Ggra5734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5734.t1
Unique NameGgra5734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:306921..307484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_06033T0
PFAMsEF-hand_5,EF-hand_7,Na_Ca_ex
Max annot lvl2759|Eukaryota
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0006950,GO:0006970,GO:0008150,GO:0008324,GO:0009506,GO:0009628,GO:0009651,GO:0009987,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030054,GO:0031090,GO:0033554,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055044,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071214,GO:0071470,GO:0071472,GO:0072507,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0099516,GO:0104004
Evalue2.04e-35
EggNOG OGs28NP9@1|root,2QV8Y@2759|Eukaryota
Descriptioncalcium:sodium antiporter activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5734Ggra5734Gracilaria gracilis GNS1m malegenetig00000897_pilon 306921..307484 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5734.t1.start1Ggra5734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 306921..306923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5734.t1.CDS1Ggra5734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 306921..307484 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5734.t1.exon1Ggra5734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 306921..307484 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5734.t1.stop1Ggra5734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 307482..307484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5734.t1Ggra5734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 306921..307484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5734.t1 ID=Ggra5734.t1|Name=Ggra5734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MLLSVYRFVLFNASKLIADGGGLLLMVQSLKGIVSSVVLPILGAVPDGAN
VLFSGLVENAQEELSVGFEALAGSTSMLLTISWFLSILAGRMNIRPDDVP
HYFGRPELHPSSNMRLDRTEIETQGMVQTAGRTMLITAVSHVVTQATAFL
APNHGMGRENSSQERFITGVPLCYRILVPVCILVDLD*
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spliced messenger RNA

>Ggra5734.t1 ID=Ggra5734.t1|Name=Ggra5734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000897_pilon:306921..307484+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTTTCTGTTTATCGATTTGTTCTATTCAATGCCTCCAAATTAAT
TGCGGACGGTGGCGGATTGCTATTGATGGTACAGTCACTGAAAGGAATTG
TCAGTTCAGTTGTGCTTCCAATTCTAGGCGCTGTGCCAGATGGTGCTAAC
GTACTGTTTTCAGGATTGGTAGAAAATGCACAGGAAGAGCTTTCCGTCGG
TTTTGAAGCTCTCGCCGGCTCCACGAGCATGCTGCTGACAATTTCGTGGT
TCCTATCGATTCTTGCTGGTCGTATGAACATCCGACCTGACGACGTTCCG
CACTATTTTGGTCGACCGGAGCTCCACCCGTCAAGCAATATGCGTCTAGA
TCGAACTGAAATTGAGACTCAAGGAATGGTTCAGACAGCAGGGCGTACCA
TGCTGATTACCGCAGTGTCGCACGTTGTCACTCAAGCAACAGCGTTTTTG
GCTCCAAACCATGGAATGGGACGCGAGAATAGTTCTCAAGAGAGATTCAT
TACCGGTGTCCCTCTCTGCTATCGAATCCTTGTCCCAGTCTGCATTCTAG
TAGATCTAGATTAG
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protein sequence of Ggra5734.t1

>Ggra5734.t1 ID=Ggra5734.t1|Name=Ggra5734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MLLSVYRFVLFNASKLIADGGGLLLMVQSLKGIVSSVVLPILGAVPDGAN
VLFSGLVENAQEELSVGFEALAGSTSMLLTISWFLSILAGRMNIRPDDVP
HYFGRPELHPSSNMRLDRTEIETQGMVQTAGRTMLITAVSHVVTQATAFL
APNHGMGRENSSQERFITGVPLCYRILVPVCILVDLD*
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mRNA from alignment at tig00000897_pilon:306921..307484+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5734.t1 ID=Ggra5734.t1|Name=Ggra5734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000897_pilon:306921..307484+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTTCTGTTTATCGATTTGTTCTATTCAATGCCTCCAAATTAAT
TGCGGACGGTGGCGGATTGCTATTGATGGTACAGTCACTGAAAGGAATTG
TCAGTTCAGTTGTGCTTCCAATTCTAGGCGCTGTGCCAGATGGTGCTAAC
GTACTGTTTTCAGGATTGGTAGAAAATGCACAGGAAGAGCTTTCCGTCGG
TTTTGAAGCTCTCGCCGGCTCCACGAGCATGCTGCTGACAATTTCGTGGT
TCCTATCGATTCTTGCTGGTCGTATGAACATCCGACCTGACGACGTTCCG
CACTATTTTGGTCGACCGGAGCTCCACCCGTCAAGCAATATGCGTCTAGA
TCGAACTGAAATTGAGACTCAAGGAATGGTTCAGACAGCAGGGCGTACCA
TGCTGATTACCGCAGTGTCGCACGTTGTCACTCAAGCAACAGCGTTTTTG
GCTCCAAACCATGGAATGGGACGCGAGAATAGTTCTCAAGAGAGATTCAT
TACCGGTGTCCCTCTCTGCTATCGAATCCTTGTCCCAGTCTGCATTCTAG
TAGATCTAGATTAG
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Coding sequence (CDS) from alignment at tig00000897_pilon:306921..307484+

>Ggra5734.t1 ID=Ggra5734.t1|Name=Ggra5734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000897_pilon:306921..307484+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTTCTGTTTATCGATTTGTTCTATTCAATGCCTCCAAATTAAT
TGCGGACGGTGGCGGATTGCTATTGATGGTACAGTCACTGAAAGGAATTG
TCAGTTCAGTTGTGCTTCCAATTCTAGGCGCTGTGCCAGATGGTGCTAAC
GTACTGTTTTCAGGATTGGTAGAAAATGCACAGGAAGAGCTTTCCGTCGG
TTTTGAAGCTCTCGCCGGCTCCACGAGCATGCTGCTGACAATTTCGTGGT
TCCTATCGATTCTTGCTGGTCGTATGAACATCCGACCTGACGACGTTCCG
CACTATTTTGGTCGACCGGAGCTCCACCCGTCAAGCAATATGCGTCTAGA
TCGAACTGAAATTGAGACTCAAGGAATGGTTCAGACAGCAGGGCGTACCA
TGCTGATTACCGCAGTGTCGCACGTTGTCACTCAAGCAACAGCGTTTTTG
GCTCCAAACCATGGAATGGGACGCGAGAATAGTTCTCAAGAGAGATTCAT
TACCGGTGTCCCTCTCTGCTATCGAATCCTTGTCCCAGTCTGCATTCTAG
TAGATCTAGATTAG
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