Ggra5829.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5829.t1
Unique NameGgra5829.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:413386..414765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra87757
PFAMsNop53
Max annot lvl4776|Peronosporales
KEGG koko:K14840
KEGG Pathwayko05168,map05168
Evalue3.23e-08
EggNOG OGsKOG2823@1|root,KOG2823@2759|Eukaryota,3QBIB@4776|Peronosporales
DescriptionNop53 (60S ribosomal biogenesis)
COG categoryS
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5829Ggra5829Gracilaria gracilis GNS1m malegenetig00000935_pilon 413386..414765 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5829.t1.start1Ggra5829.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 413386..413388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5829.t1.CDS1Ggra5829.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 413386..414765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5829.t1.exon1Ggra5829.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 413386..414765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5829.t1.stop1Ggra5829.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 414763..414765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5829.t1Ggra5829.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 413386..414765 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5829.t1 ID=Ggra5829.t1|Name=Ggra5829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=460bp
MAKTGTKRKRKERESRVAAEVEQGKRRTATELKLLGTSVTKDVADDSIFT
IDRKGVSKEVLDNQFRGQALQQRRAAKRARRQAPKERKSEAGVRTAQDRV
ENVKFVGKKKKVGVGLVEKQIMGKKKFDKPEGHFGNRSAVVREMLQKKGE
KPDIWSASHEMEVEDVETDLFEKKKGVAQRRKVLEEKVHARHRKAQSIIH
PDSGLSVNPTHSDHQDTLGEAVASIVQKDDDKRWDEKKMSYDPAILLEST
EGEVADTGMKLDENLSDSDSGREADVVAFTQGVPERKTRAQRNKESRKRI
MAANIAKKKADAKQAKDIENIVSLTSQAEEEADKLNGITKQRLLEENPPL
PPKPDMPVLRRIAGEKVRNEKAGNPVALSTELSESMRNVKMPKANPLVRD
RFLSFERRGFIAPPKVFPKEARRMARDKLREERKERRRRKGRGSASNLTF
WRNGKRAVL*
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spliced messenger RNA

>Ggra5829.t1 ID=Ggra5829.t1|Name=Ggra5829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000935_pilon:413386..414765+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAACCGGAACTAAGCGAAAGCGTAAGGAGCGCGAGAGCCGTGT
AGCTGCCGAAGTAGAACAAGGAAAACGAAGAACAGCGACAGAACTGAAGC
TGCTGGGAACCAGCGTAACTAAAGATGTGGCTGATGACTCTATTTTCACT
ATCGACAGGAAAGGTGTGTCAAAAGAAGTTTTGGATAACCAGTTTCGAGG
TCAGGCTTTGCAGCAGAGAAGAGCTGCGAAGCGAGCACGGCGCCAGGCTC
CGAAGGAAAGAAAGTCCGAAGCAGGGGTAAGGACTGCCCAAGATAGAGTG
GAAAACGTCAAATTCGTTGGTAAGAAGAAGAAAGTGGGTGTGGGTCTAGT
GGAGAAGCAGATAATGGGTAAGAAGAAATTTGATAAGCCCGAAGGTCATT
TTGGAAACAGGAGCGCTGTCGTTCGCGAAATGTTGCAGAAGAAAGGCGAA
AAGCCTGACATATGGTCTGCATCTCATGAAATGGAAGTTGAAGACGTTGA
AACCGATTTATTTGAAAAGAAGAAGGGGGTCGCCCAGAGACGGAAAGTTC
TCGAAGAGAAGGTTCATGCACGACATCGAAAAGCGCAGTCCATTATACAT
CCTGACAGCGGCTTAAGCGTAAACCCAACCCATTCTGACCATCAAGACAC
TTTAGGTGAAGCAGTGGCAAGCATTGTGCAGAAGGACGATGACAAGCGTT
GGGATGAAAAGAAGATGAGCTATGATCCAGCTATTCTACTTGAGAGCACG
GAAGGCGAAGTTGCCGACACGGGGATGAAACTAGACGAAAACTTAAGTGA
TTCTGACAGTGGAAGAGAGGCGGATGTCGTCGCTTTTACGCAAGGTGTTC
CCGAAAGGAAAACAAGAGCTCAAAGGAACAAAGAGTCTAGGAAGCGAATC
ATGGCAGCCAATATTGCAAAAAAGAAGGCAGACGCGAAACAAGCAAAGGA
CATTGAGAACATTGTCAGTCTTACAAGCCAAGCTGAGGAGGAAGCAGACA
AACTTAATGGCATAACAAAGCAGAGGCTGTTGGAAGAAAATCCTCCCCTA
CCCCCGAAACCTGATATGCCAGTGTTGCGGCGCATAGCAGGAGAAAAGGT
TCGAAATGAAAAGGCTGGCAACCCAGTAGCCTTGAGCACTGAACTATCAG
AAAGCATGCGAAACGTGAAGATGCCAAAAGCAAATCCGCTTGTGCGTGAC
AGGTTCTTAAGCTTTGAAAGGAGAGGTTTTATAGCGCCTCCGAAGGTCTT
TCCCAAGGAAGCACGTAGAATGGCAAGGGACAAACTTCGGGAGGAGAGGA
AGGAGAGAAGGAGAAGAAAGGGTAGAGGTAGCGCTTCCAATCTTACGTTT
TGGAGAAACGGCAAAAGAGCAGTACTCTAG
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protein sequence of Ggra5829.t1

>Ggra5829.t1 ID=Ggra5829.t1|Name=Ggra5829.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=460bp
MAKTGTKRKRKERESRVAAEVEQGKRRTATELKLLGTSVTKDVADDSIFT
IDRKGVSKEVLDNQFRGQALQQRRAAKRARRQAPKERKSEAGVRTAQDRV
ENVKFVGKKKKVGVGLVEKQIMGKKKFDKPEGHFGNRSAVVREMLQKKGE
KPDIWSASHEMEVEDVETDLFEKKKGVAQRRKVLEEKVHARHRKAQSIIH
PDSGLSVNPTHSDHQDTLGEAVASIVQKDDDKRWDEKKMSYDPAILLEST
EGEVADTGMKLDENLSDSDSGREADVVAFTQGVPERKTRAQRNKESRKRI
MAANIAKKKADAKQAKDIENIVSLTSQAEEEADKLNGITKQRLLEENPPL
PPKPDMPVLRRIAGEKVRNEKAGNPVALSTELSESMRNVKMPKANPLVRD
RFLSFERRGFIAPPKVFPKEARRMARDKLREERKERRRRKGRGSASNLTF
WRNGKRAVL*
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mRNA from alignment at tig00000935_pilon:413386..414765+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5829.t1 ID=Ggra5829.t1|Name=Ggra5829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000935_pilon:413386..414765+ (Gracilaria gracilis GNS1m male)
ATGGCGAAAACCGGAACTAAGCGAAAGCGTAAGGAGCGCGAGAGCCGTGT
AGCTGCCGAAGTAGAACAAGGAAAACGAAGAACAGCGACAGAACTGAAGC
TGCTGGGAACCAGCGTAACTAAAGATGTGGCTGATGACTCTATTTTCACT
ATCGACAGGAAAGGTGTGTCAAAAGAAGTTTTGGATAACCAGTTTCGAGG
TCAGGCTTTGCAGCAGAGAAGAGCTGCGAAGCGAGCACGGCGCCAGGCTC
CGAAGGAAAGAAAGTCCGAAGCAGGGGTAAGGACTGCCCAAGATAGAGTG
GAAAACGTCAAATTCGTTGGTAAGAAGAAGAAAGTGGGTGTGGGTCTAGT
GGAGAAGCAGATAATGGGTAAGAAGAAATTTGATAAGCCCGAAGGTCATT
TTGGAAACAGGAGCGCTGTCGTTCGCGAAATGTTGCAGAAGAAAGGCGAA
AAGCCTGACATATGGTCTGCATCTCATGAAATGGAAGTTGAAGACGTTGA
AACCGATTTATTTGAAAAGAAGAAGGGGGTCGCCCAGAGACGGAAAGTTC
TCGAAGAGAAGGTTCATGCACGACATCGAAAAGCGCAGTCCATTATACAT
CCTGACAGCGGCTTAAGCGTAAACCCAACCCATTCTGACCATCAAGACAC
TTTAGGTGAAGCAGTGGCAAGCATTGTGCAGAAGGACGATGACAAGCGTT
GGGATGAAAAGAAGATGAGCTATGATCCAGCTATTCTACTTGAGAGCACG
GAAGGCGAAGTTGCCGACACGGGGATGAAACTAGACGAAAACTTAAGTGA
TTCTGACAGTGGAAGAGAGGCGGATGTCGTCGCTTTTACGCAAGGTGTTC
CCGAAAGGAAAACAAGAGCTCAAAGGAACAAAGAGTCTAGGAAGCGAATC
ATGGCAGCCAATATTGCAAAAAAGAAGGCAGACGCGAAACAAGCAAAGGA
CATTGAGAACATTGTCAGTCTTACAAGCCAAGCTGAGGAGGAAGCAGACA
AACTTAATGGCATAACAAAGCAGAGGCTGTTGGAAGAAAATCCTCCCCTA
CCCCCGAAACCTGATATGCCAGTGTTGCGGCGCATAGCAGGAGAAAAGGT
TCGAAATGAAAAGGCTGGCAACCCAGTAGCCTTGAGCACTGAACTATCAG
AAAGCATGCGAAACGTGAAGATGCCAAAAGCAAATCCGCTTGTGCGTGAC
AGGTTCTTAAGCTTTGAAAGGAGAGGTTTTATAGCGCCTCCGAAGGTCTT
TCCCAAGGAAGCACGTAGAATGGCAAGGGACAAACTTCGGGAGGAGAGGA
AGGAGAGAAGGAGAAGAAAGGGTAGAGGTAGCGCTTCCAATCTTACGTTT
TGGAGAAACGGCAAAAGAGCAGTACTCTAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:413386..414765+

>Ggra5829.t1 ID=Ggra5829.t1|Name=Ggra5829.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00000935_pilon:413386..414765+ (Gracilaria gracilis GNS1m male)
ATGGCGAAAACCGGAACTAAGCGAAAGCGTAAGGAGCGCGAGAGCCGTGT
AGCTGCCGAAGTAGAACAAGGAAAACGAAGAACAGCGACAGAACTGAAGC
TGCTGGGAACCAGCGTAACTAAAGATGTGGCTGATGACTCTATTTTCACT
ATCGACAGGAAAGGTGTGTCAAAAGAAGTTTTGGATAACCAGTTTCGAGG
TCAGGCTTTGCAGCAGAGAAGAGCTGCGAAGCGAGCACGGCGCCAGGCTC
CGAAGGAAAGAAAGTCCGAAGCAGGGGTAAGGACTGCCCAAGATAGAGTG
GAAAACGTCAAATTCGTTGGTAAGAAGAAGAAAGTGGGTGTGGGTCTAGT
GGAGAAGCAGATAATGGGTAAGAAGAAATTTGATAAGCCCGAAGGTCATT
TTGGAAACAGGAGCGCTGTCGTTCGCGAAATGTTGCAGAAGAAAGGCGAA
AAGCCTGACATATGGTCTGCATCTCATGAAATGGAAGTTGAAGACGTTGA
AACCGATTTATTTGAAAAGAAGAAGGGGGTCGCCCAGAGACGGAAAGTTC
TCGAAGAGAAGGTTCATGCACGACATCGAAAAGCGCAGTCCATTATACAT
CCTGACAGCGGCTTAAGCGTAAACCCAACCCATTCTGACCATCAAGACAC
TTTAGGTGAAGCAGTGGCAAGCATTGTGCAGAAGGACGATGACAAGCGTT
GGGATGAAAAGAAGATGAGCTATGATCCAGCTATTCTACTTGAGAGCACG
GAAGGCGAAGTTGCCGACACGGGGATGAAACTAGACGAAAACTTAAGTGA
TTCTGACAGTGGAAGAGAGGCGGATGTCGTCGCTTTTACGCAAGGTGTTC
CCGAAAGGAAAACAAGAGCTCAAAGGAACAAAGAGTCTAGGAAGCGAATC
ATGGCAGCCAATATTGCAAAAAAGAAGGCAGACGCGAAACAAGCAAAGGA
CATTGAGAACATTGTCAGTCTTACAAGCCAAGCTGAGGAGGAAGCAGACA
AACTTAATGGCATAACAAAGCAGAGGCTGTTGGAAGAAAATCCTCCCCTA
CCCCCGAAACCTGATATGCCAGTGTTGCGGCGCATAGCAGGAGAAAAGGT
TCGAAATGAAAAGGCTGGCAACCCAGTAGCCTTGAGCACTGAACTATCAG
AAAGCATGCGAAACGTGAAGATGCCAAAAGCAAATCCGCTTGTGCGTGAC
AGGTTCTTAAGCTTTGAAAGGAGAGGTTTTATAGCGCCTCCGAAGGTCTT
TCCCAAGGAAGCACGTAGAATGGCAAGGGACAAACTTCGGGAGGAGAGGA
AGGAGAGAAGGAGAAGAAAGGGTAGAGGTAGCGCTTCCAATCTTACGTTT
TGGAGAAACGGCAAAAGAGCAGTACTCTAG
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