Ggra5657.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5657.t1
Unique NameGgra5657.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1276445..1277036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_018301m
PFAMsUQ_con
Max annot lvl35493|Streptophyta
KEGG koko:K10573
KEGG Pathwayko04120,map04120
Evalue3.43e-96
EggNOG OGsCOG5078@1|root,KOG0419@2759|Eukaryota,37KTC@33090|Viridiplantae,3G8DM@35493|Streptophyta,4JKG1@91835|fabids
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5657Ggra5657Gracilaria gracilis GNS1m malegenetig00000842_pilon 1276445..1277036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1Ggra5657.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1276445..1277036 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1.stop1Ggra5657.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1276445..1276447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1.CDS1Ggra5657.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1276445..1276775 -
Ggra5657.t1.CDS2Ggra5657.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1276836..1276906 -
Ggra5657.t1.CDS3Ggra5657.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1276983..1277036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1.exon1Ggra5657.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1276445..1276775 -
Ggra5657.t1.exon2Ggra5657.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1276836..1276906 -
Ggra5657.t1.exon3Ggra5657.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1276983..1277036 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1.intron1Ggra5657.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1276776..1276835 -
Ggra5657.t1.intron2Ggra5657.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1276907..1276982 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5657.t1.start1Ggra5657.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1277034..1277036 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5657.t1 ID=Ggra5657.t1|Name=Ggra5657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MSTPARKRLIRDFKKLQNDPPSGISGAPCDNNIMKWNAVIFGPDDTPWEG
GTFKLTLQFTEDYPNKPPVVKFVSKLFHPNVYNDGGICLDILQSNWSPIY
DISAVLTSIQSLLCDPNPNSPANSEAARLFQENRREYDKRVQQIVEESWT
T*
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spliced messenger RNA

>Ggra5657.t1 ID=Ggra5657.t1|Name=Ggra5657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000842_pilon:1276445..1277036- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACGCCTGCTCGAAAACGTCTCATTCGCGACTTCAAGAAGCTGCA
GAATGACCCTCCCTCAGGTATAAGTGGCGCCCCTTGCGATAATAACATCA
TGAAGTGGAACGCTGTAATCTTCGGACCTGATGACACTCCATGGGAAGGC
GGAACATTCAAGCTAACTCTGCAATTTACCGAGGACTATCCGAACAAGCC
ACCGGTTGTGAAATTCGTGTCAAAACTTTTTCATCCTAATGTATATAATG
ACGGAGGAATCTGTCTCGACATTCTGCAAAGCAACTGGAGCCCAATATAC
GATATATCTGCGGTCCTTACTTCCATACAAAGCCTCCTTTGTGACCCAAA
TCCAAACTCCCCTGCCAACTCTGAAGCTGCACGGCTCTTTCAGGAAAACC
GCCGCGAATATGATAAGCGAGTACAACAGATAGTGGAGGAATCTTGGACA
ACCTAA
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protein sequence of Ggra5657.t1

>Ggra5657.t1 ID=Ggra5657.t1|Name=Ggra5657.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MSTPARKRLIRDFKKLQNDPPSGISGAPCDNNIMKWNAVIFGPDDTPWEG
GTFKLTLQFTEDYPNKPPVVKFVSKLFHPNVYNDGGICLDILQSNWSPIY
DISAVLTSIQSLLCDPNPNSPANSEAARLFQENRREYDKRVQQIVEESWT
T*
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mRNA from alignment at tig00000842_pilon:1276445..1277036-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5657.t1 ID=Ggra5657.t1|Name=Ggra5657.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=592bp|location=Sequence derived from alignment at tig00000842_pilon:1276445..1277036- (Gracilaria gracilis GNS1m male)
ATGTCCACGCCTGCTCGAAAACGTCTCATTCGCGACTTCAAGAAGCTGCA
GAATGTACGTTCTTTTTCCTTCTTTTACTCAATGGCAGTTCTTCTCACAT
GTCTTCGTTCTACCTTAAATCTGTATGTAGGACCCTCCCTCAGGTATAAG
TGGCGCCCCTTGCGATAATAACATCATGAAGTGGAACGCTGTAATCTTCG
GGTACGTATTCCCAGTCTCCCCGAATGACTTGATAAGCTCAGTGAACTAA
CGAAAACACAGACCTGATGACACTCCATGGGAAGGCGGAACATTCAAGCT
AACTCTGCAATTTACCGAGGACTATCCGAACAAGCCACCGGTTGTGAAAT
TCGTGTCAAAACTTTTTCATCCTAATGTATATAATGACGGAGGAATCTGT
CTCGACATTCTGCAAAGCAACTGGAGCCCAATATACGATATATCTGCGGT
CCTTACTTCCATACAAAGCCTCCTTTGTGACCCAAATCCAAACTCCCCTG
CCAACTCTGAAGCTGCACGGCTCTTTCAGGAAAACCGCCGCGAATATGAT
AAGCGAGTACAACAGATAGTGGAGGAATCTTGGACAACCTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1276445..1277036-

>Ggra5657.t1 ID=Ggra5657.t1|Name=Ggra5657.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000842_pilon:1276445..1277036- (Gracilaria gracilis GNS1m male)
ATGTCCACGCCTGCTCGAAAACGTCTCATTCGCGACTTCAAGAAGCTGCA
GAATGACCCTCCCTCAGGTATAAGTGGCGCCCCTTGCGATAATAACATCA
TGAAGTGGAACGCTGTAATCTTCGGACCTGATGACACTCCATGGGAAGGC
GGAACATTCAAGCTAACTCTGCAATTTACCGAGGACTATCCGAACAAGCC
ACCGGTTGTGAAATTCGTGTCAAAACTTTTTCATCCTAATGTATATAATG
ACGGAGGAATCTGTCTCGACATTCTGCAAAGCAACTGGAGCCCAATATAC
GATATATCTGCGGTCCTTACTTCCATACAAAGCCTCCTTTGTGACCCAAA
TCCAAACTCCCCTGCCAACTCTGAAGCTGCACGGCTCTTTCAGGAAAACC
GCCGCGAATATGATAAGCGAGTACAACAGATAGTGGAGGAATCTTGGACA
ACCTAA
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