Ggra5912.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5912.t1
Unique NameGgra5912.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:496171..496878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5912Ggra5912Gracilaria gracilis GNS1m malegenetig00000068_pilon 496171..496878 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5912.t1.start1Ggra5912.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 496171..496173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5912.t1.CDS1Ggra5912.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 496171..496878 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5912.t1.exon1Ggra5912.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 496171..496878 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5912.t1.stop1Ggra5912.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 496876..496878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5912.t1Ggra5912.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 496171..496878 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5912.t1 ID=Ggra5912.t1|Name=Ggra5912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MSALAPEPEQPAHIRLNAKQVEALLDCVGDTVFKPALVREIRRNVRVIHP
SDFPVKPVEPSQITRLAESTKRAQAMVAKLHAVRQAHTDLLRREIQRTHE
QATQLPSVPAQQLEPNVQLQSLAGQVNEHINGTVDFIYKLVAASEDTNKR
VQNVSKALEIANSDVNVADHSIIADWTGTFTDIGDQDIEIPIKPTEEVES
YPDSPFVTPRSKMRKRAAMMSRMSPGKRSISKLPR*
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spliced messenger RNA

>Ggra5912.t1 ID=Ggra5912.t1|Name=Ggra5912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000068_pilon:496171..496878+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGCTTGCGCCCGAACCGGAGCAGCCCGCTCACATCCGCCTCAA
CGCCAAGCAGGTGGAAGCACTGCTTGACTGCGTCGGCGACACCGTGTTCA
AACCCGCGCTCGTCAGGGAGATTCGCCGCAACGTGCGCGTCATTCATCCG
TCTGACTTTCCCGTCAAGCCGGTGGAACCATCACAGATTACTCGTCTTGC
GGAGTCAACCAAGCGAGCACAGGCTATGGTTGCGAAGCTTCACGCTGTCC
GACAGGCGCACACGGACTTGCTCCGCCGAGAGATTCAACGCACTCACGAG
CAAGCCACACAACTTCCGTCAGTTCCCGCGCAACAGCTTGAACCGAATGT
GCAGTTGCAATCGCTTGCCGGTCAGGTCAATGAGCATATCAACGGCACTG
TCGACTTTATTTACAAATTGGTGGCAGCGAGCGAAGATACCAATAAGAGA
GTTCAAAACGTCTCCAAGGCGTTGGAAATTGCCAACAGTGATGTCAATGT
TGCCGACCATAGCATTATAGCTGATTGGACCGGTACCTTCACTGATATTG
GCGACCAGGACATAGAGATCCCAATAAAGCCGACGGAGGAAGTTGAAAGC
TACCCGGATTCCCCTTTCGTCACACCCAGATCTAAGATGAGGAAAAGGGC
AGCCATGATGTCGAGAATGAGTCCTGGCAAAAGATCTATATCCAAGCTGC
CAAGATGA
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protein sequence of Ggra5912.t1

>Ggra5912.t1 ID=Ggra5912.t1|Name=Ggra5912.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MSALAPEPEQPAHIRLNAKQVEALLDCVGDTVFKPALVREIRRNVRVIHP
SDFPVKPVEPSQITRLAESTKRAQAMVAKLHAVRQAHTDLLRREIQRTHE
QATQLPSVPAQQLEPNVQLQSLAGQVNEHINGTVDFIYKLVAASEDTNKR
VQNVSKALEIANSDVNVADHSIIADWTGTFTDIGDQDIEIPIKPTEEVES
YPDSPFVTPRSKMRKRAAMMSRMSPGKRSISKLPR*
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mRNA from alignment at tig00000068_pilon:496171..496878+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5912.t1 ID=Ggra5912.t1|Name=Ggra5912.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000068_pilon:496171..496878+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGCTTGCGCCCGAACCGGAGCAGCCCGCTCACATCCGCCTCAA
CGCCAAGCAGGTGGAAGCACTGCTTGACTGCGTCGGCGACACCGTGTTCA
AACCCGCGCTCGTCAGGGAGATTCGCCGCAACGTGCGCGTCATTCATCCG
TCTGACTTTCCCGTCAAGCCGGTGGAACCATCACAGATTACTCGTCTTGC
GGAGTCAACCAAGCGAGCACAGGCTATGGTTGCGAAGCTTCACGCTGTCC
GACAGGCGCACACGGACTTGCTCCGCCGAGAGATTCAACGCACTCACGAG
CAAGCCACACAACTTCCGTCAGTTCCCGCGCAACAGCTTGAACCGAATGT
GCAGTTGCAATCGCTTGCCGGTCAGGTCAATGAGCATATCAACGGCACTG
TCGACTTTATTTACAAATTGGTGGCAGCGAGCGAAGATACCAATAAGAGA
GTTCAAAACGTCTCCAAGGCGTTGGAAATTGCCAACAGTGATGTCAATGT
TGCCGACCATAGCATTATAGCTGATTGGACCGGTACCTTCACTGATATTG
GCGACCAGGACATAGAGATCCCAATAAAGCCGACGGAGGAAGTTGAAAGC
TACCCGGATTCCCCTTTCGTCACACCCAGATCTAAGATGAGGAAAAGGGC
AGCCATGATGTCGAGAATGAGTCCTGGCAAAAGATCTATATCCAAGCTGC
CAAGATGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:496171..496878+

>Ggra5912.t1 ID=Ggra5912.t1|Name=Ggra5912.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000068_pilon:496171..496878+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGCTTGCGCCCGAACCGGAGCAGCCCGCTCACATCCGCCTCAA
CGCCAAGCAGGTGGAAGCACTGCTTGACTGCGTCGGCGACACCGTGTTCA
AACCCGCGCTCGTCAGGGAGATTCGCCGCAACGTGCGCGTCATTCATCCG
TCTGACTTTCCCGTCAAGCCGGTGGAACCATCACAGATTACTCGTCTTGC
GGAGTCAACCAAGCGAGCACAGGCTATGGTTGCGAAGCTTCACGCTGTCC
GACAGGCGCACACGGACTTGCTCCGCCGAGAGATTCAACGCACTCACGAG
CAAGCCACACAACTTCCGTCAGTTCCCGCGCAACAGCTTGAACCGAATGT
GCAGTTGCAATCGCTTGCCGGTCAGGTCAATGAGCATATCAACGGCACTG
TCGACTTTATTTACAAATTGGTGGCAGCGAGCGAAGATACCAATAAGAGA
GTTCAAAACGTCTCCAAGGCGTTGGAAATTGCCAACAGTGATGTCAATGT
TGCCGACCATAGCATTATAGCTGATTGGACCGGTACCTTCACTGATATTG
GCGACCAGGACATAGAGATCCCAATAAAGCCGACGGAGGAAGTTGAAAGC
TACCCGGATTCCCCTTTCGTCACACCCAGATCTAAGATGAGGAAAAGGGC
AGCCATGATGTCGAGAATGAGTCCTGGCAAAAGATCTATATCCAAGCTGC
CAAGATGA
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