Ggra5836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5836.t1
Unique NameGgra5836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:69461..70738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4787.PITG_00926T0
Max annot lvl4776|Peronosporales
Evalue1.07e-18
EggNOG OGs2CTDP@1|root,2RFZI@2759|Eukaryota,3QHHE@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5836Ggra5836Gracilaria gracilis GNS1m malegenetig00000068_pilon 69461..70738 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5836.t1.stop1Ggra5836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 69461..69463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5836.t1.CDS1Ggra5836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 69461..70738 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5836.t1.exon1Ggra5836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 69461..70738 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5836.t1.start1Ggra5836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 70736..70738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5836.t1Ggra5836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 69461..70738 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5836.t1 ID=Ggra5836.t1|Name=Ggra5836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp
MQSTEPEIYSEDSSLISEAMQVDTVEIESLHAPSVSQRNKTNVSEACNAF
EAANSATEDIWAALFCDPAEYMNDILEEEVKEIDHVGENENAENNMTTAE
RSNAHKIGGLQGWNYANAFEEVKLQLDNADSILGIRFRKEGNTVIKNVVK
EIRVNDNNPQFFDESNISSLDMFDVFFPASLLEKLRAYINRVLCARKEKA
TTAMELKGVIVTHVLAASYGTTVSVMTSPENREFCYQTGLSGKRYSEIWA
ALSGTRKRRQPVEDCDSGWFNKPILGNQFITELEHKLSAINRVYLHVVGQ
TVFSLDDDHQRLRSRAVKELTNLSHVNNLQKALGRVNNALCSGLISGFIA
SHYSRPGEKLIHVWKRLVQLLQGAATPDSRKPMEKAIFAADRGYNGKQTV
DFITDKLGASGIGTPKRSLDYPFVF*
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spliced messenger RNA

>Ggra5836.t1 ID=Ggra5836.t1|Name=Ggra5836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000068_pilon:69461..70738- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCACAGAACCGGAGATATACAGTGAAGATTCCTCCTTGATTTC
CGAAGCTATGCAAGTCGACACAGTAGAGATTGAATCACTACACGCTCCGA
GTGTTTCACAAAGAAACAAAACGAATGTTTCCGAGGCCTGCAACGCCTTT
GAAGCTGCAAACAGTGCCACTGAAGACATTTGGGCGGCATTATTTTGCGA
TCCGGCGGAGTACATGAACGACATTCTCGAAGAAGAGGTGAAGGAAATTG
ACCATGTAGGAGAAAATGAGAATGCGGAAAATAACATGACGACTGCAGAG
CGCAGCAACGCCCACAAAATAGGAGGGTTACAAGGATGGAACTACGCCAA
TGCATTTGAAGAAGTCAAACTCCAGCTCGATAATGCAGACAGTATTCTTG
GGATCCGTTTCCGCAAAGAGGGGAACACAGTAATAAAGAATGTTGTGAAA
GAAATTCGTGTGAACGACAACAACCCGCAGTTCTTTGATGAATCAAACAT
ATCATCACTAGATATGTTTGATGTTTTCTTTCCTGCTTCACTGCTGGAGA
AACTACGTGCATATATTAATCGGGTGTTGTGTGCGAGGAAAGAGAAGGCA
ACAACTGCCATGGAGTTGAAGGGAGTAATAGTAACTCATGTTCTAGCTGC
TTCGTACGGGACGACAGTATCCGTCATGACATCTCCTGAAAATCGGGAGT
TCTGCTATCAGACAGGTCTGTCAGGGAAACGATACAGTGAGATATGGGCT
GCTCTCAGTGGGACGAGAAAACGACGACAACCTGTCGAAGACTGTGACAG
TGGATGGTTCAATAAACCCATTCTGGGAAACCAATTCATCACTGAGCTGG
AGCATAAACTTTCCGCAATCAACAGAGTTTATCTCCATGTTGTGGGGCAG
ACGGTTTTCAGCTTGGATGACGATCATCAAAGGCTGCGTTCTCGTGCTGT
AAAGGAGCTGACAAACTTGTCGCATGTCAACAATCTGCAGAAGGCCCTCG
GACGAGTTAATAACGCCTTGTGTTCTGGTTTAATATCAGGATTTATTGCC
AGTCACTATTCAAGACCAGGTGAAAAGCTGATTCATGTGTGGAAACGCTT
AGTGCAGCTCTTGCAAGGCGCTGCAACCCCAGACTCTAGAAAGCCAATGG
AGAAGGCTATTTTTGCCGCCGACAGAGGTTACAATGGGAAACAGACAGTC
GACTTCATCACCGATAAGCTGGGAGCTAGTGGGATTGGCACGCCTAAGAG
GAGCCTTGATTACCCCTTTGTGTTTTGA
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protein sequence of Ggra5836.t1

>Ggra5836.t1 ID=Ggra5836.t1|Name=Ggra5836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=426bp
MQSTEPEIYSEDSSLISEAMQVDTVEIESLHAPSVSQRNKTNVSEACNAF
EAANSATEDIWAALFCDPAEYMNDILEEEVKEIDHVGENENAENNMTTAE
RSNAHKIGGLQGWNYANAFEEVKLQLDNADSILGIRFRKEGNTVIKNVVK
EIRVNDNNPQFFDESNISSLDMFDVFFPASLLEKLRAYINRVLCARKEKA
TTAMELKGVIVTHVLAASYGTTVSVMTSPENREFCYQTGLSGKRYSEIWA
ALSGTRKRRQPVEDCDSGWFNKPILGNQFITELEHKLSAINRVYLHVVGQ
TVFSLDDDHQRLRSRAVKELTNLSHVNNLQKALGRVNNALCSGLISGFIA
SHYSRPGEKLIHVWKRLVQLLQGAATPDSRKPMEKAIFAADRGYNGKQTV
DFITDKLGASGIGTPKRSLDYPFVF*
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mRNA from alignment at tig00000068_pilon:69461..70738-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5836.t1 ID=Ggra5836.t1|Name=Ggra5836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000068_pilon:69461..70738- (Gracilaria gracilis GNS1m male)
ATGCAGAGCACAGAACCGGAGATATACAGTGAAGATTCCTCCTTGATTTC
CGAAGCTATGCAAGTCGACACAGTAGAGATTGAATCACTACACGCTCCGA
GTGTTTCACAAAGAAACAAAACGAATGTTTCCGAGGCCTGCAACGCCTTT
GAAGCTGCAAACAGTGCCACTGAAGACATTTGGGCGGCATTATTTTGCGA
TCCGGCGGAGTACATGAACGACATTCTCGAAGAAGAGGTGAAGGAAATTG
ACCATGTAGGAGAAAATGAGAATGCGGAAAATAACATGACGACTGCAGAG
CGCAGCAACGCCCACAAAATAGGAGGGTTACAAGGATGGAACTACGCCAA
TGCATTTGAAGAAGTCAAACTCCAGCTCGATAATGCAGACAGTATTCTTG
GGATCCGTTTCCGCAAAGAGGGGAACACAGTAATAAAGAATGTTGTGAAA
GAAATTCGTGTGAACGACAACAACCCGCAGTTCTTTGATGAATCAAACAT
ATCATCACTAGATATGTTTGATGTTTTCTTTCCTGCTTCACTGCTGGAGA
AACTACGTGCATATATTAATCGGGTGTTGTGTGCGAGGAAAGAGAAGGCA
ACAACTGCCATGGAGTTGAAGGGAGTAATAGTAACTCATGTTCTAGCTGC
TTCGTACGGGACGACAGTATCCGTCATGACATCTCCTGAAAATCGGGAGT
TCTGCTATCAGACAGGTCTGTCAGGGAAACGATACAGTGAGATATGGGCT
GCTCTCAGTGGGACGAGAAAACGACGACAACCTGTCGAAGACTGTGACAG
TGGATGGTTCAATAAACCCATTCTGGGAAACCAATTCATCACTGAGCTGG
AGCATAAACTTTCCGCAATCAACAGAGTTTATCTCCATGTTGTGGGGCAG
ACGGTTTTCAGCTTGGATGACGATCATCAAAGGCTGCGTTCTCGTGCTGT
AAAGGAGCTGACAAACTTGTCGCATGTCAACAATCTGCAGAAGGCCCTCG
GACGAGTTAATAACGCCTTGTGTTCTGGTTTAATATCAGGATTTATTGCC
AGTCACTATTCAAGACCAGGTGAAAAGCTGATTCATGTGTGGAAACGCTT
AGTGCAGCTCTTGCAAGGCGCTGCAACCCCAGACTCTAGAAAGCCAATGG
AGAAGGCTATTTTTGCCGCCGACAGAGGTTACAATGGGAAACAGACAGTC
GACTTCATCACCGATAAGCTGGGAGCTAGTGGGATTGGCACGCCTAAGAG
GAGCCTTGATTACCCCTTTGTGTTTTGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:69461..70738-

>Ggra5836.t1 ID=Ggra5836.t1|Name=Ggra5836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000068_pilon:69461..70738- (Gracilaria gracilis GNS1m male)
ATGCAGAGCACAGAACCGGAGATATACAGTGAAGATTCCTCCTTGATTTC
CGAAGCTATGCAAGTCGACACAGTAGAGATTGAATCACTACACGCTCCGA
GTGTTTCACAAAGAAACAAAACGAATGTTTCCGAGGCCTGCAACGCCTTT
GAAGCTGCAAACAGTGCCACTGAAGACATTTGGGCGGCATTATTTTGCGA
TCCGGCGGAGTACATGAACGACATTCTCGAAGAAGAGGTGAAGGAAATTG
ACCATGTAGGAGAAAATGAGAATGCGGAAAATAACATGACGACTGCAGAG
CGCAGCAACGCCCACAAAATAGGAGGGTTACAAGGATGGAACTACGCCAA
TGCATTTGAAGAAGTCAAACTCCAGCTCGATAATGCAGACAGTATTCTTG
GGATCCGTTTCCGCAAAGAGGGGAACACAGTAATAAAGAATGTTGTGAAA
GAAATTCGTGTGAACGACAACAACCCGCAGTTCTTTGATGAATCAAACAT
ATCATCACTAGATATGTTTGATGTTTTCTTTCCTGCTTCACTGCTGGAGA
AACTACGTGCATATATTAATCGGGTGTTGTGTGCGAGGAAAGAGAAGGCA
ACAACTGCCATGGAGTTGAAGGGAGTAATAGTAACTCATGTTCTAGCTGC
TTCGTACGGGACGACAGTATCCGTCATGACATCTCCTGAAAATCGGGAGT
TCTGCTATCAGACAGGTCTGTCAGGGAAACGATACAGTGAGATATGGGCT
GCTCTCAGTGGGACGAGAAAACGACGACAACCTGTCGAAGACTGTGACAG
TGGATGGTTCAATAAACCCATTCTGGGAAACCAATTCATCACTGAGCTGG
AGCATAAACTTTCCGCAATCAACAGAGTTTATCTCCATGTTGTGGGGCAG
ACGGTTTTCAGCTTGGATGACGATCATCAAAGGCTGCGTTCTCGTGCTGT
AAAGGAGCTGACAAACTTGTCGCATGTCAACAATCTGCAGAAGGCCCTCG
GACGAGTTAATAACGCCTTGTGTTCTGGTTTAATATCAGGATTTATTGCC
AGTCACTATTCAAGACCAGGTGAAAAGCTGATTCATGTGTGGAAACGCTT
AGTGCAGCTCTTGCAAGGCGCTGCAACCCCAGACTCTAGAAAGCCAATGG
AGAAGGCTATTTTTGCCGCCGACAGAGGTTACAATGGGAAACAGACAGTC
GACTTCATCACCGATAAGCTGGGAGCTAGTGGGATTGGCACGCCTAAGAG
GAGCCTTGATTACCCCTTTGTGTTTTGA
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