Ggra5476.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5476.t3
Unique Name	Ggra5476.t3
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:408185..409396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5476	Ggra5476	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 408185..410770 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5476.t3.stop1	Ggra5476.t3.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 408185..408187 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5476.t3.CDS1	Ggra5476.t3.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 408185..409396 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5476.t3.exon1	Ggra5476.t3.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 408185..409396 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5476.t3.start1	Ggra5476.t3.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 409394..409396 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5476.t3	Ggra5476.t3	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 408185..409396 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:408185..409396-
coding sequence from alignment at tig00000842_pilon:408185..409396-

mRNA sequence

>Ggra5476.t3 ID=Ggra5476.t3|Name=Ggra5476.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=404bp
MGQEHVRSNTIQGIRCNPRSSKFFDTRSGHEVVVVPDEEMFGVLYRLVKN
LILHRRESHIASFVSLILNKSIRENIAGDFCKKLILFIEKLSNPAMLPNL
HNFLFEKVADVDITWIQREIELHFEDKLASLSPESMTSAFVKKVVYHLKI
SEFVKQRKKDLAARAKEYRRKRRFLWRNGVKFKLPSVPKYPTEVEKKKSE
MRMATEQFAHEFAWYSREIFLHDDIQSHFFLARFMMNNIHNTKTEEKLKC
IIGRIGDVERADFFVEMERYITALWTKLIKELRDFLTYADPAALLEAFCA
DFDPRCRKVLIDVSTEMNPLGKVSTAHAVLIARYGNRIGSFCAKAFGRAN
DELSFKKKVLLIRGSNIEALCEVYEKFQESIASRQNAPVTDVPTENHEGG
SAA*

spliced messenger RNA

>Ggra5476.t3 ID=Ggra5476.t3|Name=Ggra5476.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000842_pilon:408185..409396- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAGAGCATGTACGGTCAAACACAATTCAGGGTATACGCTGCAA
TCCACGAAGTTCCAAATTTTTTGACACAAGAAGTGGGCACGAAGTAGTGG
TCGTTCCAGATGAGGAGATGTTCGGAGTGCTTTACAGGCTTGTCAAAAAT
CTAATACTACATCGACGTGAAAGCCACATTGCCTCTTTTGTGTCGCTCAT
CTTGAACAAGAGTATCAGGGAGAATATCGCAGGAGATTTTTGTAAGAAGC
TTATCCTATTCATCGAAAAGCTTTCTAACCCTGCTATGCTGCCAAACTTA
CATAATTTCTTGTTTGAGAAGGTGGCCGATGTAGATATCACTTGGATACA
GAGGGAAATTGAGCTTCACTTTGAGGACAAACTAGCCTCTCTGAGCCCTG
AGAGCATGACGTCAGCTTTCGTTAAGAAAGTGGTCTATCATCTGAAGATC
TCTGAATTCGTGAAGCAAAGGAAGAAAGACCTGGCCGCTCGTGCTAAGGA
GTATCGCAGGAAACGCAGATTTCTGTGGCGAAATGGAGTGAAATTCAAGC
TTCCCTCCGTTCCAAAGTATCCGACTGAAGTGGAGAAAAAGAAATCGGAA
ATGAGAATGGCTACCGAACAATTTGCCCATGAATTTGCATGGTATTCCCG
GGAGATATTTCTCCATGATGACATTCAGTCACATTTCTTCCTCGCTCGTT
TTATGATGAACAATATCCACAACACAAAGACTGAAGAAAAATTGAAATGC
ATAATTGGAAGAATTGGAGATGTCGAGAGGGCAGACTTCTTCGTGGAGAT
GGAGAGGTACATTACGGCTTTATGGACTAAACTCATCAAAGAACTGCGCG
ATTTCCTGACATACGCCGATCCTGCTGCATTACTGGAAGCCTTTTGTGCT
GATTTCGACCCAAGATGCAGAAAAGTTCTCATCGATGTAAGCACAGAAAT
GAATCCCCTGGGCAAGGTGAGCACCGCACATGCAGTTTTGATCGCGCGGT
ATGGAAATCGAATTGGTTCCTTCTGTGCAAAGGCGTTCGGCAGAGCAAAT
GATGAGCTGAGCTTCAAAAAGAAAGTGTTGCTGATAAGGGGAAGCAATAT
AGAGGCTCTATGTGAGGTGTATGAGAAATTCCAAGAATCGATTGCATCAC
GTCAAAATGCGCCGGTCACGGACGTTCCAACAGAGAATCATGAAGGTGGA
AGTGCCGCTTAG

protein sequence of Ggra5476.t3

>Ggra5476.t3 ID=Ggra5476.t3|Name=Ggra5476.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MGQEHVRSNTIQGIRCNPRSSKFFDTRSGHEVVVVPDEEMFGVLYRLVKN
LILHRRESHIASFVSLILNKSIRENIAGDFCKKLILFIEKLSNPAMLPNL
HNFLFEKVADVDITWIQREIELHFEDKLASLSPESMTSAFVKKVVYHLKI
SEFVKQRKKDLAARAKEYRRKRRFLWRNGVKFKLPSVPKYPTEVEKKKSE
MRMATEQFAHEFAWYSREIFLHDDIQSHFFLARFMMNNIHNTKTEEKLKC
IIGRIGDVERADFFVEMERYITALWTKLIKELRDFLTYADPAALLEAFCA
DFDPRCRKVLIDVSTEMNPLGKVSTAHAVLIARYGNRIGSFCAKAFGRAN
DELSFKKKVLLIRGSNIEALCEVYEKFQESIASRQNAPVTDVPTENHEGG
SAA*

mRNA from alignment at tig00000842_pilon:408185..409396-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5476.t3 ID=Ggra5476.t3|Name=Ggra5476.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00000842_pilon:408185..409396- (Gracilaria gracilis GNS1m male)
ATGGGACAAGAGCATGTACGGTCAAACACAATTCAGGGTATACGCTGCAA
TCCACGAAGTTCCAAATTTTTTGACACAAGAAGTGGGCACGAAGTAGTGG
TCGTTCCAGATGAGGAGATGTTCGGAGTGCTTTACAGGCTTGTCAAAAAT
CTAATACTACATCGACGTGAAAGCCACATTGCCTCTTTTGTGTCGCTCAT
CTTGAACAAGAGTATCAGGGAGAATATCGCAGGAGATTTTTGTAAGAAGC
TTATCCTATTCATCGAAAAGCTTTCTAACCCTGCTATGCTGCCAAACTTA
CATAATTTCTTGTTTGAGAAGGTGGCCGATGTAGATATCACTTGGATACA
GAGGGAAATTGAGCTTCACTTTGAGGACAAACTAGCCTCTCTGAGCCCTG
AGAGCATGACGTCAGCTTTCGTTAAGAAAGTGGTCTATCATCTGAAGATC
TCTGAATTCGTGAAGCAAAGGAAGAAAGACCTGGCCGCTCGTGCTAAGGA
GTATCGCAGGAAACGCAGATTTCTGTGGCGAAATGGAGTGAAATTCAAGC
TTCCCTCCGTTCCAAAGTATCCGACTGAAGTGGAGAAAAAGAAATCGGAA
ATGAGAATGGCTACCGAACAATTTGCCCATGAATTTGCATGGTATTCCCG
GGAGATATTTCTCCATGATGACATTCAGTCACATTTCTTCCTCGCTCGTT
TTATGATGAACAATATCCACAACACAAAGACTGAAGAAAAATTGAAATGC
ATAATTGGAAGAATTGGAGATGTCGAGAGGGCAGACTTCTTCGTGGAGAT
GGAGAGGTACATTACGGCTTTATGGACTAAACTCATCAAAGAACTGCGCG
ATTTCCTGACATACGCCGATCCTGCTGCATTACTGGAAGCCTTTTGTGCT
GATTTCGACCCAAGATGCAGAAAAGTTCTCATCGATGTAAGCACAGAAAT
GAATCCCCTGGGCAAGGTGAGCACCGCACATGCAGTTTTGATCGCGCGGT
ATGGAAATCGAATTGGTTCCTTCTGTGCAAAGGCGTTCGGCAGAGCAAAT
GATGAGCTGAGCTTCAAAAAGAAAGTGTTGCTGATAAGGGGAAGCAATAT
AGAGGCTCTATGTGAGGTGTATGAGAAATTCCAAGAATCGATTGCATCAC
GTCAAAATGCGCCGGTCACGGACGTTCCAACAGAGAATCATGAAGGTGGA
AGTGCCGCTTAG

Coding sequence (CDS) from alignment at tig00000842_pilon:408185..409396-

>Ggra5476.t3 ID=Ggra5476.t3|Name=Ggra5476.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00000842_pilon:408185..409396- (Gracilaria gracilis GNS1m male)
ATGGGACAAGAGCATGTACGGTCAAACACAATTCAGGGTATACGCTGCAA
TCCACGAAGTTCCAAATTTTTTGACACAAGAAGTGGGCACGAAGTAGTGG
TCGTTCCAGATGAGGAGATGTTCGGAGTGCTTTACAGGCTTGTCAAAAAT
CTAATACTACATCGACGTGAAAGCCACATTGCCTCTTTTGTGTCGCTCAT
CTTGAACAAGAGTATCAGGGAGAATATCGCAGGAGATTTTTGTAAGAAGC
TTATCCTATTCATCGAAAAGCTTTCTAACCCTGCTATGCTGCCAAACTTA
CATAATTTCTTGTTTGAGAAGGTGGCCGATGTAGATATCACTTGGATACA
GAGGGAAATTGAGCTTCACTTTGAGGACAAACTAGCCTCTCTGAGCCCTG
AGAGCATGACGTCAGCTTTCGTTAAGAAAGTGGTCTATCATCTGAAGATC
TCTGAATTCGTGAAGCAAAGGAAGAAAGACCTGGCCGCTCGTGCTAAGGA
GTATCGCAGGAAACGCAGATTTCTGTGGCGAAATGGAGTGAAATTCAAGC
TTCCCTCCGTTCCAAAGTATCCGACTGAAGTGGAGAAAAAGAAATCGGAA
ATGAGAATGGCTACCGAACAATTTGCCCATGAATTTGCATGGTATTCCCG
GGAGATATTTCTCCATGATGACATTCAGTCACATTTCTTCCTCGCTCGTT
TTATGATGAACAATATCCACAACACAAAGACTGAAGAAAAATTGAAATGC
ATAATTGGAAGAATTGGAGATGTCGAGAGGGCAGACTTCTTCGTGGAGAT
GGAGAGGTACATTACGGCTTTATGGACTAAACTCATCAAAGAACTGCGCG
ATTTCCTGACATACGCCGATCCTGCTGCATTACTGGAAGCCTTTTGTGCT
GATTTCGACCCAAGATGCAGAAAAGTTCTCATCGATGTAAGCACAGAAAT
GAATCCCCTGGGCAAGGTGAGCACCGCACATGCAGTTTTGATCGCGCGGT
ATGGAAATCGAATTGGTTCCTTCTGTGCAAAGGCGTTCGGCAGAGCAAAT
GATGAGCTGAGCTTCAAAAAGAAAGTGTTGCTGATAAGGGGAAGCAATAT
AGAGGCTCTATGTGAGGTGTATGAGAAATTCCAAGAATCGATTGCATCAC
GTCAAAATGCGCCGGTCACGGACGTTCCAACAGAGAATCATGAAGGTGGA
AGTGCCGCTTAG