Ggra5586.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5586.t1
Unique Name	Ggra5586.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1041409..1043040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5586	Ggra5586	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 1041409..1043040 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5586.t1.stop1	Ggra5586.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 1041409..1041411 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5586.t1.CDS1	Ggra5586.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 1041409..1043040 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5586.t1.exon1	Ggra5586.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 1041409..1043040 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5586.t1.start1	Ggra5586.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 1043038..1043040 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5586.t1	Ggra5586.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 1041409..1043040 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:1041409..1043040-
coding sequence from alignment at tig00000842_pilon:1041409..1043040-

mRNA sequence

>Ggra5586.t1 ID=Ggra5586.t1|Name=Ggra5586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MHPTATVPHSCAMSPTELLLPPTAEEAQALASLTLNPDFVCYETILSLQG
VLDFISHADIFNFLFTEDPVHIRHIAMPDLSSKSIAGHFIRTRVEPGNCT
NNSLSYHTSGSYLLMPAFTVNQTTYGFGIHTYFDTSSGNTCEGRPLAVHT
AESRFVKNESSGILLKVIDSEQAGFVTVEYSCMSSFTRVARSSATFYRNK
FRSVLRSGTLDMPHVLSCISEFYTANEYRRCPICSCGHNFCECMPQFAKP
RHPFDTNAFLKNISLRFGKYEGVGDVTCYVNGRDSRKALLGCRYVIDGQL
NTSGVEQMRSTVIEKHLSRVNPLNFSVTSYPPKYTQDMPTSGCQQPHGDI
LSELLSKQGDMFMPKPKSKSYENDSSWLLGSAQPALGASPPFGDQDCILP
DDFGLFFPQAAELMQPVQSKHPEQGSSNSTFREVSSSNSTLREVSSSNST
LRDVSNVAVSPVTPLSSSTQCSKQEELLRLQKLEKRKARNRASAMRSHLK
KKAFIDGLKQELHRNHDNILHLRSREMMLRKENLRLRKLLTKD*

spliced messenger RNA

>Ggra5586.t1 ID=Ggra5586.t1|Name=Ggra5586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:1041409..1043040- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCGACAGCCACCGTGCCTCATTCCTGTGCTATGTCACCAACAGA
GCTGCTGCTGCCTCCCACCGCAGAAGAAGCTCAAGCACTCGCCTCGCTCA
CGTTAAACCCCGATTTCGTCTGCTACGAAACCATTCTCTCTCTACAAGGC
GTACTCGACTTCATCTCGCACGCAGACATTTTCAACTTCCTCTTCACGGA
AGATCCTGTACATATTCGTCACATCGCCATGCCAGATCTGTCCTCCAAGT
CCATTGCCGGTCATTTCATTAGGACGCGCGTCGAGCCGGGCAATTGCACA
AACAACTCCCTTTCGTACCATACTTCTGGCTCATACCTTCTAATGCCAGC
TTTCACCGTCAATCAGACAACGTATGGCTTTGGCATTCACACTTACTTCG
ACACCTCGTCTGGTAATACGTGTGAAGGCCGTCCGCTTGCTGTTCACACC
GCCGAGTCCAGATTCGTCAAGAACGAATCAAGCGGCATTTTGCTCAAGGT
GATCGATTCGGAACAAGCTGGTTTCGTCACTGTAGAATACTCGTGCATGT
CATCTTTCACTCGCGTTGCTCGCTCCTCGGCCACCTTTTACCGCAACAAG
TTCCGATCCGTTCTCAGGTCGGGCACTCTGGACATGCCGCACGTGCTGTC
CTGCATTTCAGAGTTTTATACCGCAAACGAGTATCGACGGTGTCCCATCT
GTTCGTGCGGTCACAATTTCTGTGAGTGCATGCCGCAGTTTGCCAAGCCG
CGCCATCCTTTCGATACAAACGCTTTCCTGAAGAACATATCGTTGCGTTT
TGGCAAGTATGAAGGCGTGGGAGATGTCACATGCTACGTGAACGGCAGAG
ATAGCCGAAAGGCCTTACTTGGCTGTCGATATGTCATCGACGGCCAGTTA
AACACGTCAGGAGTGGAGCAAATGCGATCTACAGTGATTGAGAAGCATTT
GAGCCGTGTGAACCCCCTGAACTTCTCTGTTACATCATACCCACCAAAGT
ACACACAAGACATGCCTACGTCAGGCTGCCAGCAGCCACACGGTGACATT
CTCTCGGAATTACTGTCAAAACAAGGTGATATGTTCATGCCCAAGCCCAA
GTCCAAGAGCTACGAGAATGATTCTTCATGGCTTCTGGGCTCTGCTCAGC
CAGCTCTTGGCGCTAGCCCTCCCTTCGGTGATCAAGACTGTATCCTCCCT
GACGATTTCGGTCTGTTCTTTCCCCAAGCTGCAGAACTCATGCAACCCGT
ACAATCCAAGCATCCTGAACAGGGCTCTTCGAATTCCACCTTTAGGGAAG
TTTCGTCTTCGAACTCCACCTTGAGGGAAGTTTCGTCTTCGAACTCCACC
TTGAGGGACGTTTCGAACGTCGCCGTTTCGCCAGTCACCCCACTGAGCAG
CTCCACTCAATGCAGTAAGCAAGAAGAGTTGCTTCGACTTCAGAAACTCG
AGAAGCGTAAGGCACGCAACCGTGCTTCAGCCATGCGAAGCCATCTAAAG
AAGAAGGCCTTCATCGATGGTTTGAAACAAGAGCTGCACAGGAATCACGA
CAACATACTTCATCTGAGGTCTCGAGAAATGATGCTGAGAAAGGAAAACT
TGCGACTACGTAAACTTCTCACCAAGGATTAG

protein sequence of Ggra5586.t1

>Ggra5586.t1 ID=Ggra5586.t1|Name=Ggra5586.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MHPTATVPHSCAMSPTELLLPPTAEEAQALASLTLNPDFVCYETILSLQG
VLDFISHADIFNFLFTEDPVHIRHIAMPDLSSKSIAGHFIRTRVEPGNCT
NNSLSYHTSGSYLLMPAFTVNQTTYGFGIHTYFDTSSGNTCEGRPLAVHT
AESRFVKNESSGILLKVIDSEQAGFVTVEYSCMSSFTRVARSSATFYRNK
FRSVLRSGTLDMPHVLSCISEFYTANEYRRCPICSCGHNFCECMPQFAKP
RHPFDTNAFLKNISLRFGKYEGVGDVTCYVNGRDSRKALLGCRYVIDGQL
NTSGVEQMRSTVIEKHLSRVNPLNFSVTSYPPKYTQDMPTSGCQQPHGDI
LSELLSKQGDMFMPKPKSKSYENDSSWLLGSAQPALGASPPFGDQDCILP
DDFGLFFPQAAELMQPVQSKHPEQGSSNSTFREVSSSNSTLREVSSSNST
LRDVSNVAVSPVTPLSSSTQCSKQEELLRLQKLEKRKARNRASAMRSHLK
KKAFIDGLKQELHRNHDNILHLRSREMMLRKENLRLRKLLTKD*

mRNA from alignment at tig00000842_pilon:1041409..1043040-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5586.t1 ID=Ggra5586.t1|Name=Ggra5586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:1041409..1043040- (Gracilaria gracilis GNS1m male)
ATGCATCCGACAGCCACCGTGCCTCATTCCTGTGCTATGTCACCAACAGA
GCTGCTGCTGCCTCCCACCGCAGAAGAAGCTCAAGCACTCGCCTCGCTCA
CGTTAAACCCCGATTTCGTCTGCTACGAAACCATTCTCTCTCTACAAGGC
GTACTCGACTTCATCTCGCACGCAGACATTTTCAACTTCCTCTTCACGGA
AGATCCTGTACATATTCGTCACATCGCCATGCCAGATCTGTCCTCCAAGT
CCATTGCCGGTCATTTCATTAGGACGCGCGTCGAGCCGGGCAATTGCACA
AACAACTCCCTTTCGTACCATACTTCTGGCTCATACCTTCTAATGCCAGC
TTTCACCGTCAATCAGACAACGTATGGCTTTGGCATTCACACTTACTTCG
ACACCTCGTCTGGTAATACGTGTGAAGGCCGTCCGCTTGCTGTTCACACC
GCCGAGTCCAGATTCGTCAAGAACGAATCAAGCGGCATTTTGCTCAAGGT
GATCGATTCGGAACAAGCTGGTTTCGTCACTGTAGAATACTCGTGCATGT
CATCTTTCACTCGCGTTGCTCGCTCCTCGGCCACCTTTTACCGCAACAAG
TTCCGATCCGTTCTCAGGTCGGGCACTCTGGACATGCCGCACGTGCTGTC
CTGCATTTCAGAGTTTTATACCGCAAACGAGTATCGACGGTGTCCCATCT
GTTCGTGCGGTCACAATTTCTGTGAGTGCATGCCGCAGTTTGCCAAGCCG
CGCCATCCTTTCGATACAAACGCTTTCCTGAAGAACATATCGTTGCGTTT
TGGCAAGTATGAAGGCGTGGGAGATGTCACATGCTACGTGAACGGCAGAG
ATAGCCGAAAGGCCTTACTTGGCTGTCGATATGTCATCGACGGCCAGTTA
AACACGTCAGGAGTGGAGCAAATGCGATCTACAGTGATTGAGAAGCATTT
GAGCCGTGTGAACCCCCTGAACTTCTCTGTTACATCATACCCACCAAAGT
ACACACAAGACATGCCTACGTCAGGCTGCCAGCAGCCACACGGTGACATT
CTCTCGGAATTACTGTCAAAACAAGGTGATATGTTCATGCCCAAGCCCAA
GTCCAAGAGCTACGAGAATGATTCTTCATGGCTTCTGGGCTCTGCTCAGC
CAGCTCTTGGCGCTAGCCCTCCCTTCGGTGATCAAGACTGTATCCTCCCT
GACGATTTCGGTCTGTTCTTTCCCCAAGCTGCAGAACTCATGCAACCCGT
ACAATCCAAGCATCCTGAACAGGGCTCTTCGAATTCCACCTTTAGGGAAG
TTTCGTCTTCGAACTCCACCTTGAGGGAAGTTTCGTCTTCGAACTCCACC
TTGAGGGACGTTTCGAACGTCGCCGTTTCGCCAGTCACCCCACTGAGCAG
CTCCACTCAATGCAGTAAGCAAGAAGAGTTGCTTCGACTTCAGAAACTCG
AGAAGCGTAAGGCACGCAACCGTGCTTCAGCCATGCGAAGCCATCTAAAG
AAGAAGGCCTTCATCGATGGTTTGAAACAAGAGCTGCACAGGAATCACGA
CAACATACTTCATCTGAGGTCTCGAGAAATGATGCTGAGAAAGGAAAACT
TGCGACTACGTAAACTTCTCACCAAGGATTAG

Coding sequence (CDS) from alignment at tig00000842_pilon:1041409..1043040-

>Ggra5586.t1 ID=Ggra5586.t1|Name=Ggra5586.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000842_pilon:1041409..1043040- (Gracilaria gracilis GNS1m male)
ATGCATCCGACAGCCACCGTGCCTCATTCCTGTGCTATGTCACCAACAGA
GCTGCTGCTGCCTCCCACCGCAGAAGAAGCTCAAGCACTCGCCTCGCTCA
CGTTAAACCCCGATTTCGTCTGCTACGAAACCATTCTCTCTCTACAAGGC
GTACTCGACTTCATCTCGCACGCAGACATTTTCAACTTCCTCTTCACGGA
AGATCCTGTACATATTCGTCACATCGCCATGCCAGATCTGTCCTCCAAGT
CCATTGCCGGTCATTTCATTAGGACGCGCGTCGAGCCGGGCAATTGCACA
AACAACTCCCTTTCGTACCATACTTCTGGCTCATACCTTCTAATGCCAGC
TTTCACCGTCAATCAGACAACGTATGGCTTTGGCATTCACACTTACTTCG
ACACCTCGTCTGGTAATACGTGTGAAGGCCGTCCGCTTGCTGTTCACACC
GCCGAGTCCAGATTCGTCAAGAACGAATCAAGCGGCATTTTGCTCAAGGT
GATCGATTCGGAACAAGCTGGTTTCGTCACTGTAGAATACTCGTGCATGT
CATCTTTCACTCGCGTTGCTCGCTCCTCGGCCACCTTTTACCGCAACAAG
TTCCGATCCGTTCTCAGGTCGGGCACTCTGGACATGCCGCACGTGCTGTC
CTGCATTTCAGAGTTTTATACCGCAAACGAGTATCGACGGTGTCCCATCT
GTTCGTGCGGTCACAATTTCTGTGAGTGCATGCCGCAGTTTGCCAAGCCG
CGCCATCCTTTCGATACAAACGCTTTCCTGAAGAACATATCGTTGCGTTT
TGGCAAGTATGAAGGCGTGGGAGATGTCACATGCTACGTGAACGGCAGAG
ATAGCCGAAAGGCCTTACTTGGCTGTCGATATGTCATCGACGGCCAGTTA
AACACGTCAGGAGTGGAGCAAATGCGATCTACAGTGATTGAGAAGCATTT
GAGCCGTGTGAACCCCCTGAACTTCTCTGTTACATCATACCCACCAAAGT
ACACACAAGACATGCCTACGTCAGGCTGCCAGCAGCCACACGGTGACATT
CTCTCGGAATTACTGTCAAAACAAGGTGATATGTTCATGCCCAAGCCCAA
GTCCAAGAGCTACGAGAATGATTCTTCATGGCTTCTGGGCTCTGCTCAGC
CAGCTCTTGGCGCTAGCCCTCCCTTCGGTGATCAAGACTGTATCCTCCCT
GACGATTTCGGTCTGTTCTTTCCCCAAGCTGCAGAACTCATGCAACCCGT
ACAATCCAAGCATCCTGAACAGGGCTCTTCGAATTCCACCTTTAGGGAAG
TTTCGTCTTCGAACTCCACCTTGAGGGAAGTTTCGTCTTCGAACTCCACC
TTGAGGGACGTTTCGAACGTCGCCGTTTCGCCAGTCACCCCACTGAGCAG
CTCCACTCAATGCAGTAAGCAAGAAGAGTTGCTTCGACTTCAGAAACTCG
AGAAGCGTAAGGCACGCAACCGTGCTTCAGCCATGCGAAGCCATCTAAAG
AAGAAGGCCTTCATCGATGGTTTGAAACAAGAGCTGCACAGGAATCACGA
CAACATACTTCATCTGAGGTCTCGAGAAATGATGCTGAGAAAGGAAAACT
TGCGACTACGTAAACTTCTCACCAAGGATTAG