Ggra5725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5725.t1
Unique NameGgra5725.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:133275..134057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5725Ggra5725Gracilaria gracilis GNS1m malegenetig00000897_pilon 133275..134057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1Ggra5725.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 133275..134057 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1.stop1Ggra5725.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 133275..133277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1.CDS1Ggra5725.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 133275..133643 -
Ggra5725.t1.CDS2Ggra5725.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000897_pilon 133734..134057 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1.exon1Ggra5725.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 133275..133643 -
Ggra5725.t1.exon2Ggra5725.t1.exon2Gracilaria gracilis GNS1m maleexontig00000897_pilon 133734..134057 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1.intron1Ggra5725.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000897_pilon 133644..133733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5725.t1.start1Ggra5725.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 134055..134057 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5725.t1 ID=Ggra5725.t1|Name=Ggra5725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MRASVQNYKSGNAPNTGGQSKAKVMDKMGSAVEKAQQQVLDDEIVSITEV
YEGDEDTASRLELPRGSEPDKNVDFGDDSEEFLDMTGGDNGAEEEYVSCE
DYLDALAEGLAKGFFGAAPKKHARAETKYVPKAVTNGGEVPGTQVAKQPT
ASAVAVVVEKKPSRKSKGRNRRPRSSASAFPPYKLMELLAHDAPDKTQLK
VLNDADADDAESQMSMSLRLRGAGKDAVRS*
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spliced messenger RNA

>Ggra5725.t1 ID=Ggra5725.t1|Name=Ggra5725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000897_pilon:133275..134057- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTTCAGTTCAAAACTACAAAAGCGGCAATGCTCCCAACACTGG
AGGACAGTCGAAGGCGAAGGTGATGGACAAAATGGGGTCAGCTGTTGAGA
AGGCGCAGCAACAAGTACTGGACGATGAAATCGTGAGCATTACTGAAGTT
TACGAAGGAGACGAGGATACTGCGAGTAGACTGGAGCTACCACGCGGCTC
TGAGCCAGACAAGAACGTAGATTTTGGGGATGATAGCGAAGAGTTTCTGG
ATATGACTGGCGGGGACAACGGGGCAGAAGAGGAATACGTTTCTTGCGAG
GATTACCTTGACGCACTTGCTGAAGGCTTGGCAAAGGGCTTCTTCGGCGC
GGCGCCGAAAAAGCACGCACGGGCAGAAACGAAATATGTGCCAAAGGCGG
TGACAAACGGCGGCGAGGTGCCGGGCACACAGGTGGCGAAGCAGCCGACG
GCATCGGCAGTGGCTGTGGTGGTGGAGAAAAAGCCGTCGCGCAAGTCGAA
AGGACGGAATCGTCGGCCTCGCTCAAGCGCTAGCGCGTTTCCGCCGTACA
AGTTGATGGAGCTTCTCGCTCACGACGCGCCGGACAAGACGCAGCTGAAA
GTGCTCAACGATGCGGACGCAGACGACGCAGAGAGCCAAATGTCGATGTC
CCTGCGCCTGCGCGGTGCTGGCAAAGACGCGGTGCGTAGCTAA
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protein sequence of Ggra5725.t1

>Ggra5725.t1 ID=Ggra5725.t1|Name=Ggra5725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MRASVQNYKSGNAPNTGGQSKAKVMDKMGSAVEKAQQQVLDDEIVSITEV
YEGDEDTASRLELPRGSEPDKNVDFGDDSEEFLDMTGGDNGAEEEYVSCE
DYLDALAEGLAKGFFGAAPKKHARAETKYVPKAVTNGGEVPGTQVAKQPT
ASAVAVVVEKKPSRKSKGRNRRPRSSASAFPPYKLMELLAHDAPDKTQLK
VLNDADADDAESQMSMSLRLRGAGKDAVRS*
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mRNA from alignment at tig00000897_pilon:133275..134057-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5725.t1 ID=Ggra5725.t1|Name=Ggra5725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000897_pilon:133275..134057- (Gracilaria gracilis GNS1m male)
ATGCGCGCTTCAGTTCAAAACTACAAAAGCGGCAATGCTCCCAACACTGG
AGGACAGTCGAAGGCGAAGGTGATGGACAAAATGGGGTCAGCTGTTGAGA
AGGCGCAGCAACAAGTACTGGACGATGAAATCGTGAGCATTACTGAAGTT
TACGAAGGAGACGAGGATACTGCGAGTAGACTGGAGCTACCACGCGGCTC
TGAGCCAGACAAGAACGTAGATTTTGGGGATGATAGCGAAGAGTTTCTGG
ATATGACTGGCGGGGACAACGGGGCAGAAGAGGAATACGTTTCTTGCGAG
GATTACCTTGACGCACTTGCTGAAGTAGGAAAACAGTCGGAAGCGGAAGA
AAAACACGTGTAGACTGAAAAGAGAAGAAAGGAACTAAAACGAGGGAAGA
CAGAGTTCGGACAGGGCTTGGCAAAGGGCTTCTTCGGCGCGGCGCCGAAA
AAGCACGCACGGGCAGAAACGAAATATGTGCCAAAGGCGGTGACAAACGG
CGGCGAGGTGCCGGGCACACAGGTGGCGAAGCAGCCGACGGCATCGGCAG
TGGCTGTGGTGGTGGAGAAAAAGCCGTCGCGCAAGTCGAAAGGACGGAAT
CGTCGGCCTCGCTCAAGCGCTAGCGCGTTTCCGCCGTACAAGTTGATGGA
GCTTCTCGCTCACGACGCGCCGGACAAGACGCAGCTGAAAGTGCTCAACG
ATGCGGACGCAGACGACGCAGAGAGCCAAATGTCGATGTCCCTGCGCCTG
CGCGGTGCTGGCAAAGACGCGGTGCGTAGCTAA
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Coding sequence (CDS) from alignment at tig00000897_pilon:133275..134057-

>Ggra5725.t1 ID=Ggra5725.t1|Name=Ggra5725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000897_pilon:133275..134057- (Gracilaria gracilis GNS1m male)
ATGCGCGCTTCAGTTCAAAACTACAAAAGCGGCAATGCTCCCAACACTGG
AGGACAGTCGAAGGCGAAGGTGATGGACAAAATGGGGTCAGCTGTTGAGA
AGGCGCAGCAACAAGTACTGGACGATGAAATCGTGAGCATTACTGAAGTT
TACGAAGGAGACGAGGATACTGCGAGTAGACTGGAGCTACCACGCGGCTC
TGAGCCAGACAAGAACGTAGATTTTGGGGATGATAGCGAAGAGTTTCTGG
ATATGACTGGCGGGGACAACGGGGCAGAAGAGGAATACGTTTCTTGCGAG
GATTACCTTGACGCACTTGCTGAAGGCTTGGCAAAGGGCTTCTTCGGCGC
GGCGCCGAAAAAGCACGCACGGGCAGAAACGAAATATGTGCCAAAGGCGG
TGACAAACGGCGGCGAGGTGCCGGGCACACAGGTGGCGAAGCAGCCGACG
GCATCGGCAGTGGCTGTGGTGGTGGAGAAAAAGCCGTCGCGCAAGTCGAA
AGGACGGAATCGTCGGCCTCGCTCAAGCGCTAGCGCGTTTCCGCCGTACA
AGTTGATGGAGCTTCTCGCTCACGACGCGCCGGACAAGACGCAGCTGAAA
GTGCTCAACGATGCGGACGCAGACGACGCAGAGAGCCAAATGTCGATGTC
CCTGCGCCTGCGCGGTGCTGGCAAAGACGCGGTGCGTAGCTAA
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