Ggra5484.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5484.t1
Unique NameGgra5484.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:429064..429705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31870.EFQ33568
PFAMsEF-hand_1,EF-hand_5
Max annot lvl4751|Fungi
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Evalue9.55e-10
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,3AMBG@33154|Opisthokonta,3PE39@4751|Fungi,3R3II@4890|Ascomycota,21AIN@147550|Sordariomycetes,1EVZM@1028384|Glomerellales
DescriptionEF-hand domain
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5484Ggra5484Gracilaria gracilis GNS1m malegenetig00000842_pilon 429064..429705 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5484.t1.start1Ggra5484.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 429064..429066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5484.t1.CDS1Ggra5484.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 429064..429705 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5484.t1.exon1Ggra5484.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 429064..429705 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5484.t1.stop1Ggra5484.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 429703..429705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5484.t1Ggra5484.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 429064..429705 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5484.t1 ID=Ggra5484.t1|Name=Ggra5484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MISIYRVPPRLAASPRPRAGGAASSLAASKMSALANVQNQSDLLTHSIND
LHRVFDLFDLSKDKHMDFRELLQVVRLTGQNPPGTETVKQCLRQACRLKP
DDPVPTSIDFKQFLDFFAVYKLNMGDVENDEIFQVLDEDESGTISAEELA
KVMNVFGVTITLGEALAMTDVADEYNPAPNVLQKNHIDINDFSNIMRRLN
LFEHEEHSSSASD*
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spliced messenger RNA

>Ggra5484.t1 ID=Ggra5484.t1|Name=Ggra5484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:429064..429705+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGTATCTACAGAGTACCACCACGACTCGCTGCATCTCCGCGGCC
TCGCGCCGGAGGCGCCGCATCGTCGCTCGCTGCCAGCAAAATGTCCGCGC
TCGCAAACGTGCAGAACCAGTCCGACTTGCTGACGCACTCCATCAATGAC
CTGCACCGCGTGTTCGACCTCTTCGACCTTTCCAAGGACAAGCACATGGA
CTTCCGCGAGCTTCTACAGGTTGTGCGTCTCACCGGACAGAACCCGCCGG
GCACGGAAACCGTCAAGCAATGTCTACGCCAGGCCTGTCGCCTCAAGCCA
GACGACCCTGTACCAACCTCCATCGACTTTAAGCAATTCCTCGACTTTTT
CGCCGTGTACAAGCTCAACATGGGCGACGTGGAGAACGACGAAATCTTCC
AGGTGCTGGATGAGGATGAGTCCGGTACCATTTCTGCTGAGGAGTTGGCA
AAGGTCATGAATGTTTTCGGCGTCACCATTACCTTGGGTGAGGCCTTGGC
CATGACTGATGTTGCCGATGAATACAACCCGGCACCCAATGTGCTGCAGA
AGAACCATATCGATATCAATGACTTCTCCAACATTATGAGACGTCTTAAC
CTCTTCGAGCACGAAGAACACTCCTCGTCAGCATCGGATTGA
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protein sequence of Ggra5484.t1

>Ggra5484.t1 ID=Ggra5484.t1|Name=Ggra5484.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MISIYRVPPRLAASPRPRAGGAASSLAASKMSALANVQNQSDLLTHSIND
LHRVFDLFDLSKDKHMDFRELLQVVRLTGQNPPGTETVKQCLRQACRLKP
DDPVPTSIDFKQFLDFFAVYKLNMGDVENDEIFQVLDEDESGTISAEELA
KVMNVFGVTITLGEALAMTDVADEYNPAPNVLQKNHIDINDFSNIMRRLN
LFEHEEHSSSASD*
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mRNA from alignment at tig00000842_pilon:429064..429705+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5484.t1 ID=Ggra5484.t1|Name=Ggra5484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:429064..429705+ (Gracilaria gracilis GNS1m male)
ATGATAAGTATCTACAGAGTACCACCACGACTCGCTGCATCTCCGCGGCC
TCGCGCCGGAGGCGCCGCATCGTCGCTCGCTGCCAGCAAAATGTCCGCGC
TCGCAAACGTGCAGAACCAGTCCGACTTGCTGACGCACTCCATCAATGAC
CTGCACCGCGTGTTCGACCTCTTCGACCTTTCCAAGGACAAGCACATGGA
CTTCCGCGAGCTTCTACAGGTTGTGCGTCTCACCGGACAGAACCCGCCGG
GCACGGAAACCGTCAAGCAATGTCTACGCCAGGCCTGTCGCCTCAAGCCA
GACGACCCTGTACCAACCTCCATCGACTTTAAGCAATTCCTCGACTTTTT
CGCCGTGTACAAGCTCAACATGGGCGACGTGGAGAACGACGAAATCTTCC
AGGTGCTGGATGAGGATGAGTCCGGTACCATTTCTGCTGAGGAGTTGGCA
AAGGTCATGAATGTTTTCGGCGTCACCATTACCTTGGGTGAGGCCTTGGC
CATGACTGATGTTGCCGATGAATACAACCCGGCACCCAATGTGCTGCAGA
AGAACCATATCGATATCAATGACTTCTCCAACATTATGAGACGTCTTAAC
CTCTTCGAGCACGAAGAACACTCCTCGTCAGCATCGGATTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:429064..429705+

>Ggra5484.t1 ID=Ggra5484.t1|Name=Ggra5484.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:429064..429705+ (Gracilaria gracilis GNS1m male)
ATGATAAGTATCTACAGAGTACCACCACGACTCGCTGCATCTCCGCGGCC
TCGCGCCGGAGGCGCCGCATCGTCGCTCGCTGCCAGCAAAATGTCCGCGC
TCGCAAACGTGCAGAACCAGTCCGACTTGCTGACGCACTCCATCAATGAC
CTGCACCGCGTGTTCGACCTCTTCGACCTTTCCAAGGACAAGCACATGGA
CTTCCGCGAGCTTCTACAGGTTGTGCGTCTCACCGGACAGAACCCGCCGG
GCACGGAAACCGTCAAGCAATGTCTACGCCAGGCCTGTCGCCTCAAGCCA
GACGACCCTGTACCAACCTCCATCGACTTTAAGCAATTCCTCGACTTTTT
CGCCGTGTACAAGCTCAACATGGGCGACGTGGAGAACGACGAAATCTTCC
AGGTGCTGGATGAGGATGAGTCCGGTACCATTTCTGCTGAGGAGTTGGCA
AAGGTCATGAATGTTTTCGGCGTCACCATTACCTTGGGTGAGGCCTTGGC
CATGACTGATGTTGCCGATGAATACAACCCGGCACCCAATGTGCTGCAGA
AGAACCATATCGATATCAATGACTTCTCCAACATTATGAGACGTCTTAAC
CTCTTCGAGCACGAAGAACACTCCTCGTCAGCATCGGATTGA
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