Ggra5535.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5535.t1
Unique NameGgra5535.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:846567..847607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002126236.1
PFAMsAbhydrolase_2
Max annot lvl33208|Metazoa
KEGG rclassRC00020,RC00041
KEGG koko:K06128
KEGG ReactionR02746,R03416
KEGG Pathwayko00564,ko05231,map00564,map05231
Evalue1.08e-08
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota,38RN5@33154|Opisthokonta,3BI64@33208|Metazoa,3CZAF@33213|Bilateria,48183@7711|Chordata
EC3.1.1.5
Descriptionprotein depalmitoylation
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5535Ggra5535Gracilaria gracilis GNS1m malegenetig00000842_pilon 846567..847607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5535.t1.stop1Ggra5535.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 846567..846569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5535.t1.CDS1Ggra5535.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 846567..847607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5535.t1.exon1Ggra5535.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 846567..847607 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5535.t1.start1Ggra5535.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 847605..847607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5535.t1Ggra5535.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 846567..847607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5535.t1 ID=Ggra5535.t1|Name=Ggra5535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MRPTAAILLAALLAAHVSLAVAAWRPVELIKQFLPCAALRLSRPPWTTTY
FEPSIIPSSVQNITQEQLEELVSAENFTCGGTIPVTGHTLTCSPAGFTFI
PPRPARFALITLHGIMPPGNEPSLLPILARLLATDSALGSQIRVEFPLYE
FRRITFSTFRSPPIPVARAYFDLFPPPAAPTLEATIAAQDDRLGLYRSAQ
FVDFVVRSQMCKASIPTSRVALFGHSLGGFAVLETVMSTGLDLAGAVVVS
GSLPRAGDYVQPGLQPFDTRRRSFNISMIHATADDIVPFAFANLSAQVLQ
PVFTSLGGGFSFQPLQGLDHFVKLFADDQVYQRVTTALRNAFVRYV*
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spliced messenger RNA

>Ggra5535.t1 ID=Ggra5535.t1|Name=Ggra5535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000842_pilon:846567..847607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACCCACAGCCGCGATCTTGCTCGCGGCGCTTCTCGCGGCGCATGT
CTCGCTGGCCGTCGCTGCATGGCGCCCCGTAGAGCTCATCAAGCAGTTCC
TGCCATGCGCCGCGCTGCGTCTATCGCGTCCGCCGTGGACCACGACGTAC
TTCGAGCCGTCCATCATCCCGTCCTCCGTGCAAAACATCACGCAAGAGCA
GCTCGAAGAGCTTGTATCCGCGGAAAACTTCACATGCGGCGGCACGATCC
CGGTGACCGGACACACGCTCACTTGCTCGCCGGCCGGCTTCACATTCATT
CCGCCGCGCCCCGCGCGCTTCGCGCTCATCACGCTGCACGGCATCATGCC
GCCCGGTAACGAGCCGTCGCTGCTGCCTATATTGGCGCGACTGCTGGCCA
CCGACTCGGCGCTAGGATCGCAGATTCGGGTGGAGTTTCCGCTGTATGAG
TTCCGTCGCATCACGTTCTCGACGTTCAGGTCGCCGCCCATTCCGGTGGC
GCGCGCTTACTTTGATCTGTTTCCGCCGCCGGCGGCGCCCACGTTGGAGG
CGACCATCGCGGCGCAGGACGATCGACTGGGGCTGTATCGCAGCGCGCAG
TTCGTGGACTTTGTGGTGCGCTCACAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGCGTGGCGCTGTTCGGCCACTCCCTGGGCGGATTCGCCGTGCTGG
AGACCGTGATGTCGACAGGACTGGATCTGGCGGGCGCCGTGGTGGTGTCC
GGCAGCTTGCCGAGGGCTGGCGATTACGTTCAGCCCGGGTTGCAGCCGTT
CGACACGCGAAGACGATCGTTCAACATCTCGATGATTCACGCCACGGCTG
ACGATATTGTGCCGTTCGCGTTCGCCAACCTGTCGGCGCAGGTTCTGCAG
CCCGTGTTCACTTCGCTCGGCGGCGGCTTTTCGTTCCAGCCTCTGCAAGG
GCTGGATCACTTCGTGAAGCTGTTCGCCGACGACCAGGTTTATCAACGCG
TGACCACCGCGCTACGCAACGCGTTTGTTCGTTACGTGTAG
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protein sequence of Ggra5535.t1

>Ggra5535.t1 ID=Ggra5535.t1|Name=Ggra5535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MRPTAAILLAALLAAHVSLAVAAWRPVELIKQFLPCAALRLSRPPWTTTY
FEPSIIPSSVQNITQEQLEELVSAENFTCGGTIPVTGHTLTCSPAGFTFI
PPRPARFALITLHGIMPPGNEPSLLPILARLLATDSALGSQIRVEFPLYE
FRRITFSTFRSPPIPVARAYFDLFPPPAAPTLEATIAAQDDRLGLYRSAQ
FVDFVVRSQMCKASIPTSRVALFGHSLGGFAVLETVMSTGLDLAGAVVVS
GSLPRAGDYVQPGLQPFDTRRRSFNISMIHATADDIVPFAFANLSAQVLQ
PVFTSLGGGFSFQPLQGLDHFVKLFADDQVYQRVTTALRNAFVRYV*
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mRNA from alignment at tig00000842_pilon:846567..847607-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5535.t1 ID=Ggra5535.t1|Name=Ggra5535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000842_pilon:846567..847607- (Gracilaria gracilis GNS1m male)
ATGCGACCCACAGCCGCGATCTTGCTCGCGGCGCTTCTCGCGGCGCATGT
CTCGCTGGCCGTCGCTGCATGGCGCCCCGTAGAGCTCATCAAGCAGTTCC
TGCCATGCGCCGCGCTGCGTCTATCGCGTCCGCCGTGGACCACGACGTAC
TTCGAGCCGTCCATCATCCCGTCCTCCGTGCAAAACATCACGCAAGAGCA
GCTCGAAGAGCTTGTATCCGCGGAAAACTTCACATGCGGCGGCACGATCC
CGGTGACCGGACACACGCTCACTTGCTCGCCGGCCGGCTTCACATTCATT
CCGCCGCGCCCCGCGCGCTTCGCGCTCATCACGCTGCACGGCATCATGCC
GCCCGGTAACGAGCCGTCGCTGCTGCCTATATTGGCGCGACTGCTGGCCA
CCGACTCGGCGCTAGGATCGCAGATTCGGGTGGAGTTTCCGCTGTATGAG
TTCCGTCGCATCACGTTCTCGACGTTCAGGTCGCCGCCCATTCCGGTGGC
GCGCGCTTACTTTGATCTGTTTCCGCCGCCGGCGGCGCCCACGTTGGAGG
CGACCATCGCGGCGCAGGACGATCGACTGGGGCTGTATCGCAGCGCGCAG
TTCGTGGACTTTGTGGTGCGCTCACAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGCGTGGCGCTGTTCGGCCACTCCCTGGGCGGATTCGCCGTGCTGG
AGACCGTGATGTCGACAGGACTGGATCTGGCGGGCGCCGTGGTGGTGTCC
GGCAGCTTGCCGAGGGCTGGCGATTACGTTCAGCCCGGGTTGCAGCCGTT
CGACACGCGAAGACGATCGTTCAACATCTCGATGATTCACGCCACGGCTG
ACGATATTGTGCCGTTCGCGTTCGCCAACCTGTCGGCGCAGGTTCTGCAG
CCCGTGTTCACTTCGCTCGGCGGCGGCTTTTCGTTCCAGCCTCTGCAAGG
GCTGGATCACTTCGTGAAGCTGTTCGCCGACGACCAGGTTTATCAACGCG
TGACCACCGCGCTACGCAACGCGTTTGTTCGTTACGTGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:846567..847607-

>Ggra5535.t1 ID=Ggra5535.t1|Name=Ggra5535.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000842_pilon:846567..847607- (Gracilaria gracilis GNS1m male)
ATGCGACCCACAGCCGCGATCTTGCTCGCGGCGCTTCTCGCGGCGCATGT
CTCGCTGGCCGTCGCTGCATGGCGCCCCGTAGAGCTCATCAAGCAGTTCC
TGCCATGCGCCGCGCTGCGTCTATCGCGTCCGCCGTGGACCACGACGTAC
TTCGAGCCGTCCATCATCCCGTCCTCCGTGCAAAACATCACGCAAGAGCA
GCTCGAAGAGCTTGTATCCGCGGAAAACTTCACATGCGGCGGCACGATCC
CGGTGACCGGACACACGCTCACTTGCTCGCCGGCCGGCTTCACATTCATT
CCGCCGCGCCCCGCGCGCTTCGCGCTCATCACGCTGCACGGCATCATGCC
GCCCGGTAACGAGCCGTCGCTGCTGCCTATATTGGCGCGACTGCTGGCCA
CCGACTCGGCGCTAGGATCGCAGATTCGGGTGGAGTTTCCGCTGTATGAG
TTCCGTCGCATCACGTTCTCGACGTTCAGGTCGCCGCCCATTCCGGTGGC
GCGCGCTTACTTTGATCTGTTTCCGCCGCCGGCGGCGCCCACGTTGGAGG
CGACCATCGCGGCGCAGGACGATCGACTGGGGCTGTATCGCAGCGCGCAG
TTCGTGGACTTTGTGGTGCGCTCACAGATGTGCAAGGCGTCCATCCCCAC
GTCGCGCGTGGCGCTGTTCGGCCACTCCCTGGGCGGATTCGCCGTGCTGG
AGACCGTGATGTCGACAGGACTGGATCTGGCGGGCGCCGTGGTGGTGTCC
GGCAGCTTGCCGAGGGCTGGCGATTACGTTCAGCCCGGGTTGCAGCCGTT
CGACACGCGAAGACGATCGTTCAACATCTCGATGATTCACGCCACGGCTG
ACGATATTGTGCCGTTCGCGTTCGCCAACCTGTCGGCGCAGGTTCTGCAG
CCCGTGTTCACTTCGCTCGGCGGCGGCTTTTCGTTCCAGCCTCTGCAAGG
GCTGGATCACTTCGTGAAGCTGTTCGCCGACGACCAGGTTTATCAACGCG
TGACCACCGCGCTACGCAACGCGTTTGTTCGTTACGTGTAG
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