Ggra5785.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5785.t1
Unique NameGgra5785.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:241215..241571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122176.KB903538_gene1509
Preferred namephrB
PFAMsDNA_photolyase,FAD_binding_7
Max annot lvl976|Bacteroidetes
KEGG koko:K01669
Evalue1.15e-43
EggNOG OGsCOG0415@1|root,COG0415@2|Bacteria,4NDW0@976|Bacteroidetes,1IRAI@117747|Sphingobacteriia
EC4.1.99.3
DescriptionDNA photolyase
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5785Ggra5785Gracilaria gracilis GNS1m malegenetig00000935_pilon 241215..241571 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5785.t1.stop1Ggra5785.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 241215..241217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5785.t1.CDS1Ggra5785.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 241215..241571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5785.t1.exon1Ggra5785.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 241215..241571 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5785.t1.start1Ggra5785.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 241569..241571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5785.t1Ggra5785.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 241215..241571 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5785.t1 ID=Ggra5785.t1|Name=Ggra5785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=119bp
MRELALTGFMSNRGRQNVASFLIHDLEFPDWRAGAEYFESILIDHDVASN
WGNWAYLAGVGSDPRGGRKFNVIKQSIQYDPNGWFIQRWCPELVDLPPPM
IHEPHKLSAEALKGVDII*
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spliced messenger RNA

>Ggra5785.t1 ID=Ggra5785.t1|Name=Ggra5785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000935_pilon:241215..241571- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAACTTGCCCTAACTGGGTTTATGAGCAATCGCGGGAGACAAAA
TGTAGCATCTTTTCTCATTCATGATCTTGAGTTTCCGGATTGGAGAGCGG
GAGCTGAATACTTTGAAAGCATTCTCATCGATCACGATGTGGCTTCAAAC
TGGGGCAACTGGGCGTATCTTGCTGGGGTTGGCAGTGATCCTCGTGGGGG
TCGGAAGTTTAACGTTATAAAGCAAAGTATACAATACGACCCAAATGGAT
GGTTCATTCAACGATGGTGTCCTGAACTTGTCGACTTGCCCCCACCGATG
ATTCATGAACCACATAAATTGTCTGCCGAGGCGCTCAAGGGTGTGGATAT
AATCTGA
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protein sequence of Ggra5785.t1

>Ggra5785.t1 ID=Ggra5785.t1|Name=Ggra5785.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=119bp
MRELALTGFMSNRGRQNVASFLIHDLEFPDWRAGAEYFESILIDHDVASN
WGNWAYLAGVGSDPRGGRKFNVIKQSIQYDPNGWFIQRWCPELVDLPPPM
IHEPHKLSAEALKGVDII*
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mRNA from alignment at tig00000935_pilon:241215..241571-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5785.t1 ID=Ggra5785.t1|Name=Ggra5785.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000935_pilon:241215..241571- (Gracilaria gracilis GNS1m male)
ATGCGCGAACTTGCCCTAACTGGGTTTATGAGCAATCGCGGGAGACAAAA
TGTAGCATCTTTTCTCATTCATGATCTTGAGTTTCCGGATTGGAGAGCGG
GAGCTGAATACTTTGAAAGCATTCTCATCGATCACGATGTGGCTTCAAAC
TGGGGCAACTGGGCGTATCTTGCTGGGGTTGGCAGTGATCCTCGTGGGGG
TCGGAAGTTTAACGTTATAAAGCAAAGTATACAATACGACCCAAATGGAT
GGTTCATTCAACGATGGTGTCCTGAACTTGTCGACTTGCCCCCACCGATG
ATTCATGAACCACATAAATTGTCTGCCGAGGCGCTCAAGGGTGTGGATAT
AATCTGA
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Coding sequence (CDS) from alignment at tig00000935_pilon:241215..241571-

>Ggra5785.t1 ID=Ggra5785.t1|Name=Ggra5785.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000935_pilon:241215..241571- (Gracilaria gracilis GNS1m male)
ATGCGCGAACTTGCCCTAACTGGGTTTATGAGCAATCGCGGGAGACAAAA
TGTAGCATCTTTTCTCATTCATGATCTTGAGTTTCCGGATTGGAGAGCGG
GAGCTGAATACTTTGAAAGCATTCTCATCGATCACGATGTGGCTTCAAAC
TGGGGCAACTGGGCGTATCTTGCTGGGGTTGGCAGTGATCCTCGTGGGGG
TCGGAAGTTTAACGTTATAAAGCAAAGTATACAATACGACCCAAATGGAT
GGTTCATTCAACGATGGTGTCCTGAACTTGTCGACTTGCCCCCACCGATG
ATTCATGAACCACATAAATTGTCTGCCGAGGCGCTCAAGGGTGTGGATAT
AATCTGA
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