Ggra5904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5904.t1
Unique Name	Ggra5904.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	694

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:475049..477130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5904	Ggra5904	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 475049..477130 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5904.t1.start1	Ggra5904.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 475049..475051 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5904.t1.CDS1	Ggra5904.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 475049..477130 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5904.t1.exon1	Ggra5904.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 475049..477130 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5904.t1.stop1	Ggra5904.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 477128..477130 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5904.t1	Ggra5904.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 475049..477130 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:475049..477130+
coding sequence from alignment at tig00000068_pilon:475049..477130+

mRNA sequence

>Ggra5904.t1 ID=Ggra5904.t1|Name=Ggra5904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=694bp
MSQGKSDIGSEQTDSGKAAVKVAAVVEWAVKALPNDYVELDHNGRSGQPG
CQDEMANNGKREIMRKKFSSLRIKCTGGKLPRMPSSTSMESTRRRISNLV
KSMPCLRRTFKERNGGTRNCDPSRSGFHVAAENADRQGKPGGAPRLNGHV
VPLSMAQAPINRAVESTKLADCSKWAVYPTKYGTLHRMESMKGGEEALRS
GNSSMLLSSPPADVFPGRVARLRDIFEKDGAPLFQGMTGQERERQESASS
SIGAVLSRSENVCSAHVGTNAATHGDGSRLTYRSECFTEKDADFGNLESG
WSGRTESPPVKSWLSDEEKAGSGEREAIVNRTIYENGTVSAGCDVGSPAI
EGQQTTNIMPKTQGCEGEDHWELFDKNQLAFKGDERSYADSTNETFSFSN
LNKLNDTPLKATPIEDACATSFSSLHSKAFETSKPVSPVELKTTSPCHSS
ISEKRSHISPQSASDDEVRENSVKGGRTKERNALLRCHISGNLSSLQHQD
SCSRINPNELSKKCVQTPKCLTSRDVEEMTCSSTERKTSKPSVVNSRKKS
TENSCLNEMLKTSGNHVTTWKENSHDELNKEISVDQSYQISVLENDALEI
DHASSGEFSSDWLHFIDEPKEEEWDEYVDHYVDSGDESCGQCIGPEPEKL
PTRNPEGEEKEEQHGKAKMFATHFSVIFILLTLHLLSINIELR*

spliced messenger RNA

>Ggra5904.t1 ID=Ggra5904.t1|Name=Ggra5904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000068_pilon:475049..477130+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAGGGAAAGAGCGATATTGGTTCGGAGCAAACCGATAGCGGAAA
GGCGGCCGTGAAGGTCGCGGCAGTGGTGGAGTGGGCTGTGAAGGCTCTGC
CGAATGATTACGTTGAGCTTGACCATAACGGTCGAAGCGGTCAACCAGGA
TGCCAGGATGAGATGGCAAACAATGGAAAGAGAGAGATCATGCGTAAGAA
GTTCTCCTCACTGCGCATCAAGTGCACTGGAGGGAAGCTTCCCAGGATGC
CTTCTTCGACGAGCATGGAATCGACAAGACGAAGAATTTCAAACCTTGTC
AAGAGTATGCCCTGCTTGCGCAGAACATTTAAAGAACGTAATGGTGGGAC
GAGGAACTGTGATCCCTCCCGTTCCGGTTTTCATGTTGCTGCTGAGAACG
CGGATAGGCAAGGAAAGCCTGGTGGGGCTCCAAGGTTAAATGGGCATGTT
GTACCGTTAAGCATGGCTCAGGCTCCGATAAACAGAGCAGTCGAGTCTAC
GAAATTGGCGGACTGTTCCAAATGGGCAGTGTATCCCACCAAGTACGGCA
CGCTTCACAGAATGGAAAGCATGAAAGGCGGGGAGGAAGCGTTGCGCTCG
GGCAACAGCTCGATGTTGCTATCTTCTCCTCCTGCTGACGTGTTCCCTGG
AAGAGTTGCAAGGCTTCGGGACATATTTGAGAAGGATGGCGCACCCCTGT
TTCAGGGGATGACAGGACAGGAGAGGGAACGTCAAGAGTCTGCTTCCAGC
TCGATTGGGGCAGTGCTTTCCAGATCAGAGAACGTATGCTCTGCACATGT
CGGCACGAATGCAGCGACACATGGCGATGGCTCGCGCCTTACGTATCGTT
CCGAATGCTTCACGGAAAAAGATGCCGACTTCGGTAATCTGGAATCCGGC
TGGAGTGGAAGGACAGAATCCCCACCTGTGAAGAGTTGGCTTTCTGACGA
AGAAAAAGCCGGTTCCGGGGAAAGGGAAGCAATAGTAAACCGAACCATAT
ACGAGAACGGTACGGTTTCTGCGGGTTGTGATGTGGGCTCGCCCGCAATT
GAGGGGCAACAGACTACAAACATCATGCCGAAAACCCAGGGTTGTGAGGG
AGAGGACCATTGGGAACTCTTTGATAAAAATCAATTAGCATTCAAAGGAG
ATGAGCGTTCATACGCAGACTCTACAAACGAAACTTTCTCCTTTTCTAAC
TTGAACAAGTTAAATGACACACCGTTGAAAGCAACACCAATAGAAGACGC
ATGTGCGACTTCGTTTTCTTCACTCCACTCAAAAGCCTTTGAGACATCCA
AACCAGTTTCACCTGTTGAACTGAAGACCACATCACCTTGCCACTCGTCA
ATTTCTGAGAAGAGATCACATATATCGCCCCAATCCGCCTCTGATGATGA
GGTGCGGGAAAACAGTGTGAAAGGTGGACGCACCAAGGAAAGAAATGCAT
TGTTAAGGTGTCACATATCGGGAAACCTATCTTCCTTGCAACATCAAGAC
AGTTGTAGCAGAATTAACCCAAACGAACTATCCAAGAAATGTGTCCAGAC
GCCTAAATGTCTCACTTCACGAGATGTTGAAGAAATGACGTGTTCGTCAA
CTGAACGCAAAACTTCAAAACCCAGCGTGGTGAATAGCAGAAAAAAGTCA
ACAGAAAACAGTTGCCTGAATGAAATGTTAAAAACATCTGGAAATCACGT
GACAACTTGGAAAGAGAATTCCCATGATGAACTGAACAAAGAAATCTCTG
TTGATCAGAGTTATCAGATTTCAGTTCTCGAGAATGATGCTCTGGAAATT
GATCACGCGTCATCTGGAGAATTCTCCTCTGACTGGCTTCACTTCATCGA
TGAGCCAAAAGAGGAGGAATGGGATGAGTACGTTGACCATTATGTTGATT
CTGGGGATGAGTCTTGCGGCCAATGTATTGGTCCTGAACCAGAGAAGCTT
CCAACCAGAAATCCGGAAGGTGAGGAAAAGGAAGAACAGCATGGTAAGGC
GAAGATGTTCGCGACCCATTTCAGTGTTATCTTTATTCTCTTGACTTTAC
ATTTGTTGTCTATTAACATCGAGCTTCGATAG

protein sequence of Ggra5904.t1

>Ggra5904.t1 ID=Ggra5904.t1|Name=Ggra5904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=694bp
MSQGKSDIGSEQTDSGKAAVKVAAVVEWAVKALPNDYVELDHNGRSGQPG
CQDEMANNGKREIMRKKFSSLRIKCTGGKLPRMPSSTSMESTRRRISNLV
KSMPCLRRTFKERNGGTRNCDPSRSGFHVAAENADRQGKPGGAPRLNGHV
VPLSMAQAPINRAVESTKLADCSKWAVYPTKYGTLHRMESMKGGEEALRS
GNSSMLLSSPPADVFPGRVARLRDIFEKDGAPLFQGMTGQERERQESASS
SIGAVLSRSENVCSAHVGTNAATHGDGSRLTYRSECFTEKDADFGNLESG
WSGRTESPPVKSWLSDEEKAGSGEREAIVNRTIYENGTVSAGCDVGSPAI
EGQQTTNIMPKTQGCEGEDHWELFDKNQLAFKGDERSYADSTNETFSFSN
LNKLNDTPLKATPIEDACATSFSSLHSKAFETSKPVSPVELKTTSPCHSS
ISEKRSHISPQSASDDEVRENSVKGGRTKERNALLRCHISGNLSSLQHQD
SCSRINPNELSKKCVQTPKCLTSRDVEEMTCSSTERKTSKPSVVNSRKKS
TENSCLNEMLKTSGNHVTTWKENSHDELNKEISVDQSYQISVLENDALEI
DHASSGEFSSDWLHFIDEPKEEEWDEYVDHYVDSGDESCGQCIGPEPEKL
PTRNPEGEEKEEQHGKAKMFATHFSVIFILLTLHLLSINIELR*

mRNA from alignment at tig00000068_pilon:475049..477130+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5904.t1 ID=Ggra5904.t1|Name=Ggra5904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000068_pilon:475049..477130+ (Gracilaria gracilis GNS1m male)
ATGTCGCAGGGAAAGAGCGATATTGGTTCGGAGCAAACCGATAGCGGAAA
GGCGGCCGTGAAGGTCGCGGCAGTGGTGGAGTGGGCTGTGAAGGCTCTGC
CGAATGATTACGTTGAGCTTGACCATAACGGTCGAAGCGGTCAACCAGGA
TGCCAGGATGAGATGGCAAACAATGGAAAGAGAGAGATCATGCGTAAGAA
GTTCTCCTCACTGCGCATCAAGTGCACTGGAGGGAAGCTTCCCAGGATGC
CTTCTTCGACGAGCATGGAATCGACAAGACGAAGAATTTCAAACCTTGTC
AAGAGTATGCCCTGCTTGCGCAGAACATTTAAAGAACGTAATGGTGGGAC
GAGGAACTGTGATCCCTCCCGTTCCGGTTTTCATGTTGCTGCTGAGAACG
CGGATAGGCAAGGAAAGCCTGGTGGGGCTCCAAGGTTAAATGGGCATGTT
GTACCGTTAAGCATGGCTCAGGCTCCGATAAACAGAGCAGTCGAGTCTAC
GAAATTGGCGGACTGTTCCAAATGGGCAGTGTATCCCACCAAGTACGGCA
CGCTTCACAGAATGGAAAGCATGAAAGGCGGGGAGGAAGCGTTGCGCTCG
GGCAACAGCTCGATGTTGCTATCTTCTCCTCCTGCTGACGTGTTCCCTGG
AAGAGTTGCAAGGCTTCGGGACATATTTGAGAAGGATGGCGCACCCCTGT
TTCAGGGGATGACAGGACAGGAGAGGGAACGTCAAGAGTCTGCTTCCAGC
TCGATTGGGGCAGTGCTTTCCAGATCAGAGAACGTATGCTCTGCACATGT
CGGCACGAATGCAGCGACACATGGCGATGGCTCGCGCCTTACGTATCGTT
CCGAATGCTTCACGGAAAAAGATGCCGACTTCGGTAATCTGGAATCCGGC
TGGAGTGGAAGGACAGAATCCCCACCTGTGAAGAGTTGGCTTTCTGACGA
AGAAAAAGCCGGTTCCGGGGAAAGGGAAGCAATAGTAAACCGAACCATAT
ACGAGAACGGTACGGTTTCTGCGGGTTGTGATGTGGGCTCGCCCGCAATT
GAGGGGCAACAGACTACAAACATCATGCCGAAAACCCAGGGTTGTGAGGG
AGAGGACCATTGGGAACTCTTTGATAAAAATCAATTAGCATTCAAAGGAG
ATGAGCGTTCATACGCAGACTCTACAAACGAAACTTTCTCCTTTTCTAAC
TTGAACAAGTTAAATGACACACCGTTGAAAGCAACACCAATAGAAGACGC
ATGTGCGACTTCGTTTTCTTCACTCCACTCAAAAGCCTTTGAGACATCCA
AACCAGTTTCACCTGTTGAACTGAAGACCACATCACCTTGCCACTCGTCA
ATTTCTGAGAAGAGATCACATATATCGCCCCAATCCGCCTCTGATGATGA
GGTGCGGGAAAACAGTGTGAAAGGTGGACGCACCAAGGAAAGAAATGCAT
TGTTAAGGTGTCACATATCGGGAAACCTATCTTCCTTGCAACATCAAGAC
AGTTGTAGCAGAATTAACCCAAACGAACTATCCAAGAAATGTGTCCAGAC
GCCTAAATGTCTCACTTCACGAGATGTTGAAGAAATGACGTGTTCGTCAA
CTGAACGCAAAACTTCAAAACCCAGCGTGGTGAATAGCAGAAAAAAGTCA
ACAGAAAACAGTTGCCTGAATGAAATGTTAAAAACATCTGGAAATCACGT
GACAACTTGGAAAGAGAATTCCCATGATGAACTGAACAAAGAAATCTCTG
TTGATCAGAGTTATCAGATTTCAGTTCTCGAGAATGATGCTCTGGAAATT
GATCACGCGTCATCTGGAGAATTCTCCTCTGACTGGCTTCACTTCATCGA
TGAGCCAAAAGAGGAGGAATGGGATGAGTACGTTGACCATTATGTTGATT
CTGGGGATGAGTCTTGCGGCCAATGTATTGGTCCTGAACCAGAGAAGCTT
CCAACCAGAAATCCGGAAGGTGAGGAAAAGGAAGAACAGCATGGTAAGGC
GAAGATGTTCGCGACCCATTTCAGTGTTATCTTTATTCTCTTGACTTTAC
ATTTGTTGTCTATTAACATCGAGCTTCGATAG

Coding sequence (CDS) from alignment at tig00000068_pilon:475049..477130+

>Ggra5904.t1 ID=Ggra5904.t1|Name=Ggra5904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2082bp|location=Sequence derived from alignment at tig00000068_pilon:475049..477130+ (Gracilaria gracilis GNS1m male)
ATGTCGCAGGGAAAGAGCGATATTGGTTCGGAGCAAACCGATAGCGGAAA
GGCGGCCGTGAAGGTCGCGGCAGTGGTGGAGTGGGCTGTGAAGGCTCTGC
CGAATGATTACGTTGAGCTTGACCATAACGGTCGAAGCGGTCAACCAGGA
TGCCAGGATGAGATGGCAAACAATGGAAAGAGAGAGATCATGCGTAAGAA
GTTCTCCTCACTGCGCATCAAGTGCACTGGAGGGAAGCTTCCCAGGATGC
CTTCTTCGACGAGCATGGAATCGACAAGACGAAGAATTTCAAACCTTGTC
AAGAGTATGCCCTGCTTGCGCAGAACATTTAAAGAACGTAATGGTGGGAC
GAGGAACTGTGATCCCTCCCGTTCCGGTTTTCATGTTGCTGCTGAGAACG
CGGATAGGCAAGGAAAGCCTGGTGGGGCTCCAAGGTTAAATGGGCATGTT
GTACCGTTAAGCATGGCTCAGGCTCCGATAAACAGAGCAGTCGAGTCTAC
GAAATTGGCGGACTGTTCCAAATGGGCAGTGTATCCCACCAAGTACGGCA
CGCTTCACAGAATGGAAAGCATGAAAGGCGGGGAGGAAGCGTTGCGCTCG
GGCAACAGCTCGATGTTGCTATCTTCTCCTCCTGCTGACGTGTTCCCTGG
AAGAGTTGCAAGGCTTCGGGACATATTTGAGAAGGATGGCGCACCCCTGT
TTCAGGGGATGACAGGACAGGAGAGGGAACGTCAAGAGTCTGCTTCCAGC
TCGATTGGGGCAGTGCTTTCCAGATCAGAGAACGTATGCTCTGCACATGT
CGGCACGAATGCAGCGACACATGGCGATGGCTCGCGCCTTACGTATCGTT
CCGAATGCTTCACGGAAAAAGATGCCGACTTCGGTAATCTGGAATCCGGC
TGGAGTGGAAGGACAGAATCCCCACCTGTGAAGAGTTGGCTTTCTGACGA
AGAAAAAGCCGGTTCCGGGGAAAGGGAAGCAATAGTAAACCGAACCATAT
ACGAGAACGGTACGGTTTCTGCGGGTTGTGATGTGGGCTCGCCCGCAATT
GAGGGGCAACAGACTACAAACATCATGCCGAAAACCCAGGGTTGTGAGGG
AGAGGACCATTGGGAACTCTTTGATAAAAATCAATTAGCATTCAAAGGAG
ATGAGCGTTCATACGCAGACTCTACAAACGAAACTTTCTCCTTTTCTAAC
TTGAACAAGTTAAATGACACACCGTTGAAAGCAACACCAATAGAAGACGC
ATGTGCGACTTCGTTTTCTTCACTCCACTCAAAAGCCTTTGAGACATCCA
AACCAGTTTCACCTGTTGAACTGAAGACCACATCACCTTGCCACTCGTCA
ATTTCTGAGAAGAGATCACATATATCGCCCCAATCCGCCTCTGATGATGA
GGTGCGGGAAAACAGTGTGAAAGGTGGACGCACCAAGGAAAGAAATGCAT
TGTTAAGGTGTCACATATCGGGAAACCTATCTTCCTTGCAACATCAAGAC
AGTTGTAGCAGAATTAACCCAAACGAACTATCCAAGAAATGTGTCCAGAC
GCCTAAATGTCTCACTTCACGAGATGTTGAAGAAATGACGTGTTCGTCAA
CTGAACGCAAAACTTCAAAACCCAGCGTGGTGAATAGCAGAAAAAAGTCA
ACAGAAAACAGTTGCCTGAATGAAATGTTAAAAACATCTGGAAATCACGT
GACAACTTGGAAAGAGAATTCCCATGATGAACTGAACAAAGAAATCTCTG
TTGATCAGAGTTATCAGATTTCAGTTCTCGAGAATGATGCTCTGGAAATT
GATCACGCGTCATCTGGAGAATTCTCCTCTGACTGGCTTCACTTCATCGA
TGAGCCAAAAGAGGAGGAATGGGATGAGTACGTTGACCATTATGTTGATT
CTGGGGATGAGTCTTGCGGCCAATGTATTGGTCCTGAACCAGAGAAGCTT
CCAACCAGAAATCCGGAAGGTGAGGAAAAGGAAGAACAGCATGGTAAGGC
GAAGATGTTCGCGACCCATTTCAGTGTTATCTTTATTCTCTTGACTTTAC
ATTTGTTGTCTATTAACATCGAGCTTCGATAG