLSELFLVYTYTPEELSPSSALLSVPYLIAMALGIL
EYKITLSLFPDIKTYFLRVLQLPAIILLVIGESLRKAAWLTAKPSFTHLI
KETRRPSHKLVTHGVYAFCRHPGYLGWFLWAVATQLLLANFLCTPAFAII
AWKFFRERIPIEEFYLRRMFGSSYDQYRIKTPTFFPGVP*
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spliced messenger RNA

>Ggra5932.t1 ID=Ggra5932.t1|Name=Ggra5932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000068_pilon:600987..601556+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCGATTGTAATCTTCTCAGCTTCGTTGCTGTTCTATCATCTTTC
CGAGCTCTTTCTCGTCTACACCTACACTCCAGAGGAGCTATCGCCATCCT
CCGCGCTGCTTTCTGTTCCCTACCTCATTGCAATGGCGCTTGGCATTCTG
GAGTATAAGATTACGCTCAGCTTATTCCCAGACATCAAGACTTACTTTTT
ACGTGTGCTGCAACTGCCAGCTATCATCTTGCTCGTCATTGGTGAATCGC
TGCGCAAGGCTGCCTGGTTGACTGCAAAGCCTTCCTTCACTCACCTTATA
AAGGAAACACGTCGTCCATCTCACAAACTCGTTACCCATGGCGTCTATGC
CTTTTGTCGTCATCCGGGCTATCTTGGCTGGTTTCTATGGGCCGTCGCCA
CTCAGCTTTTGCTCGCGAATTTCCTGTGTACTCCGGCGTTTGCCATCATT
GCATGGAAATTTTTTCGCGAGCGTATTCCCATAGAAGAGTTTTATCTGCG
ACGAATGTTTGGCAGTAGTTATGACCAATACAGGATCAAGACACCCACGT
TTTTTCCGGGCGTGCCATGA
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protein sequence of Ggra5932.t1

>Ggra5932.t1 ID=Ggra5932.t1|Name=Ggra5932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MDAIVIFSASLLFYHLSELFLVYTYTPEELSPSSALLSVPYLIAMALGIL
EYKITLSLFPDIKTYFLRVLQLPAIILLVIGESLRKAAWLTAKPSFTHLI
KETRRPSHKLVTHGVYAFCRHPGYLGWFLWAVATQLLLANFLCTPAFAII
AWKFFRERIPIEEFYLRRMFGSSYDQYRIKTPTFFPGVP*
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mRNA from alignment at tig00000068_pilon:600987..601556+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5932.t1 ID=Ggra5932.t1|Name=Ggra5932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000068_pilon:600987..601556+ (Gracilaria gracilis GNS1m male)
ATGGATGCGATTGTAATCTTCTCAGCTTCGTTGCTGTTCTATCATCTTTC
CGAGCTCTTTCTCGTCTACACCTACACTCCAGAGGAGCTATCGCCATCCT
CCGCGCTGCTTTCTGTTCCCTACCTCATTGCAATGGCGCTTGGCATTCTG
GAGTATAAGATTACGCTCAGCTTATTCCCAGACATCAAGACTTACTTTTT
ACGTGTGCTGCAACTGCCAGCTATCATCTTGCTCGTCATTGGTGAATCGC
TGCGCAAGGCTGCCTGGTTGACTGCAAAGCCTTCCTTCACTCACCTTATA
AAGGAAACACGTCGTCCATCTCACAAACTCGTTACCCATGGCGTCTATGC
CTTTTGTCGTCATCCGGGCTATCTTGGCTGGTTTCTATGGGCCGTCGCCA
CTCAGCTTTTGCTCGCGAATTTCCTGTGTACTCCGGCGTTTGCCATCATT
GCATGGAAATTTTTTCGCGAGCGTATTCCCATAGAAGAGTTTTATCTGCG
ACGAATGTTTGGCAGTAGTTATGACCAATACAGGATCAAGACACCCACGT
TTTTTCCGGGCGTGCCATGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:600987..601556+

>Ggra5932.t1 ID=Ggra5932.t1|Name=Ggra5932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000068_pilon:600987..601556+ (Gracilaria gracilis GNS1m male)
ATGGATGCGATTGTAATCTTCTCAGCTTCGTTGCTGTTCTATCATCTTTC
CGAGCTCTTTCTCGTCTACACCTACACTCCAGAGGAGCTATCGCCATCCT
CCGCGCTGCTTTCTGTTCCCTACCTCATTGCAATGGCGCTTGGCATTCTG
GAGTATAAGATTACGCTCAGCTTATTCCCAGACATCAAGACTTACTTTTT
ACGTGTGCTGCAACTGCCAGCTATCATCTTGCTCGTCATTGGTGAATCGC
TGCGCAAGGCTGCCTGGTTGACTGCAAAGCCTTCCTTCACTCACCTTATA
AAGGAAACACGTCGTCCATCTCACAAACTCGTTACCCATGGCGTCTATGC
CTTTTGTCGTCATCCGGGCTATCTTGGCTGGTTTCTATGGGCCGTCGCCA
CTCAGCTTTTGCTCGCGAATTTCCTGTGTACTCCGGCGTTTGCCATCATT
GCATGGAAATTTTTTCGCGAGCGTATTCCCATAGAAGAGTTTTATCTGCG
ACGAATGTTTGGCAGTAGTTATGACCAATACAGGATCAAGACACCCACGT
TTTTTCCGGGCGTGCCATGA
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