Ggra5779.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5779.t1
Unique NameGgra5779.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:217271..218089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5779Ggra5779Gracilaria gracilis GNS1m malegenetig00000935_pilon 217271..218089 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5779.t1.stop1Ggra5779.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 217271..217273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5779.t1.CDS1Ggra5779.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 217271..218089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5779.t1.exon1Ggra5779.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 217271..218089 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5779.t1.start1Ggra5779.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 218087..218089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5779.t1Ggra5779.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 217271..218089 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5779.t1 ID=Ggra5779.t1|Name=Ggra5779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
LGERYFAFAAEKGHFFASHEVHDAVFIHEPTSGAHTYRSDYYSQQYGTGF
AAGTTDRQQTQQQEQSHSSRGCVPPPSDAGSGTSSTDSAAQTPPPHRTDP
DPAARVHRGDDAATSLSGSLDLQVYEVYNSMSSMLKGLGDQNAQETKLRL
EGVRDITAQLIREMEKQKTDMSQLVSVLKHLKTTAGDLSYASDRFSSQLQ
GLHNSLRTLREKTHGISDSHDELHEELIDHHEGITEQSSGGSGTLVMFLL
IQALLGGDIVGTSKHTILTSRN*
back to top

spliced messenger RNA

>Ggra5779.t1 ID=Ggra5779.t1|Name=Ggra5779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000935_pilon:217271..218089- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGGTGAAAGATACTTTGCGTTCGCTGCTGAGAAGGGCCATTTCTTTGC
CAGTCATGAGGTACATGACGCCGTGTTCATTCATGAGCCCACTTCGGGTG
CACACACTTATCGATCTGACTATTATTCGCAACAGTACGGCACTGGCTTT
GCTGCTGGTACTACGGACCGACAACAAACACAACAACAGGAGCAGAGCCA
TAGCTCACGCGGATGCGTGCCACCACCTTCTGATGCTGGCTCGGGTACTT
CTAGCACCGACAGTGCCGCACAGACTCCGCCTCCACATCGCACCGATCCG
GACCCAGCCGCGCGCGTGCACCGTGGAGATGATGCCGCTACGTCGTTATC
AGGCTCTTTAGATCTGCAAGTGTACGAGGTATACAACTCCATGTCGTCCA
TGCTCAAGGGGCTCGGCGACCAGAACGCACAAGAAACAAAGCTTCGACTA
GAGGGGGTACGCGATATTACTGCGCAACTTATTCGCGAGATGGAAAAACA
AAAGACCGATATGTCGCAGTTGGTGTCCGTGTTGAAACATCTTAAGACTA
CTGCGGGCGATTTGTCGTATGCTTCAGATCGCTTTTCTAGCCAGTTGCAA
GGCCTTCATAACTCTTTACGTACCCTTAGGGAGAAGACGCACGGCATTTC
TGATTCGCATGATGAGCTGCATGAGGAGCTGATCGATCATCATGAGGGCA
TTACGGAGCAGTCTTCTGGCGGCAGTGGTACCCTTGTTATGTTCCTGCTT
ATTCAAGCACTTTTGGGAGGCGACATCGTTGGAACGTCGAAGCACACTAT
TCTAACAAGCCGTAACTGA
back to top

protein sequence of Ggra5779.t1

>Ggra5779.t1 ID=Ggra5779.t1|Name=Ggra5779.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
LGERYFAFAAEKGHFFASHEVHDAVFIHEPTSGAHTYRSDYYSQQYGTGF
AAGTTDRQQTQQQEQSHSSRGCVPPPSDAGSGTSSTDSAAQTPPPHRTDP
DPAARVHRGDDAATSLSGSLDLQVYEVYNSMSSMLKGLGDQNAQETKLRL
EGVRDITAQLIREMEKQKTDMSQLVSVLKHLKTTAGDLSYASDRFSSQLQ
GLHNSLRTLREKTHGISDSHDELHEELIDHHEGITEQSSGGSGTLVMFLL
IQALLGGDIVGTSKHTILTSRN*
back to top

mRNA from alignment at tig00000935_pilon:217271..218089-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5779.t1 ID=Ggra5779.t1|Name=Ggra5779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000935_pilon:217271..218089- (Gracilaria gracilis GNS1m male)
TTGGGTGAAAGATACTTTGCGTTCGCTGCTGAGAAGGGCCATTTCTTTGC
CAGTCATGAGGTACATGACGCCGTGTTCATTCATGAGCCCACTTCGGGTG
CACACACTTATCGATCTGACTATTATTCGCAACAGTACGGCACTGGCTTT
GCTGCTGGTACTACGGACCGACAACAAACACAACAACAGGAGCAGAGCCA
TAGCTCACGCGGATGCGTGCCACCACCTTCTGATGCTGGCTCGGGTACTT
CTAGCACCGACAGTGCCGCACAGACTCCGCCTCCACATCGCACCGATCCG
GACCCAGCCGCGCGCGTGCACCGTGGAGATGATGCCGCTACGTCGTTATC
AGGCTCTTTAGATCTGCAAGTGTACGAGGTATACAACTCCATGTCGTCCA
TGCTCAAGGGGCTCGGCGACCAGAACGCACAAGAAACAAAGCTTCGACTA
GAGGGGGTACGCGATATTACTGCGCAACTTATTCGCGAGATGGAAAAACA
AAAGACCGATATGTCGCAGTTGGTGTCCGTGTTGAAACATCTTAAGACTA
CTGCGGGCGATTTGTCGTATGCTTCAGATCGCTTTTCTAGCCAGTTGCAA
GGCCTTCATAACTCTTTACGTACCCTTAGGGAGAAGACGCACGGCATTTC
TGATTCGCATGATGAGCTGCATGAGGAGCTGATCGATCATCATGAGGGCA
TTACGGAGCAGTCTTCTGGCGGCAGTGGTACCCTTGTTATGTTCCTGCTT
ATTCAAGCACTTTTGGGAGGCGACATCGTTGGAACGTCGAAGCACACTAT
TCTAACAAGCCGTAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000935_pilon:217271..218089-

>Ggra5779.t1 ID=Ggra5779.t1|Name=Ggra5779.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000935_pilon:217271..218089- (Gracilaria gracilis GNS1m male)
TTGGGTGAAAGATACTTTGCGTTCGCTGCTGAGAAGGGCCATTTCTTTGC
CAGTCATGAGGTACATGACGCCGTGTTCATTCATGAGCCCACTTCGGGTG
CACACACTTATCGATCTGACTATTATTCGCAACAGTACGGCACTGGCTTT
GCTGCTGGTACTACGGACCGACAACAAACACAACAACAGGAGCAGAGCCA
TAGCTCACGCGGATGCGTGCCACCACCTTCTGATGCTGGCTCGGGTACTT
CTAGCACCGACAGTGCCGCACAGACTCCGCCTCCACATCGCACCGATCCG
GACCCAGCCGCGCGCGTGCACCGTGGAGATGATGCCGCTACGTCGTTATC
AGGCTCTTTAGATCTGCAAGTGTACGAGGTATACAACTCCATGTCGTCCA
TGCTCAAGGGGCTCGGCGACCAGAACGCACAAGAAACAAAGCTTCGACTA
GAGGGGGTACGCGATATTACTGCGCAACTTATTCGCGAGATGGAAAAACA
AAAGACCGATATGTCGCAGTTGGTGTCCGTGTTGAAACATCTTAAGACTA
CTGCGGGCGATTTGTCGTATGCTTCAGATCGCTTTTCTAGCCAGTTGCAA
GGCCTTCATAACTCTTTACGTACCCTTAGGGAGAAGACGCACGGCATTTC
TGATTCGCATGATGAGCTGCATGAGGAGCTGATCGATCATCATGAGGGCA
TTACGGAGCAGTCTTCTGGCGGCAGTGGTACCCTTGTTATGTTCCTGCTT
ATTCAAGCACTTTTGGGAGGCGACATCGTTGGAACGTCGAAGCACACTAT
TCTAACAAGCCGTAACTGA
back to top