Ggra5784.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5784.t1
Unique Name	Ggra5784.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	742

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:237925..240208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5784	Ggra5784	Gracilaria gracilis GNS1m male	gene	tig00000935_pilon 237925..240208 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1	Ggra5784.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000935_pilon 237925..240208 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1.start1	Ggra5784.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000935_pilon 237925..237927 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1.CDS1	Ggra5784.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000935_pilon 237925..239602 +
Ggra5784.t1.CDS2	Ggra5784.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000935_pilon 239661..240208 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1.exon1	Ggra5784.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000935_pilon 237925..239602 +
Ggra5784.t1.exon2	Ggra5784.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000935_pilon 239661..240208 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1.intron1	Ggra5784.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000935_pilon 239603..239660 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5784.t1.stop1	Ggra5784.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000935_pilon 240206..240208 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000935_pilon:237925..240208+
coding sequence from alignment at tig00000935_pilon:237925..240208+

mRNA sequence

>Ggra5784.t1 ID=Ggra5784.t1|Name=Ggra5784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=742bp
MIVHVAYVLLLLQQVVRVFGDTGSPLYDVDKSGTVAVLVAVATLGRHDSY
EVQRPFCTNGRTPIIYTTVAPYVSWIRRTMGNATLSEFFIPPTGINNVVL
ATPKSSLPVAARASIIAVCTLVLAGLLGTLTFLCIVRRMRARRRRWRTGL
QAEDSFINSRAPDLIMADPFEGIQRERQSTMSLSQLSSNAIARLKRAKEY
STRSLAAIRARIIKEEEPLELPREAIPDAPEWVSSAWDKLFQPPSKSDLS
SIHKIPTQRVVDDVLSGADKSVEPSLQEVAFQAAREEANLEAAWHRLEMQ
TSLRSMSEAASANLSPPLSPLPQSPQSGSRGMFASLSRSGSKRGSASSSP
LRRALSSSRPPPGELAKADTLLAAFAPIDNESEHVEETVVDSAALRALAT
AKRPNVVNALRRMFSGPGMREPTSYSDGQSSGPSSSSRQGISSRQAGSSS
GEMLESSFTLSSKHSLARMDYFSENYSVSDSGSEGDGKELFERAFMAGNR
RYTDDRRSEFEETWSIPALRGYRKGPSLSLDELERRRSSHINEAGAVDAP
GKNKSLAIERRLMEVLNYESSSQVQDLWPGYRNDVSGMSDIAVQDADSAS
AVRTEQLSHFIVPSTSYESQTDSGIGSYLHTTELESVRFEGNEKDESSAP
LFGKNQTDHQEPPDSSASRDRSNRDEDSFQKTSSAMKAKFSPARFVSSTE
EANDNHVPHIVNSVHSSSPTQKFLSSDPPPVMFELLVELRI*

spliced messenger RNA

>Ggra5784.t1 ID=Ggra5784.t1|Name=Ggra5784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2226bp|location=Sequence derived from alignment at tig00000935_pilon:237925..240208+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTGCACGTCGCATATGTACTGCTTCTTCTGCAACAAGTGGTCCG
TGTTTTTGGTGACACAGGTAGCCCACTCTATGACGTGGATAAATCTGGCA
CAGTCGCCGTTCTAGTCGCCGTCGCTACGCTTGGTCGGCACGATTCTTAC
GAAGTTCAGAGACCCTTTTGCACAAATGGAAGGACCCCTATCATCTACAC
GACTGTTGCACCGTACGTTTCATGGATTCGTAGAACCATGGGTAACGCAA
CACTTTCCGAGTTTTTCATTCCTCCTACTGGTATCAACAACGTTGTGCTA
GCAACCCCAAAAAGTTCGCTCCCCGTGGCTGCCCGCGCTTCTATTATTGC
TGTATGTACTCTTGTGCTTGCTGGTTTGCTCGGAACCCTCACTTTCCTCT
GTATCGTGCGCCGCATGCGAGCGCGTCGACGTCGTTGGAGAACTGGTCTT
CAAGCCGAGGATTCTTTCATTAACTCTCGGGCTCCAGATCTAATCATGGC
TGACCCTTTTGAGGGTATTCAGCGTGAAAGGCAATCAACGATGTCGCTTT
CTCAACTATCTTCCAATGCAATCGCACGTTTAAAGCGTGCAAAAGAATAC
TCCACGCGTTCCCTAGCCGCCATACGTGCAAGAATCATCAAAGAAGAAGA
ACCACTTGAGTTGCCTCGTGAAGCGATTCCAGACGCTCCCGAATGGGTAA
GTTCGGCCTGGGATAAGCTTTTTCAGCCGCCTTCTAAGTCAGACCTATCC
TCAATCCACAAAATTCCAACACAACGCGTTGTGGATGATGTGCTTTCAGG
TGCCGATAAAAGCGTTGAACCAAGTCTGCAAGAAGTGGCATTTCAAGCTG
CGAGAGAAGAGGCGAACCTTGAAGCTGCATGGCACCGTCTCGAAATGCAA
ACTAGCCTCCGCAGCATGTCTGAGGCTGCATCCGCTAACCTTTCGCCACC
TTTATCGCCACTGCCTCAGTCCCCTCAAAGCGGTTCTCGTGGCATGTTCG
CTAGTCTTTCACGTTCTGGGTCCAAAAGAGGTTCAGCATCCTCATCACCA
TTGCGGCGCGCTCTGTCTTCCTCTCGGCCACCTCCTGGAGAGCTGGCAAA
GGCTGACACATTGCTCGCGGCGTTTGCTCCTATCGACAATGAATCTGAAC
ACGTTGAAGAAACTGTCGTTGACTCTGCCGCTTTGCGTGCACTTGCCACT
GCAAAACGCCCAAATGTCGTGAACGCCTTGCGAAGAATGTTTAGTGGCCC
CGGAATGAGAGAACCCACTTCTTATAGCGATGGGCAGTCCAGTGGCCCCT
CAAGTAGCAGTCGTCAGGGTATTAGTTCACGTCAAGCTGGTTCTAGCAGC
GGTGAAATGCTAGAGAGTTCCTTCACGTTATCTAGCAAGCATAGTTTGGC
ACGAATGGATTACTTCTCAGAAAACTACAGTGTCTCGGATTCTGGATCGG
AGGGGGATGGAAAAGAATTGTTCGAACGAGCGTTTATGGCTGGTAACCGA
CGGTACACAGATGACAGGCGTTCGGAGTTCGAGGAAACATGGTCGATACC
TGCTCTCAGGGGGTATCGAAAAGGGCCTTCTCTCTCACTTGATGAACTGG
AAAGACGTCGGTCCAGTCACATAAACGAAGCAGGTGCAGTTGATGCTCCC
GGAAAAAACAAATCGCTGGCCATAGAGAGGCGACTCATGGAAGTGCTGAA
TTATGAGTCATCATCTCAAGTGCAGGACCTTTGGCCTGGGTATCGAAATG
ACGTATCCGGAATGTCAGATATTGCGGTGCAAGATGCAGACTCTGCTTCT
GCAGTTCGTACTGAGCAATTGTCGCACTTCATAGTTCCTTCAACATCTTA
CGAATCACAGACCGATTCTGGCATAGGAAGTTATCTCCATACCACGGAAT
TAGAAAGTGTTCGATTCGAGGGCAACGAGAAGGACGAGAGCTCTGCACCC
CTTTTCGGTAAGAACCAGACAGACCATCAAGAACCCCCCGATTCAAGCGC
TTCGCGAGATCGATCGAATCGAGATGAAGATTCTTTCCAGAAGACGTCAT
CAGCAATGAAAGCCAAGTTTTCACCTGCAAGATTTGTTTCTAGCACAGAA
GAAGCTAATGATAACCATGTGCCACATATTGTGAATTCGGTGCATAGTTC
ATCACCGACACAAAAGTTCCTGTCGAGTGACCCTCCTCCGGTCATGTTTG
AACTGTTGGTAGAACTGAGGATATGA

protein sequence of Ggra5784.t1

>Ggra5784.t1 ID=Ggra5784.t1|Name=Ggra5784.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=742bp
MIVHVAYVLLLLQQVVRVFGDTGSPLYDVDKSGTVAVLVAVATLGRHDSY
EVQRPFCTNGRTPIIYTTVAPYVSWIRRTMGNATLSEFFIPPTGINNVVL
ATPKSSLPVAARASIIAVCTLVLAGLLGTLTFLCIVRRMRARRRRWRTGL
QAEDSFINSRAPDLIMADPFEGIQRERQSTMSLSQLSSNAIARLKRAKEY
STRSLAAIRARIIKEEEPLELPREAIPDAPEWVSSAWDKLFQPPSKSDLS
SIHKIPTQRVVDDVLSGADKSVEPSLQEVAFQAAREEANLEAAWHRLEMQ
TSLRSMSEAASANLSPPLSPLPQSPQSGSRGMFASLSRSGSKRGSASSSP
LRRALSSSRPPPGELAKADTLLAAFAPIDNESEHVEETVVDSAALRALAT
AKRPNVVNALRRMFSGPGMREPTSYSDGQSSGPSSSSRQGISSRQAGSSS
GEMLESSFTLSSKHSLARMDYFSENYSVSDSGSEGDGKELFERAFMAGNR
RYTDDRRSEFEETWSIPALRGYRKGPSLSLDELERRRSSHINEAGAVDAP
GKNKSLAIERRLMEVLNYESSSQVQDLWPGYRNDVSGMSDIAVQDADSAS
AVRTEQLSHFIVPSTSYESQTDSGIGSYLHTTELESVRFEGNEKDESSAP
LFGKNQTDHQEPPDSSASRDRSNRDEDSFQKTSSAMKAKFSPARFVSSTE
EANDNHVPHIVNSVHSSSPTQKFLSSDPPPVMFELLVELRI*

mRNA from alignment at tig00000935_pilon:237925..240208+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5784.t1 ID=Ggra5784.t1|Name=Ggra5784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2284bp|location=Sequence derived from alignment at tig00000935_pilon:237925..240208+ (Gracilaria gracilis GNS1m male)
ATGATCGTGCACGTCGCATATGTACTGCTTCTTCTGCAACAAGTGGTCCG
TGTTTTTGGTGACACAGGTAGCCCACTCTATGACGTGGATAAATCTGGCA
CAGTCGCCGTTCTAGTCGCCGTCGCTACGCTTGGTCGGCACGATTCTTAC
GAAGTTCAGAGACCCTTTTGCACAAATGGAAGGACCCCTATCATCTACAC
GACTGTTGCACCGTACGTTTCATGGATTCGTAGAACCATGGGTAACGCAA
CACTTTCCGAGTTTTTCATTCCTCCTACTGGTATCAACAACGTTGTGCTA
GCAACCCCAAAAAGTTCGCTCCCCGTGGCTGCCCGCGCTTCTATTATTGC
TGTATGTACTCTTGTGCTTGCTGGTTTGCTCGGAACCCTCACTTTCCTCT
GTATCGTGCGCCGCATGCGAGCGCGTCGACGTCGTTGGAGAACTGGTCTT
CAAGCCGAGGATTCTTTCATTAACTCTCGGGCTCCAGATCTAATCATGGC
TGACCCTTTTGAGGGTATTCAGCGTGAAAGGCAATCAACGATGTCGCTTT
CTCAACTATCTTCCAATGCAATCGCACGTTTAAAGCGTGCAAAAGAATAC
TCCACGCGTTCCCTAGCCGCCATACGTGCAAGAATCATCAAAGAAGAAGA
ACCACTTGAGTTGCCTCGTGAAGCGATTCCAGACGCTCCCGAATGGGTAA
GTTCGGCCTGGGATAAGCTTTTTCAGCCGCCTTCTAAGTCAGACCTATCC
TCAATCCACAAAATTCCAACACAACGCGTTGTGGATGATGTGCTTTCAGG
TGCCGATAAAAGCGTTGAACCAAGTCTGCAAGAAGTGGCATTTCAAGCTG
CGAGAGAAGAGGCGAACCTTGAAGCTGCATGGCACCGTCTCGAAATGCAA
ACTAGCCTCCGCAGCATGTCTGAGGCTGCATCCGCTAACCTTTCGCCACC
TTTATCGCCACTGCCTCAGTCCCCTCAAAGCGGTTCTCGTGGCATGTTCG
CTAGTCTTTCACGTTCTGGGTCCAAAAGAGGTTCAGCATCCTCATCACCA
TTGCGGCGCGCTCTGTCTTCCTCTCGGCCACCTCCTGGAGAGCTGGCAAA
GGCTGACACATTGCTCGCGGCGTTTGCTCCTATCGACAATGAATCTGAAC
ACGTTGAAGAAACTGTCGTTGACTCTGCCGCTTTGCGTGCACTTGCCACT
GCAAAACGCCCAAATGTCGTGAACGCCTTGCGAAGAATGTTTAGTGGCCC
CGGAATGAGAGAACCCACTTCTTATAGCGATGGGCAGTCCAGTGGCCCCT
CAAGTAGCAGTCGTCAGGGTATTAGTTCACGTCAAGCTGGTTCTAGCAGC
GGTGAAATGCTAGAGAGTTCCTTCACGTTATCTAGCAAGCATAGTTTGGC
ACGAATGGATTACTTCTCAGAAAACTACAGTGTCTCGGATTCTGGATCGG
AGGGGGATGGAAAAGAATTGTTCGAACGAGCGTTTATGGCTGGTAACCGA
CGGTACACAGATGACAGGCGTTCGGAGTTCGAGGAAACATGGTCGATACC
TGCTCTCAGGGGGTATCGAAAAGGGCCTTCTCTCTCACTTGATGAACTGG
AAAGACGTCGGTCCAGTCACATAAACGAAGCAGGTGCAGTTGATGCTCCC
GGAAAAAACAAATCGCTGGCCATAGAGAGTGAGCGATACTTCAGTAATGT
TTCGCCAGCTTTAACGCTGACCTCGAGCCCTACTAGGGCGACTCATGGAA
GTGCTGAATTATGAGTCATCATCTCAAGTGCAGGACCTTTGGCCTGGGTA
TCGAAATGACGTATCCGGAATGTCAGATATTGCGGTGCAAGATGCAGACT
CTGCTTCTGCAGTTCGTACTGAGCAATTGTCGCACTTCATAGTTCCTTCA
ACATCTTACGAATCACAGACCGATTCTGGCATAGGAAGTTATCTCCATAC
CACGGAATTAGAAAGTGTTCGATTCGAGGGCAACGAGAAGGACGAGAGCT
CTGCACCCCTTTTCGGTAAGAACCAGACAGACCATCAAGAACCCCCCGAT
TCAAGCGCTTCGCGAGATCGATCGAATCGAGATGAAGATTCTTTCCAGAA
GACGTCATCAGCAATGAAAGCCAAGTTTTCACCTGCAAGATTTGTTTCTA
GCACAGAAGAAGCTAATGATAACCATGTGCCACATATTGTGAATTCGGTG
CATAGTTCATCACCGACACAAAAGTTCCTGTCGAGTGACCCTCCTCCGGT
CATGTTTGAACTGTTGGTAGAACTGAGGATATGA

Coding sequence (CDS) from alignment at tig00000935_pilon:237925..240208+

>Ggra5784.t1 ID=Ggra5784.t1|Name=Ggra5784.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2226bp|location=Sequence derived from alignment at tig00000935_pilon:237925..240208+ (Gracilaria gracilis GNS1m male)
ATGATCGTGCACGTCGCATATGTACTGCTTCTTCTGCAACAAGTGGTCCG
TGTTTTTGGTGACACAGGTAGCCCACTCTATGACGTGGATAAATCTGGCA
CAGTCGCCGTTCTAGTCGCCGTCGCTACGCTTGGTCGGCACGATTCTTAC
GAAGTTCAGAGACCCTTTTGCACAAATGGAAGGACCCCTATCATCTACAC
GACTGTTGCACCGTACGTTTCATGGATTCGTAGAACCATGGGTAACGCAA
CACTTTCCGAGTTTTTCATTCCTCCTACTGGTATCAACAACGTTGTGCTA
GCAACCCCAAAAAGTTCGCTCCCCGTGGCTGCCCGCGCTTCTATTATTGC
TGTATGTACTCTTGTGCTTGCTGGTTTGCTCGGAACCCTCACTTTCCTCT
GTATCGTGCGCCGCATGCGAGCGCGTCGACGTCGTTGGAGAACTGGTCTT
CAAGCCGAGGATTCTTTCATTAACTCTCGGGCTCCAGATCTAATCATGGC
TGACCCTTTTGAGGGTATTCAGCGTGAAAGGCAATCAACGATGTCGCTTT
CTCAACTATCTTCCAATGCAATCGCACGTTTAAAGCGTGCAAAAGAATAC
TCCACGCGTTCCCTAGCCGCCATACGTGCAAGAATCATCAAAGAAGAAGA
ACCACTTGAGTTGCCTCGTGAAGCGATTCCAGACGCTCCCGAATGGGTAA
GTTCGGCCTGGGATAAGCTTTTTCAGCCGCCTTCTAAGTCAGACCTATCC
TCAATCCACAAAATTCCAACACAACGCGTTGTGGATGATGTGCTTTCAGG
TGCCGATAAAAGCGTTGAACCAAGTCTGCAAGAAGTGGCATTTCAAGCTG
CGAGAGAAGAGGCGAACCTTGAAGCTGCATGGCACCGTCTCGAAATGCAA
ACTAGCCTCCGCAGCATGTCTGAGGCTGCATCCGCTAACCTTTCGCCACC
TTTATCGCCACTGCCTCAGTCCCCTCAAAGCGGTTCTCGTGGCATGTTCG
CTAGTCTTTCACGTTCTGGGTCCAAAAGAGGTTCAGCATCCTCATCACCA
TTGCGGCGCGCTCTGTCTTCCTCTCGGCCACCTCCTGGAGAGCTGGCAAA
GGCTGACACATTGCTCGCGGCGTTTGCTCCTATCGACAATGAATCTGAAC
ACGTTGAAGAAACTGTCGTTGACTCTGCCGCTTTGCGTGCACTTGCCACT
GCAAAACGCCCAAATGTCGTGAACGCCTTGCGAAGAATGTTTAGTGGCCC
CGGAATGAGAGAACCCACTTCTTATAGCGATGGGCAGTCCAGTGGCCCCT
CAAGTAGCAGTCGTCAGGGTATTAGTTCACGTCAAGCTGGTTCTAGCAGC
GGTGAAATGCTAGAGAGTTCCTTCACGTTATCTAGCAAGCATAGTTTGGC
ACGAATGGATTACTTCTCAGAAAACTACAGTGTCTCGGATTCTGGATCGG
AGGGGGATGGAAAAGAATTGTTCGAACGAGCGTTTATGGCTGGTAACCGA
CGGTACACAGATGACAGGCGTTCGGAGTTCGAGGAAACATGGTCGATACC
TGCTCTCAGGGGGTATCGAAAAGGGCCTTCTCTCTCACTTGATGAACTGG
AAAGACGTCGGTCCAGTCACATAAACGAAGCAGGTGCAGTTGATGCTCCC
GGAAAAAACAAATCGCTGGCCATAGAGAGGCGACTCATGGAAGTGCTGAA
TTATGAGTCATCATCTCAAGTGCAGGACCTTTGGCCTGGGTATCGAAATG
ACGTATCCGGAATGTCAGATATTGCGGTGCAAGATGCAGACTCTGCTTCT
GCAGTTCGTACTGAGCAATTGTCGCACTTCATAGTTCCTTCAACATCTTA
CGAATCACAGACCGATTCTGGCATAGGAAGTTATCTCCATACCACGGAAT
TAGAAAGTGTTCGATTCGAGGGCAACGAGAAGGACGAGAGCTCTGCACCC
CTTTTCGGTAAGAACCAGACAGACCATCAAGAACCCCCCGATTCAAGCGC
TTCGCGAGATCGATCGAATCGAGATGAAGATTCTTTCCAGAAGACGTCAT
CAGCAATGAAAGCCAAGTTTTCACCTGCAAGATTTGTTTCTAGCACAGAA
GAAGCTAATGATAACCATGTGCCACATATTGTGAATTCGGTGCATAGTTC
ATCACCGACACAAAAGTTCCTGTCGAGTGACCCTCCTCCGGTCATGTTTG
AACTGTTGGTAGAACTGAGGATATGA