Ggra5475.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5475.t1
Unique NameGgra5475.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:406299..407060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5475Ggra5475Gracilaria gracilis GNS1m malegenetig00000842_pilon 406299..407060 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5475.t1.start1Ggra5475.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 406299..406301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5475.t1.CDS1Ggra5475.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 406299..407060 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5475.t1.exon1Ggra5475.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 406299..407060 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5475.t1.stop1Ggra5475.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 407058..407060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5475.t1Ggra5475.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 406299..407060 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5475.t1 ID=Ggra5475.t1|Name=Ggra5475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MTHVAPSGLAAVQSGLPPLPLDLSPLFADGAAVLPSQSSLLLSPLLSSSS
SSSPTFLDSMFASPVMPLNDTFAAIDTLHNTAQLYNTYTKTSPNTLSDAS
STSQSSTAVIHSRSSSPALPPPPPPPKSKPASQLALPSQAKSAKVLSPIE
KAAERRRKNRESSSRCYYNRKRIIQNLEKQLLSEKQKLTDLYDRALQLRH
DNARLKKEVVTNGYALPCSRTSRAYNNSNAFSLREYLRLLHHSTYHSASQ
GSM*
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spliced messenger RNA

>Ggra5475.t1 ID=Ggra5475.t1|Name=Ggra5475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000842_pilon:406299..407060+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCACGTCGCCCCGTCGGGCTTGGCAGCTGTGCAGTCTGGTTTGCC
CCCGCTCCCGCTTGATCTTTCGCCCTTGTTCGCGGACGGCGCCGCTGTGT
TGCCTTCACAGTCCTCATTGTTGCTAtcgccgttgttgtcgtcgtcgtcg
tcgtcgtcgCCCACCTTCTTGGACTCCATGTTTGCGTCGCCCGTCATGCC
GCTGAATGACACTTTCGCCGCCATCGATACGCTTCACAATACTGCCCAAT
TGTACAACACATATACCAAAACGTCCCCAAACACGCTTTCGGACGCTTCT
TCTACATCGCAAAGTTCTACTGCAGTCATACATTCGCGTTCATCTTCGCC
CGCTTTGCCGCCACCGCCTCCCCCTCCCAAATCAAAACCTGCGTCGCAGC
TTGCCCTTCCGTCCCAAGCCAAATCGGCAAAGGTACTGTCGCCCATTGAG
AAGGCGGCGGAACGTCGAAGAAAGAACCGCGAGAGTTCAAGTCGTTGTTA
CTACAATCGGAAACGAATCATTCAAAACCTGGAGAAACAGCTGTTGAGTG
AGAAGCAAAAGCTCACAGATTTGTATGATAGAGCTTTGCAGTTGCGTCAC
GACAATGCGCGATTGAAGAAGGAGGTCGTTACGAATGGCTACGCTTTACC
TTGTTCCCGAACTAGCCGTGCTTATAATAATTCTAATGCCTTCTCGCTTA
GAGAATATCTTCGTCTTCTACACCATTCTACATATCATAGCGCTTCACAA
GGTTCAATGTAA
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protein sequence of Ggra5475.t1

>Ggra5475.t1 ID=Ggra5475.t1|Name=Ggra5475.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MTHVAPSGLAAVQSGLPPLPLDLSPLFADGAAVLPSQSSLLLSPLLSSSS
SSSPTFLDSMFASPVMPLNDTFAAIDTLHNTAQLYNTYTKTSPNTLSDAS
STSQSSTAVIHSRSSSPALPPPPPPPKSKPASQLALPSQAKSAKVLSPIE
KAAERRRKNRESSSRCYYNRKRIIQNLEKQLLSEKQKLTDLYDRALQLRH
DNARLKKEVVTNGYALPCSRTSRAYNNSNAFSLREYLRLLHHSTYHSASQ
GSM*
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mRNA from alignment at tig00000842_pilon:406299..407060+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5475.t1 ID=Ggra5475.t1|Name=Ggra5475.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000842_pilon:406299..407060+ (Gracilaria gracilis GNS1m male)
ATGACTCACGTCGCCCCGTCGGGCTTGGCAGCTGTGCAGTCTGGTTTGCC
CCCGCTCCCGCTTGATCTTTCGCCCTTGTTCGCGGACGGCGCCGCTGTGT
TGCCTTCACAGTCCTCATTGTTGCTAtcgccgttgttgtcgtcgtcgtcg
tcgtcgtcgCCCACCTTCTTGGACTCCATGTTTGCGTCGCCCGTCATGCC
GCTGAATGACACTTTCGCCGCCATCGATACGCTTCACAATACTGCCCAAT
TGTACAACACATATACCAAAACGTCCCCAAACACGCTTTCGGACGCTTCT
TCTACATCGCAAAGTTCTACTGCAGTCATACATTCGCGTTCATCTTCGCC
CGCTTTGCCGCCACCGCCTCCCCCTCCCAAATCAAAACCTGCGTCGCAGC
TTGCCCTTCCGTCCCAAGCCAAATCGGCAAAGGTACTGTCGCCCATTGAG
AAGGCGGCGGAACGTCGAAGAAAGAACCGCGAGAGTTCAAGTCGTTGTTA
CTACAATCGGAAACGAATCATTCAAAACCTGGAGAAACAGCTGTTGAGTG
AGAAGCAAAAGCTCACAGATTTGTATGATAGAGCTTTGCAGTTGCGTCAC
GACAATGCGCGATTGAAGAAGGAGGTCGTTACGAATGGCTACGCTTTACC
TTGTTCCCGAACTAGCCGTGCTTATAATAATTCTAATGCCTTCTCGCTTA
GAGAATATCTTCGTCTTCTACACCATTCTACATATCATAGCGCTTCACAA
GGTTCAATGTAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:406299..407060+

>Ggra5475.t1 ID=Ggra5475.t1|Name=Ggra5475.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000842_pilon:406299..407060+ (Gracilaria gracilis GNS1m male)
ATGACTCACGTCGCCCCGTCGGGCTTGGCAGCTGTGCAGTCTGGTTTGCC
CCCGCTCCCGCTTGATCTTTCGCCCTTGTTCGCGGACGGCGCCGCTGTGT
TGCCTTCACAGTCCTCATTGTTGCTAtcgccgttgttgtcgtcgtcgtcg
tcgtcgtcgCCCACCTTCTTGGACTCCATGTTTGCGTCGCCCGTCATGCC
GCTGAATGACACTTTCGCCGCCATCGATACGCTTCACAATACTGCCCAAT
TGTACAACACATATACCAAAACGTCCCCAAACACGCTTTCGGACGCTTCT
TCTACATCGCAAAGTTCTACTGCAGTCATACATTCGCGTTCATCTTCGCC
CGCTTTGCCGCCACCGCCTCCCCCTCCCAAATCAAAACCTGCGTCGCAGC
TTGCCCTTCCGTCCCAAGCCAAATCGGCAAAGGTACTGTCGCCCATTGAG
AAGGCGGCGGAACGTCGAAGAAAGAACCGCGAGAGTTCAAGTCGTTGTTA
CTACAATCGGAAACGAATCATTCAAAACCTGGAGAAACAGCTGTTGAGTG
AGAAGCAAAAGCTCACAGATTTGTATGATAGAGCTTTGCAGTTGCGTCAC
GACAATGCGCGATTGAAGAAGGAGGTCGTTACGAATGGCTACGCTTTACC
TTGTTCCCGAACTAGCCGTGCTTATAATAATTCTAATGCCTTCTCGCTTA
GAGAATATCTTCGTCTTCTACACCATTCTACATATCATAGCGCTTCACAA
GGTTCAATGTAA
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