Ggra5752.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5752.t1
Unique Name	Ggra5752.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	523

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000897_pilon	contig	tig00000897_pilon:647213..648781 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5752	Ggra5752	Gracilaria gracilis GNS1m male	gene	tig00000897_pilon 647213..648781 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5752.t1.stop1	Ggra5752.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000897_pilon 647213..647215 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5752.t1.CDS1	Ggra5752.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000897_pilon 647213..648781 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5752.t1.exon1	Ggra5752.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000897_pilon 647213..648781 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5752.t1.start1	Ggra5752.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000897_pilon 648779..648781 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5752.t1	Ggra5752.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000897_pilon 647213..648781 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000897_pilon:647213..648781-
coding sequence from alignment at tig00000897_pilon:647213..648781-

mRNA sequence

>Ggra5752.t1 ID=Ggra5752.t1|Name=Ggra5752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=523bp
MDPLRNRSLQLPSSSPTPSLICVGGMLRVAETPASNAVVSESLASHSSVQ
PPNLLHHNGNTPCRTPTVTPFKALASPFTVTTPFTAPSTPYSHSTVTPIP
LRLSPTQTPTSLQGNSSVASKPPVNPTNFNRVKTFQKESQTPVNHLLTPK
QVRELRRLCRKTANRAEFEDRLIQIRQVASIAAMASSSLHLFDPENPRSG
LALRVWVETHRAEGADWRDERPLSDSAVDELRRWDRLLKGWARVRFETSN
PGESDVPPHTYAGSGSNIVETVLHPIRLQFEQLSVGTSPITPLVRVKHAE
TGETRAVEHHSIAQLTSPTTPDEQGASFWRSPHVDVGGVGGGMRNSQSLG
DVHGTISGRNAMHVVQSAWSKVSPSVMRDCVGERKPLEEVSINKVGDLIN
VTVPAMTRQQSSAPLRSLAKSSSCGMNASVVYGEENLLDIGQMKSWRNVV
LDSTKYGSRVDDISIGAKHLHSYGENVDNAYGDGCANIHNLTPSTRADLD
WGRLRGGEGSESSFSSLNGNKL*

spliced messenger RNA

>Ggra5752.t1 ID=Ggra5752.t1|Name=Ggra5752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000897_pilon:647213..648781- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCGCTACGAAACAGATCACTTCAACTCCCATCATCATCGCCGAC
TCCCTCTCTTATTTGTGTGGGCGGCATGCTTCGCGTGGCGGAAACCCCAG
CTTCGAATGCTGTCGTATCCGAGTCTCTGGCATCTCATTCGAGTGTGCAA
CCCCCTAACCTTCTACATCATAATGGAAATACCCCGTGTCGCACTCCAAC
TGTTACTCCCTTTAAGGCATTGGCTTCTCCATTCACCGTCACCACCCCGT
TTACAGCACCAAGTACACCGTACTCGCACTCTACAGTAACACCAATCCCA
CTCCGATTGTCTCCAACACAAACTCCTACCAGTTTGCAAGGGAACAGTTC
GGTAGCATCCAAGCCTCCGGTCAACCCTACTAATTTCAACCGCGTGAAGA
CGTTTCAGAAAGAGTCTCAAACGCCAGTGAATCATCTGTTAACCCCGAAG
CAGGTACGAGAGCTTCGCCGTCTTTGTCGCAAAACAGCCAACCGTGCAGA
GTTTGAAGATCGCCTCATTCAAATCCGCCAGGTTGCCTCCATTGCCGCTA
TGGCTTCTTCCTCACTACATCTCTTCGATCCAGAGAATCCTCGAAGCGGT
CTTGCTCTTCGAGTTTGGGTTGAGACTCACCGCGCCGAGGGTGCGGATTG
GCGTGATGAACGTCCCCTCTCCGATTCTGCAGTAGATGAACTTCGTCGCT
GGGATCGCCTTCTCAAGGGGTGGGCTCGTGTGCGCTTTGAGACGTCTAAC
CCTGGTGAATCAGATGTTCCACCACACACATATGCTGGCTCGGGGTCTAA
TATTGTGGAAACAGTTTTGCATCCCATTCGTTTACAATTTGAACAACTTT
CTGTTGGGACATCGCCGATTACTCCGCTTGTTCGAGTCAAGCATGCTGAA
ACCGGAGAAACAAGGGCAGTAGAACATCACTCAATTGCCCAGCTGACCTC
CCCAACAACTCCAGATGAGCAGGGTGCTTCCTTTTGGCGTTCACCACACG
TAGATGTCGGAGGAGTTGGCGGGGGCATGAGGAATTCGCAGTCACTTGGA
GACGTCCATGGAACAATAAGCGGCCGAAATGCGATGCATGTGGTTCAATC
AGCGTGGAGTAAGGTGTCACCTTCTGTGATGAGAGATTGCGTTGGAGAAA
GGAAGCCACTTGAAGAGGTTAGCATCAACAAAGTTGGTGATCTCATTAAT
GTAACTGTACCGGCGATGACTAGGCAACAATCATCAGCTCCATTGCGAAG
TCTTGCCAAGTCAAGTTCCTGTGGCATGAATGCATCAGTGGTTTATGGTG
AGGAGAACCTTCTCGATATAGGTCAAATGAAATCGTGGAGAAACGTCGTA
TTGGATTCCACTAAGTATGGCAGTCGAGTTGATGATATTAGTATAGGTGC
GAAGCATTTACACAGCTACGGTGAGAATGTAGATAATGCCTACGGGGACG
GTTGTGCAAATATCCACAACCTGACTCCCTCAACCCGAGCAGACCTAGAT
TGGGGTCGGTTGAGAGGGGGAGAAGGCTCAGAATCTAGTTTTTCTTCTCT
TAATGGCAACAAACTTTAG

protein sequence of Ggra5752.t1

>Ggra5752.t1 ID=Ggra5752.t1|Name=Ggra5752.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=523bp
MDPLRNRSLQLPSSSPTPSLICVGGMLRVAETPASNAVVSESLASHSSVQ
PPNLLHHNGNTPCRTPTVTPFKALASPFTVTTPFTAPSTPYSHSTVTPIP
LRLSPTQTPTSLQGNSSVASKPPVNPTNFNRVKTFQKESQTPVNHLLTPK
QVRELRRLCRKTANRAEFEDRLIQIRQVASIAAMASSSLHLFDPENPRSG
LALRVWVETHRAEGADWRDERPLSDSAVDELRRWDRLLKGWARVRFETSN
PGESDVPPHTYAGSGSNIVETVLHPIRLQFEQLSVGTSPITPLVRVKHAE
TGETRAVEHHSIAQLTSPTTPDEQGASFWRSPHVDVGGVGGGMRNSQSLG
DVHGTISGRNAMHVVQSAWSKVSPSVMRDCVGERKPLEEVSINKVGDLIN
VTVPAMTRQQSSAPLRSLAKSSSCGMNASVVYGEENLLDIGQMKSWRNVV
LDSTKYGSRVDDISIGAKHLHSYGENVDNAYGDGCANIHNLTPSTRADLD
WGRLRGGEGSESSFSSLNGNKL*

mRNA from alignment at tig00000897_pilon:647213..648781-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5752.t1 ID=Ggra5752.t1|Name=Ggra5752.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000897_pilon:647213..648781- (Gracilaria gracilis GNS1m male)
ATGGATCCGCTACGAAACAGATCACTTCAACTCCCATCATCATCGCCGAC
TCCCTCTCTTATTTGTGTGGGCGGCATGCTTCGCGTGGCGGAAACCCCAG
CTTCGAATGCTGTCGTATCCGAGTCTCTGGCATCTCATTCGAGTGTGCAA
CCCCCTAACCTTCTACATCATAATGGAAATACCCCGTGTCGCACTCCAAC
TGTTACTCCCTTTAAGGCATTGGCTTCTCCATTCACCGTCACCACCCCGT
TTACAGCACCAAGTACACCGTACTCGCACTCTACAGTAACACCAATCCCA
CTCCGATTGTCTCCAACACAAACTCCTACCAGTTTGCAAGGGAACAGTTC
GGTAGCATCCAAGCCTCCGGTCAACCCTACTAATTTCAACCGCGTGAAGA
CGTTTCAGAAAGAGTCTCAAACGCCAGTGAATCATCTGTTAACCCCGAAG
CAGGTACGAGAGCTTCGCCGTCTTTGTCGCAAAACAGCCAACCGTGCAGA
GTTTGAAGATCGCCTCATTCAAATCCGCCAGGTTGCCTCCATTGCCGCTA
TGGCTTCTTCCTCACTACATCTCTTCGATCCAGAGAATCCTCGAAGCGGT
CTTGCTCTTCGAGTTTGGGTTGAGACTCACCGCGCCGAGGGTGCGGATTG
GCGTGATGAACGTCCCCTCTCCGATTCTGCAGTAGATGAACTTCGTCGCT
GGGATCGCCTTCTCAAGGGGTGGGCTCGTGTGCGCTTTGAGACGTCTAAC
CCTGGTGAATCAGATGTTCCACCACACACATATGCTGGCTCGGGGTCTAA
TATTGTGGAAACAGTTTTGCATCCCATTCGTTTACAATTTGAACAACTTT
CTGTTGGGACATCGCCGATTACTCCGCTTGTTCGAGTCAAGCATGCTGAA
ACCGGAGAAACAAGGGCAGTAGAACATCACTCAATTGCCCAGCTGACCTC
CCCAACAACTCCAGATGAGCAGGGTGCTTCCTTTTGGCGTTCACCACACG
TAGATGTCGGAGGAGTTGGCGGGGGCATGAGGAATTCGCAGTCACTTGGA
GACGTCCATGGAACAATAAGCGGCCGAAATGCGATGCATGTGGTTCAATC
AGCGTGGAGTAAGGTGTCACCTTCTGTGATGAGAGATTGCGTTGGAGAAA
GGAAGCCACTTGAAGAGGTTAGCATCAACAAAGTTGGTGATCTCATTAAT
GTAACTGTACCGGCGATGACTAGGCAACAATCATCAGCTCCATTGCGAAG
TCTTGCCAAGTCAAGTTCCTGTGGCATGAATGCATCAGTGGTTTATGGTG
AGGAGAACCTTCTCGATATAGGTCAAATGAAATCGTGGAGAAACGTCGTA
TTGGATTCCACTAAGTATGGCAGTCGAGTTGATGATATTAGTATAGGTGC
GAAGCATTTACACAGCTACGGTGAGAATGTAGATAATGCCTACGGGGACG
GTTGTGCAAATATCCACAACCTGACTCCCTCAACCCGAGCAGACCTAGAT
TGGGGTCGGTTGAGAGGGGGAGAAGGCTCAGAATCTAGTTTTTCTTCTCT
TAATGGCAACAAACTTTAG

Coding sequence (CDS) from alignment at tig00000897_pilon:647213..648781-

>Ggra5752.t1 ID=Ggra5752.t1|Name=Ggra5752.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000897_pilon:647213..648781- (Gracilaria gracilis GNS1m male)
ATGGATCCGCTACGAAACAGATCACTTCAACTCCCATCATCATCGCCGAC
TCCCTCTCTTATTTGTGTGGGCGGCATGCTTCGCGTGGCGGAAACCCCAG
CTTCGAATGCTGTCGTATCCGAGTCTCTGGCATCTCATTCGAGTGTGCAA
CCCCCTAACCTTCTACATCATAATGGAAATACCCCGTGTCGCACTCCAAC
TGTTACTCCCTTTAAGGCATTGGCTTCTCCATTCACCGTCACCACCCCGT
TTACAGCACCAAGTACACCGTACTCGCACTCTACAGTAACACCAATCCCA
CTCCGATTGTCTCCAACACAAACTCCTACCAGTTTGCAAGGGAACAGTTC
GGTAGCATCCAAGCCTCCGGTCAACCCTACTAATTTCAACCGCGTGAAGA
CGTTTCAGAAAGAGTCTCAAACGCCAGTGAATCATCTGTTAACCCCGAAG
CAGGTACGAGAGCTTCGCCGTCTTTGTCGCAAAACAGCCAACCGTGCAGA
GTTTGAAGATCGCCTCATTCAAATCCGCCAGGTTGCCTCCATTGCCGCTA
TGGCTTCTTCCTCACTACATCTCTTCGATCCAGAGAATCCTCGAAGCGGT
CTTGCTCTTCGAGTTTGGGTTGAGACTCACCGCGCCGAGGGTGCGGATTG
GCGTGATGAACGTCCCCTCTCCGATTCTGCAGTAGATGAACTTCGTCGCT
GGGATCGCCTTCTCAAGGGGTGGGCTCGTGTGCGCTTTGAGACGTCTAAC
CCTGGTGAATCAGATGTTCCACCACACACATATGCTGGCTCGGGGTCTAA
TATTGTGGAAACAGTTTTGCATCCCATTCGTTTACAATTTGAACAACTTT
CTGTTGGGACATCGCCGATTACTCCGCTTGTTCGAGTCAAGCATGCTGAA
ACCGGAGAAACAAGGGCAGTAGAACATCACTCAATTGCCCAGCTGACCTC
CCCAACAACTCCAGATGAGCAGGGTGCTTCCTTTTGGCGTTCACCACACG
TAGATGTCGGAGGAGTTGGCGGGGGCATGAGGAATTCGCAGTCACTTGGA
GACGTCCATGGAACAATAAGCGGCCGAAATGCGATGCATGTGGTTCAATC
AGCGTGGAGTAAGGTGTCACCTTCTGTGATGAGAGATTGCGTTGGAGAAA
GGAAGCCACTTGAAGAGGTTAGCATCAACAAAGTTGGTGATCTCATTAAT
GTAACTGTACCGGCGATGACTAGGCAACAATCATCAGCTCCATTGCGAAG
TCTTGCCAAGTCAAGTTCCTGTGGCATGAATGCATCAGTGGTTTATGGTG
AGGAGAACCTTCTCGATATAGGTCAAATGAAATCGTGGAGAAACGTCGTA
TTGGATTCCACTAAGTATGGCAGTCGAGTTGATGATATTAGTATAGGTGC
GAAGCATTTACACAGCTACGGTGAGAATGTAGATAATGCCTACGGGGACG
GTTGTGCAAATATCCACAACCTGACTCCCTCAACCCGAGCAGACCTAGAT
TGGGGTCGGTTGAGAGGGGGAGAAGGCTCAGAATCTAGTTTTTCTTCTCT
TAATGGCAACAAACTTTAG