Ggra5473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5473.t1
Unique NameGgra5473.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:400036..401046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5473Ggra5473Gracilaria gracilis GNS1m malegenetig00000842_pilon 400036..401046 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5473.t1.start1Ggra5473.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 400036..400038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5473.t1.CDS1Ggra5473.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 400036..401046 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5473.t1.exon1Ggra5473.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 400036..401046 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5473.t1.stop1Ggra5473.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 401044..401046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5473.t1Ggra5473.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 400036..401046 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5473.t1 ID=Ggra5473.t1|Name=Ggra5473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MPTEARVEGAFVAPVAAPLWLLVLGGVLSLRAGLFRVAAVRAALGACCLL
LFVSALVPIGGGEGGGAWDGGARRAFVRDHARARARGAMPVVVRQITQPV
LSPLPQRPSPSPAPSPQPSPAPSPPPVAPVQPPAPLPGGGVVPAQSDFQV
TSIPPLSECGGPLFRMQIVLLLELCFEILFLFLRCFAERDDDDDSTTSGT
TDTNANVQINMRAYILIRAIYTVPVLIINVSIYWIGGGPTGACLSNYPEL
QVPFTHLLFYLFFCVIIIVMGLIRIDEWDPSTTDTSYRARTFRSDGPPTR
TTSYFRFSRPARRNRTSTSYSEPNFRCNLGCCAINL*
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spliced messenger RNA

>Ggra5473.t1 ID=Ggra5473.t1|Name=Ggra5473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000842_pilon:400036..401046+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACCGAGGCGCGCGTTGAGGGCGCGTTCGTTGCGCCCGTTGCGGC
GCCGCTTTGGCTGCTCGTGCTGGGCGGCGTGCTGTCGTTGAGGGCCGGTT
TGTTCCGCGTCGCCGCCGTGCGCGCCGCGTTGGGCGCGTGTTGTTTGTTG
CTGTTCGTGTCTGCGCTGGTGCCCATTggcggtggcgaaggcggaggcgc
gtgggatggaggcgcgcggcgCGCGTTTGTACGCGACCACGCTCGCGCTC
GCGCTCGGGGGGCAATGCCGGTCGTGGTGAGACAGATTACGCAGCCAGTG
CTGTCGCCGTTGCCGCAGCGCCCGTCGCCGTCGCCCGCGCCGAGTCCGCA
GCCGTCGCCCGCGCCTTCCCCGCCGCCTGTTGCGCCGGTGCAGCCGCCCG
CCCCTCTTCCGGGCGGTGGCGTTGTTCCGGCGCAATCTGATTTCCAGGTC
ACTTCCATCCCGCCGCTGTCCGAGTGCGGCGGGCCGTTGTTTCGCATGCA
GATTGTGTTGCTGTTGGAGCTGTGCTTTGAGATCTTGTTTTTGTTTCTTC
GATGCTTTGCCGAGCGCGATGATGATGATGATAGTACCACGTCCGGCACC
ACTGATACCAATGCCAACGTCCAGATCAACATGCGCGCGTACATTCTAAT
TCGTGCAATTTATACCGTGCCGGTGCTTATTATCAACGTTAGCATCTACT
GGATTGGTGGTGGACCTACTGGAGCTTGTCTGTCCAACTACCCGGAGCTG
CAGGTGCCGTTTACACATCTGCTCTTCTACTTGTTCTTCTGCGTCATCAT
CATCGTCATGGGTTTGATTCGCATTGATGAATGGGATCCGAGCACCACTG
ACACTTCGTATCGTGCTCGCACTTTCCGATCCGATGGGCCTCCAACTCGC
ACTACCAGTTACTTCCGCTTTTCGAGACCTGCCAGGCGCAATCGCACCTC
CACCAGTTATTCGGAACCCAACTTTCGCTGTAATCTCGGCTGTTGCGCCA
TCAATCTTTAG
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protein sequence of Ggra5473.t1

>Ggra5473.t1 ID=Ggra5473.t1|Name=Ggra5473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MPTEARVEGAFVAPVAAPLWLLVLGGVLSLRAGLFRVAAVRAALGACCLL
LFVSALVPIGGGEGGGAWDGGARRAFVRDHARARARGAMPVVVRQITQPV
LSPLPQRPSPSPAPSPQPSPAPSPPPVAPVQPPAPLPGGGVVPAQSDFQV
TSIPPLSECGGPLFRMQIVLLLELCFEILFLFLRCFAERDDDDDSTTSGT
TDTNANVQINMRAYILIRAIYTVPVLIINVSIYWIGGGPTGACLSNYPEL
QVPFTHLLFYLFFCVIIIVMGLIRIDEWDPSTTDTSYRARTFRSDGPPTR
TTSYFRFSRPARRNRTSTSYSEPNFRCNLGCCAINL*
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mRNA from alignment at tig00000842_pilon:400036..401046+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5473.t1 ID=Ggra5473.t1|Name=Ggra5473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000842_pilon:400036..401046+ (Gracilaria gracilis GNS1m male)
ATGCCGACCGAGGCGCGCGTTGAGGGCGCGTTCGTTGCGCCCGTTGCGGC
GCCGCTTTGGCTGCTCGTGCTGGGCGGCGTGCTGTCGTTGAGGGCCGGTT
TGTTCCGCGTCGCCGCCGTGCGCGCCGCGTTGGGCGCGTGTTGTTTGTTG
CTGTTCGTGTCTGCGCTGGTGCCCATTggcggtggcgaaggcggaggcgc
gtgggatggaggcgcgcggcgCGCGTTTGTACGCGACCACGCTCGCGCTC
GCGCTCGGGGGGCAATGCCGGTCGTGGTGAGACAGATTACGCAGCCAGTG
CTGTCGCCGTTGCCGCAGCGCCCGTCGCCGTCGCCCGCGCCGAGTCCGCA
GCCGTCGCCCGCGCCTTCCCCGCCGCCTGTTGCGCCGGTGCAGCCGCCCG
CCCCTCTTCCGGGCGGTGGCGTTGTTCCGGCGCAATCTGATTTCCAGGTC
ACTTCCATCCCGCCGCTGTCCGAGTGCGGCGGGCCGTTGTTTCGCATGCA
GATTGTGTTGCTGTTGGAGCTGTGCTTTGAGATCTTGTTTTTGTTTCTTC
GATGCTTTGCCGAGCGCGATGATGATGATGATAGTACCACGTCCGGCACC
ACTGATACCAATGCCAACGTCCAGATCAACATGCGCGCGTACATTCTAAT
TCGTGCAATTTATACCGTGCCGGTGCTTATTATCAACGTTAGCATCTACT
GGATTGGTGGTGGACCTACTGGAGCTTGTCTGTCCAACTACCCGGAGCTG
CAGGTGCCGTTTACACATCTGCTCTTCTACTTGTTCTTCTGCGTCATCAT
CATCGTCATGGGTTTGATTCGCATTGATGAATGGGATCCGAGCACCACTG
ACACTTCGTATCGTGCTCGCACTTTCCGATCCGATGGGCCTCCAACTCGC
ACTACCAGTTACTTCCGCTTTTCGAGACCTGCCAGGCGCAATCGCACCTC
CACCAGTTATTCGGAACCCAACTTTCGCTGTAATCTCGGCTGTTGCGCCA
TCAATCTTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:400036..401046+

>Ggra5473.t1 ID=Ggra5473.t1|Name=Ggra5473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000842_pilon:400036..401046+ (Gracilaria gracilis GNS1m male)
ATGCCGACCGAGGCGCGCGTTGAGGGCGCGTTCGTTGCGCCCGTTGCGGC
GCCGCTTTGGCTGCTCGTGCTGGGCGGCGTGCTGTCGTTGAGGGCCGGTT
TGTTCCGCGTCGCCGCCGTGCGCGCCGCGTTGGGCGCGTGTTGTTTGTTG
CTGTTCGTGTCTGCGCTGGTGCCCATTggcggtggcgaaggcggaggcgc
gtgggatggaggcgcgcggcgCGCGTTTGTACGCGACCACGCTCGCGCTC
GCGCTCGGGGGGCAATGCCGGTCGTGGTGAGACAGATTACGCAGCCAGTG
CTGTCGCCGTTGCCGCAGCGCCCGTCGCCGTCGCCCGCGCCGAGTCCGCA
GCCGTCGCCCGCGCCTTCCCCGCCGCCTGTTGCGCCGGTGCAGCCGCCCG
CCCCTCTTCCGGGCGGTGGCGTTGTTCCGGCGCAATCTGATTTCCAGGTC
ACTTCCATCCCGCCGCTGTCCGAGTGCGGCGGGCCGTTGTTTCGCATGCA
GATTGTGTTGCTGTTGGAGCTGTGCTTTGAGATCTTGTTTTTGTTTCTTC
GATGCTTTGCCGAGCGCGATGATGATGATGATAGTACCACGTCCGGCACC
ACTGATACCAATGCCAACGTCCAGATCAACATGCGCGCGTACATTCTAAT
TCGTGCAATTTATACCGTGCCGGTGCTTATTATCAACGTTAGCATCTACT
GGATTGGTGGTGGACCTACTGGAGCTTGTCTGTCCAACTACCCGGAGCTG
CAGGTGCCGTTTACACATCTGCTCTTCTACTTGTTCTTCTGCGTCATCAT
CATCGTCATGGGTTTGATTCGCATTGATGAATGGGATCCGAGCACCACTG
ACACTTCGTATCGTGCTCGCACTTTCCGATCCGATGGGCCTCCAACTCGC
ACTACCAGTTACTTCCGCTTTTCGAGACCTGCCAGGCGCAATCGCACCTC
CACCAGTTATTCGGAACCCAACTTTCGCTGTAATCTCGGCTGTTGCGCCA
TCAATCTTTAG
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