Ggra5698.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5698.t1
Unique NameGgra5698.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1388742..1389338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G8C6
PFAMsDUF1995
Max annot lvl2759|Eukaryota
Evalue4.95e-38
EggNOG OGs2CQRD@1|root,2R5HU@2759|Eukaryota
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5698Ggra5698Gracilaria gracilis GNS1m malegenetig00000842_pilon 1388742..1389338 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5698.t1.start1Ggra5698.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1388742..1388744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5698.t1.CDS1Ggra5698.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1388742..1389338 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5698.t1.exon1Ggra5698.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1388742..1389338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5698.t1.stop1Ggra5698.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1389336..1389338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5698.t1Ggra5698.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1388742..1389338 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5698.t1 ID=Ggra5698.t1|Name=Ggra5698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MATAALNELLDANRSFTREMVRSLVPKYDAKDLHVLFPDVGEARLAAKVY
GDVPFRIGAIPKQLPEYIRRPGVAVIVNPGFNISEWINIQNLVSDDSKCT
LVTVNADFDKVRGSYYPRLFYPGLYKAKEKVLNRFEEVYYIKSFSNGGTL
LRRYPEDWKLFYAGRSGTRLIWEGVKRPEFRWVEQQLSTKRTEDLVER*
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spliced messenger RNA

>Ggra5698.t1 ID=Ggra5698.t1|Name=Ggra5698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000842_pilon:1388742..1389338+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTGCCGCTCTTAACGAACTTCTTGATGCGAATCGTTCCTTCAC
GCGAGAGATGGTCCGATCATTAGTCCCGAAATACGACGCCAAAGATTTGC
ACGTCTTGTTCCCGGACGTGGGAGAGGCCCGATTGGCCGCGAAAGTGTAC
GGCGATGTTCCATTTCGGATTGGCGCCATTCCGAAGCAATTACCAGAATA
CATACGCCGTCCGGGAGTGGCAGTCATTGTCAATCCTGGGTTCAATATAT
CTGAATGGATTAACATTCAGAATTTGGTATCTGATGACTCCAAATGTACG
CTGGTCACGGTGAATGCCGATTTTGATAAGGTTAGGGGTAGTTATTACCC
ACGCTTATTCTACCCTGGTTTGTACAAAGCTAAGGAGAAAGTCTTGAACC
GCTTTGAAGAAGTATATTACATCAAATCCTTTTCAAACGGCGGCACACTG
CTCAGGAGATATCCAGAAGACTGGAAACTGTTCTATGCGGGACGAAGTGG
TACTCGATTGATCTGGGAGGGGGTCAAACGGCCAGAATTTCGATGGGTAG
AGCAGCAGTTGTCGACGAAAAGAACCGAGGATCTCGTAGAACGATAG
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protein sequence of Ggra5698.t1

>Ggra5698.t1 ID=Ggra5698.t1|Name=Ggra5698.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MATAALNELLDANRSFTREMVRSLVPKYDAKDLHVLFPDVGEARLAAKVY
GDVPFRIGAIPKQLPEYIRRPGVAVIVNPGFNISEWINIQNLVSDDSKCT
LVTVNADFDKVRGSYYPRLFYPGLYKAKEKVLNRFEEVYYIKSFSNGGTL
LRRYPEDWKLFYAGRSGTRLIWEGVKRPEFRWVEQQLSTKRTEDLVER*
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mRNA from alignment at tig00000842_pilon:1388742..1389338+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5698.t1 ID=Ggra5698.t1|Name=Ggra5698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000842_pilon:1388742..1389338+ (Gracilaria gracilis GNS1m male)
ATGGCCACTGCCGCTCTTAACGAACTTCTTGATGCGAATCGTTCCTTCAC
GCGAGAGATGGTCCGATCATTAGTCCCGAAATACGACGCCAAAGATTTGC
ACGTCTTGTTCCCGGACGTGGGAGAGGCCCGATTGGCCGCGAAAGTGTAC
GGCGATGTTCCATTTCGGATTGGCGCCATTCCGAAGCAATTACCAGAATA
CATACGCCGTCCGGGAGTGGCAGTCATTGTCAATCCTGGGTTCAATATAT
CTGAATGGATTAACATTCAGAATTTGGTATCTGATGACTCCAAATGTACG
CTGGTCACGGTGAATGCCGATTTTGATAAGGTTAGGGGTAGTTATTACCC
ACGCTTATTCTACCCTGGTTTGTACAAAGCTAAGGAGAAAGTCTTGAACC
GCTTTGAAGAAGTATATTACATCAAATCCTTTTCAAACGGCGGCACACTG
CTCAGGAGATATCCAGAAGACTGGAAACTGTTCTATGCGGGACGAAGTGG
TACTCGATTGATCTGGGAGGGGGTCAAACGGCCAGAATTTCGATGGGTAG
AGCAGCAGTTGTCGACGAAAAGAACCGAGGATCTCGTAGAACGATAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1388742..1389338+

>Ggra5698.t1 ID=Ggra5698.t1|Name=Ggra5698.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000842_pilon:1388742..1389338+ (Gracilaria gracilis GNS1m male)
ATGGCCACTGCCGCTCTTAACGAACTTCTTGATGCGAATCGTTCCTTCAC
GCGAGAGATGGTCCGATCATTAGTCCCGAAATACGACGCCAAAGATTTGC
ACGTCTTGTTCCCGGACGTGGGAGAGGCCCGATTGGCCGCGAAAGTGTAC
GGCGATGTTCCATTTCGGATTGGCGCCATTCCGAAGCAATTACCAGAATA
CATACGCCGTCCGGGAGTGGCAGTCATTGTCAATCCTGGGTTCAATATAT
CTGAATGGATTAACATTCAGAATTTGGTATCTGATGACTCCAAATGTACG
CTGGTCACGGTGAATGCCGATTTTGATAAGGTTAGGGGTAGTTATTACCC
ACGCTTATTCTACCCTGGTTTGTACAAAGCTAAGGAGAAAGTCTTGAACC
GCTTTGAAGAAGTATATTACATCAAATCCTTTTCAAACGGCGGCACACTG
CTCAGGAGATATCCAGAAGACTGGAAACTGTTCTATGCGGGACGAAGTGG
TACTCGATTGATCTGGGAGGGGGTCAAACGGCCAGAATTTCGATGGGTAG
AGCAGCAGTTGTCGACGAAAAGAACCGAGGATCTCGTAGAACGATAG
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