Ggra5673.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5673.t1
Unique NameGgra5673.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1317119..1317745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_131579
Preferred nameAMMECR1L
PFAMsAMMECR1
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Evalue2.19e-47
EggNOG OGsCOG2078@1|root,KOG3274@2759|Eukaryota
DescriptionAMMECR1
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5673Ggra5673Gracilaria gracilis GNS1m malegenetig00000842_pilon 1317119..1317745 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5673.t1.start1Ggra5673.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1317119..1317121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5673.t1.CDS1Ggra5673.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1317119..1317745 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5673.t1.exon1Ggra5673.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1317119..1317745 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5673.t1.stop1Ggra5673.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1317743..1317745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5673.t1Ggra5673.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1317119..1317745 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5673.t1 ID=Ggra5673.t1|Name=Ggra5673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MTPSLVHEASSRTEATVQMCAKAFETIATQLRPDLSPPPDFDLPSSQGGV
FVTWSVPRGRDSHYSLRGCIGTLSPAPLHIAVPRYAVQAAFHDSRFDPIS
VAELSKLKVGVSVLSQFEPAKDVFDWTTGVHGIVLYLPGGYSATYLPEVC
ADHGWTKDFCVRSLAEKAGFRGVVDESVLNSATVTRYQSSKTELAFDDYM
EMIEGTSQ*
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spliced messenger RNA

>Ggra5673.t1 ID=Ggra5673.t1|Name=Ggra5673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000842_pilon:1317119..1317745+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCGTCTTTGGTTCATGAAGCGTCATCGCGCACTGAAGCTACTGT
TCAGATGTGCGCGAAGGCCTTCGAAACGATCGCTACTCAGCTTCGCCCTG
ATCTTTCACCTCCTCCGGATTTTGATTTGCCGAGCAGTCAGGGTGGAGTA
TTTGTAACATGGAGCGTACCACGCGGAAGAGATTCCCATTACTCATTACG
CGGCTGCATTGGAACGCTTTCTCCAGCACCATTGCACATCGCTGTTCCCC
GTTATGCGGTCCAAGCTGCGTTTCATGACTCGCGCTTTGATCCGATATCC
GTTGCTGAGTTGTCGAAGCTGAAGGTTGGTGTTAGCGTATTATCACAGTT
TGAGCCAGCCAAAGATGTCTTTGACTGGACGACAGGTGTGCACGGTATAG
TTCTATACTTACCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGATCACGGGTGGACAAAAGATTTTTGTGTGAGGAGCCTTGCTGAAAA
GGCTGGTTTCAGGGGAGTTGTTGACGAATCAGTTTTGAATTCCGCTACTG
TGACTCGCTATCAATCCAGTAAGACTGAACTTGCATTTGATGACTACATG
GAGATGATTGAAGGCACTTCACAATGA
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protein sequence of Ggra5673.t1

>Ggra5673.t1 ID=Ggra5673.t1|Name=Ggra5673.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MTPSLVHEASSRTEATVQMCAKAFETIATQLRPDLSPPPDFDLPSSQGGV
FVTWSVPRGRDSHYSLRGCIGTLSPAPLHIAVPRYAVQAAFHDSRFDPIS
VAELSKLKVGVSVLSQFEPAKDVFDWTTGVHGIVLYLPGGYSATYLPEVC
ADHGWTKDFCVRSLAEKAGFRGVVDESVLNSATVTRYQSSKTELAFDDYM
EMIEGTSQ*
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mRNA from alignment at tig00000842_pilon:1317119..1317745+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5673.t1 ID=Ggra5673.t1|Name=Ggra5673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000842_pilon:1317119..1317745+ (Gracilaria gracilis GNS1m male)
ATGACTCCGTCTTTGGTTCATGAAGCGTCATCGCGCACTGAAGCTACTGT
TCAGATGTGCGCGAAGGCCTTCGAAACGATCGCTACTCAGCTTCGCCCTG
ATCTTTCACCTCCTCCGGATTTTGATTTGCCGAGCAGTCAGGGTGGAGTA
TTTGTAACATGGAGCGTACCACGCGGAAGAGATTCCCATTACTCATTACG
CGGCTGCATTGGAACGCTTTCTCCAGCACCATTGCACATCGCTGTTCCCC
GTTATGCGGTCCAAGCTGCGTTTCATGACTCGCGCTTTGATCCGATATCC
GTTGCTGAGTTGTCGAAGCTGAAGGTTGGTGTTAGCGTATTATCACAGTT
TGAGCCAGCCAAAGATGTCTTTGACTGGACGACAGGTGTGCACGGTATAG
TTCTATACTTACCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGATCACGGGTGGACAAAAGATTTTTGTGTGAGGAGCCTTGCTGAAAA
GGCTGGTTTCAGGGGAGTTGTTGACGAATCAGTTTTGAATTCCGCTACTG
TGACTCGCTATCAATCCAGTAAGACTGAACTTGCATTTGATGACTACATG
GAGATGATTGAAGGCACTTCACAATGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1317119..1317745+

>Ggra5673.t1 ID=Ggra5673.t1|Name=Ggra5673.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000842_pilon:1317119..1317745+ (Gracilaria gracilis GNS1m male)
ATGACTCCGTCTTTGGTTCATGAAGCGTCATCGCGCACTGAAGCTACTGT
TCAGATGTGCGCGAAGGCCTTCGAAACGATCGCTACTCAGCTTCGCCCTG
ATCTTTCACCTCCTCCGGATTTTGATTTGCCGAGCAGTCAGGGTGGAGTA
TTTGTAACATGGAGCGTACCACGCGGAAGAGATTCCCATTACTCATTACG
CGGCTGCATTGGAACGCTTTCTCCAGCACCATTGCACATCGCTGTTCCCC
GTTATGCGGTCCAAGCTGCGTTTCATGACTCGCGCTTTGATCCGATATCC
GTTGCTGAGTTGTCGAAGCTGAAGGTTGGTGTTAGCGTATTATCACAGTT
TGAGCCAGCCAAAGATGTCTTTGACTGGACGACAGGTGTGCACGGTATAG
TTCTATACTTACCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGATCACGGGTGGACAAAAGATTTTTGTGTGAGGAGCCTTGCTGAAAA
GGCTGGTTTCAGGGGAGTTGTTGACGAATCAGTTTTGAATTCCGCTACTG
TGACTCGCTATCAATCCAGTAAGACTGAACTTGCATTTGATGACTACATG
GAGATGATTGAAGGCACTTCACAATGA
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