Ggra5460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5460.t1
Unique Name	Ggra5460.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	664

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:364138..366129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5460	Ggra5460	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 364138..366129 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5460.t1.stop1	Ggra5460.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 364138..364140 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5460.t1.CDS1	Ggra5460.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 364138..366129 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5460.t1.exon1	Ggra5460.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 364138..366129 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5460.t1.start1	Ggra5460.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 366127..366129 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5460.t1	Ggra5460.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 364138..366129 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:364138..366129-
coding sequence from alignment at tig00000842_pilon:364138..366129-

mRNA sequence

>Ggra5460.t1 ID=Ggra5460.t1|Name=Ggra5460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=664bp
MCDEHTMHMPPEEYEQMPLVIGTDDPLYHVGEKELWQALRTARDNAWVAD
WLFSHNSRPFHSHVSVPPEAFDNALAIHLHHDISASDQCAPVEPYCRAPP
PPPPRAADAHNKPVFSKDIDLLLVPVARMDGVTVGYTFIRGIREHSVHES
LRPSFAPPSNSAIEFGAPMFIPGRFTFHNDRRDYLMVVNGMSPHMTGVVS
MRWRTETTRDRCFFAIPKADYSANNLPRRVLTVQCNVDYARDTAPDLAVP
ASECSQQLSSDAPTDHHAQVNAAQTPAYTLPHKPLPFDFGLNAGAEPAEH
LKEQQVPDPFFKFDTQLDNTWAQGLETIGTIIPPGDANGLPELMQDIFPN
TSFEDMEQLFNAANTAWSNDNPFPISDEQPNSLSPAISSLTSSSRSTDVE
QMPRALPPSLPELDNRSSTWLVSNQVGGTPDGVGIPRRPGGNDTSSGAFS
MSALYDSLQSIERSMKGDFYSPKVRKDIMHPQTGELLSRSTGKLTAKFES
IDAFSLKLFREVAAQSYYATVMALSSDNRLISMAQPISPSPPIANGRMVA
QQTQIRQRPVFKRVAPAPLAPRPVPIVAAPVVTTQDEEGPGKSKEQAARQ
AKLEAKRIKNRMSAARSNQKRRAQLEAQRKELATLRKRVEELTTKKQGML
EENKILRRQVQES*

spliced messenger RNA

>Ggra5460.t1 ID=Ggra5460.t1|Name=Ggra5460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00000842_pilon:364138..366129- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGACGAGCACACCATGCACATGCCGCCCGAGGAGTACGAGCAGAT
GCCGCTGGTGATCGGCACGGACGACCCGCTGTACCATGTGGGCGAGAAGG
AACTGTGGCAGGCGCTTCGCACCGCGCGCGACAACGCCTGGGTGGCCGAC
TGGCTCTTCTCGCACAACTCGCGCCCGTTCCACTCGCATGTGTCCGTGCC
GCCCGAGGCGTTTGACAACGCGCTCGCCATTCACCTGCACCACGACATCT
CCGCGTCGGACCAGTGCGCCCCGGTCGAGCCGTACTGCCGCGCGCCGCCG
CCGCCGCCGCCGCGCGCCGCCGACGCCCACAACAAGCCCGTGTTCTCCAA
GGACATCGACCTGCTGCTGGTGCCCGTCGCGCGCATGGACGGCGTCACCG
TCGGCTACACCTTTATTCGCGGCATTCGCGAGCACTCTGTGCACGAGTCG
TTACGCCCGTCCTTCGCGCCGCCGTCCAACTCCGCCATCGAGTTTGGCGC
GCCCATGTTCATCCCCGGTCGCTTCACCTTCCACAACGACCGCAGGGACT
ATCTCATGGTCGTCAACGGCATGTCGCCGCACATGACCGGCGTCGTATCC
ATGCGTTGGCGCACGGAAACCACGCGCGACCGCTGCTTTTTCGCCATTCC
AAAGGCCGACTACAGCGCCAACAACCTCCCGCGCCGCGTCCTTACCGTGC
AGTGTAACGTCGACTACGCGCGCGACACCGCGCCCGACCTCGCAGTGCCT
GCGTCTGAATGCTCGCAGCAGCTCAGCAGTGACGCGCCTACCGACCATCA
TGCGCAAGTAAACGCAGCGCAGACGCCCGCGTACACGCTCCCTCACAAAC
CGCTGCCCTTCGATTTTGGCCTCAACGCTGGCGCCGAGCCCGCGGAACAC
CTCAAGGAGCAGCAGGTTCCGGACCCTTTCTTCAAGTTTGACACCCAGCT
GGACAACACCTGGGCACAGGGCTTGGAGACAATTGGCACCATCATCCCGC
CGGGTGACGCCAATGGCCTGCCGGAACTCATGCAAGACATCTTCCCCAAC
ACCAGTTTCGAGGACATGGAGCAGTTGTTCAACGCGGCAAATACAGCCTG
GTCCAACGACAACCCGTTCCCCATTTCCGACGAGCAACCCAATTCGCTGT
CGCCCGCCATTTCTTCGCTCACCTCGTCGTCACGCTCCACGGACGTGGAG
CAAATGCCGCGCGCTCTGCCGCCATCGCTTCCCGAACTTGACAATCGTTC
CAGCACGTGGCTCGTGTCCAATCAAGTAGGCGGCACGCCGGACGGAGTGG
GCATTCCACGTCGCCCCGGAGGCAACGATACTTCATCAGGTGCGTTCAGT
ATGTCTGCGTTGTATGATTCGTTGCAGTCGATAGAACGCTCCATGAAGGG
AGATTTCTATAGTCCAAAAGTGCGCAAGGATATCATGCATCCCCAAACCG
GCGAGTTGTTGTCTCGCTCTACCGGCAAACTTACTGCCAAGTTTGAATCC
ATCGACGCGTTCAGTCTTAAACTGTTCCGCGAGGTAGCTGCGCAGTCTTA
CTACGCAACTGTCATGGCGTTGTCGAGCGATAATCGATTGATTTCCATGG
CACAACCCATTTCTCCCTCGCCTCCGATAGCAAACGGGAGAATGGTTGCA
CAACAGACCCAAATAAGACAACGGCCTGTATTTAAGAGAGTTGCCCCCGC
GCCGTTGGCTCCTAGACCTGTGCCCATTGTGGCTGCCCCAGTTGTCACAA
CGCAAGATGAAGAGGGGCCCGGGAAGTCGAAGGAGCAGGCAGCCCGCCAA
GCAAAGCTGGAGGCAAAACGTATCAAGAACCGAATGAGTGCGGCCAGAAG
CAACCAAAAGCGTCGTGCTCAACTTGAAGCGCAGCGGAAAGAACTGGCAA
CGCTGCGGAAACGAGTAGAGGAATTAACAACTAAGAAGCAAGGGATGCTC
GAAGAGAACAAGATATTACGAAGACAAGTACAAGAGTCTTAA

protein sequence of Ggra5460.t1

>Ggra5460.t1 ID=Ggra5460.t1|Name=Ggra5460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=664bp
MCDEHTMHMPPEEYEQMPLVIGTDDPLYHVGEKELWQALRTARDNAWVAD
WLFSHNSRPFHSHVSVPPEAFDNALAIHLHHDISASDQCAPVEPYCRAPP
PPPPRAADAHNKPVFSKDIDLLLVPVARMDGVTVGYTFIRGIREHSVHES
LRPSFAPPSNSAIEFGAPMFIPGRFTFHNDRRDYLMVVNGMSPHMTGVVS
MRWRTETTRDRCFFAIPKADYSANNLPRRVLTVQCNVDYARDTAPDLAVP
ASECSQQLSSDAPTDHHAQVNAAQTPAYTLPHKPLPFDFGLNAGAEPAEH
LKEQQVPDPFFKFDTQLDNTWAQGLETIGTIIPPGDANGLPELMQDIFPN
TSFEDMEQLFNAANTAWSNDNPFPISDEQPNSLSPAISSLTSSSRSTDVE
QMPRALPPSLPELDNRSSTWLVSNQVGGTPDGVGIPRRPGGNDTSSGAFS
MSALYDSLQSIERSMKGDFYSPKVRKDIMHPQTGELLSRSTGKLTAKFES
IDAFSLKLFREVAAQSYYATVMALSSDNRLISMAQPISPSPPIANGRMVA
QQTQIRQRPVFKRVAPAPLAPRPVPIVAAPVVTTQDEEGPGKSKEQAARQ
AKLEAKRIKNRMSAARSNQKRRAQLEAQRKELATLRKRVEELTTKKQGML
EENKILRRQVQES*

mRNA from alignment at tig00000842_pilon:364138..366129-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5460.t1 ID=Ggra5460.t1|Name=Ggra5460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00000842_pilon:364138..366129- (Gracilaria gracilis GNS1m male)
ATGTGCGACGAGCACACCATGCACATGCCGCCCGAGGAGTACGAGCAGAT
GCCGCTGGTGATCGGCACGGACGACCCGCTGTACCATGTGGGCGAGAAGG
AACTGTGGCAGGCGCTTCGCACCGCGCGCGACAACGCCTGGGTGGCCGAC
TGGCTCTTCTCGCACAACTCGCGCCCGTTCCACTCGCATGTGTCCGTGCC
GCCCGAGGCGTTTGACAACGCGCTCGCCATTCACCTGCACCACGACATCT
CCGCGTCGGACCAGTGCGCCCCGGTCGAGCCGTACTGCCGCGCGCCGCCG
CCGCCGCCGCCGCGCGCCGCCGACGCCCACAACAAGCCCGTGTTCTCCAA
GGACATCGACCTGCTGCTGGTGCCCGTCGCGCGCATGGACGGCGTCACCG
TCGGCTACACCTTTATTCGCGGCATTCGCGAGCACTCTGTGCACGAGTCG
TTACGCCCGTCCTTCGCGCCGCCGTCCAACTCCGCCATCGAGTTTGGCGC
GCCCATGTTCATCCCCGGTCGCTTCACCTTCCACAACGACCGCAGGGACT
ATCTCATGGTCGTCAACGGCATGTCGCCGCACATGACCGGCGTCGTATCC
ATGCGTTGGCGCACGGAAACCACGCGCGACCGCTGCTTTTTCGCCATTCC
AAAGGCCGACTACAGCGCCAACAACCTCCCGCGCCGCGTCCTTACCGTGC
AGTGTAACGTCGACTACGCGCGCGACACCGCGCCCGACCTCGCAGTGCCT
GCGTCTGAATGCTCGCAGCAGCTCAGCAGTGACGCGCCTACCGACCATCA
TGCGCAAGTAAACGCAGCGCAGACGCCCGCGTACACGCTCCCTCACAAAC
CGCTGCCCTTCGATTTTGGCCTCAACGCTGGCGCCGAGCCCGCGGAACAC
CTCAAGGAGCAGCAGGTTCCGGACCCTTTCTTCAAGTTTGACACCCAGCT
GGACAACACCTGGGCACAGGGCTTGGAGACAATTGGCACCATCATCCCGC
CGGGTGACGCCAATGGCCTGCCGGAACTCATGCAAGACATCTTCCCCAAC
ACCAGTTTCGAGGACATGGAGCAGTTGTTCAACGCGGCAAATACAGCCTG
GTCCAACGACAACCCGTTCCCCATTTCCGACGAGCAACCCAATTCGCTGT
CGCCCGCCATTTCTTCGCTCACCTCGTCGTCACGCTCCACGGACGTGGAG
CAAATGCCGCGCGCTCTGCCGCCATCGCTTCCCGAACTTGACAATCGTTC
CAGCACGTGGCTCGTGTCCAATCAAGTAGGCGGCACGCCGGACGGAGTGG
GCATTCCACGTCGCCCCGGAGGCAACGATACTTCATCAGGTGCGTTCAGT
ATGTCTGCGTTGTATGATTCGTTGCAGTCGATAGAACGCTCCATGAAGGG
AGATTTCTATAGTCCAAAAGTGCGCAAGGATATCATGCATCCCCAAACCG
GCGAGTTGTTGTCTCGCTCTACCGGCAAACTTACTGCCAAGTTTGAATCC
ATCGACGCGTTCAGTCTTAAACTGTTCCGCGAGGTAGCTGCGCAGTCTTA
CTACGCAACTGTCATGGCGTTGTCGAGCGATAATCGATTGATTTCCATGG
CACAACCCATTTCTCCCTCGCCTCCGATAGCAAACGGGAGAATGGTTGCA
CAACAGACCCAAATAAGACAACGGCCTGTATTTAAGAGAGTTGCCCCCGC
GCCGTTGGCTCCTAGACCTGTGCCCATTGTGGCTGCCCCAGTTGTCACAA
CGCAAGATGAAGAGGGGCCCGGGAAGTCGAAGGAGCAGGCAGCCCGCCAA
GCAAAGCTGGAGGCAAAACGTATCAAGAACCGAATGAGTGCGGCCAGAAG
CAACCAAAAGCGTCGTGCTCAACTTGAAGCGCAGCGGAAAGAACTGGCAA
CGCTGCGGAAACGAGTAGAGGAATTAACAACTAAGAAGCAAGGGATGCTC
GAAGAGAACAAGATATTACGAAGACAAGTACAAGAGTCTTAA

Coding sequence (CDS) from alignment at tig00000842_pilon:364138..366129-

>Ggra5460.t1 ID=Ggra5460.t1|Name=Ggra5460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1992bp|location=Sequence derived from alignment at tig00000842_pilon:364138..366129- (Gracilaria gracilis GNS1m male)
ATGTGCGACGAGCACACCATGCACATGCCGCCCGAGGAGTACGAGCAGAT
GCCGCTGGTGATCGGCACGGACGACCCGCTGTACCATGTGGGCGAGAAGG
AACTGTGGCAGGCGCTTCGCACCGCGCGCGACAACGCCTGGGTGGCCGAC
TGGCTCTTCTCGCACAACTCGCGCCCGTTCCACTCGCATGTGTCCGTGCC
GCCCGAGGCGTTTGACAACGCGCTCGCCATTCACCTGCACCACGACATCT
CCGCGTCGGACCAGTGCGCCCCGGTCGAGCCGTACTGCCGCGCGCCGCCG
CCGCCGCCGCCGCGCGCCGCCGACGCCCACAACAAGCCCGTGTTCTCCAA
GGACATCGACCTGCTGCTGGTGCCCGTCGCGCGCATGGACGGCGTCACCG
TCGGCTACACCTTTATTCGCGGCATTCGCGAGCACTCTGTGCACGAGTCG
TTACGCCCGTCCTTCGCGCCGCCGTCCAACTCCGCCATCGAGTTTGGCGC
GCCCATGTTCATCCCCGGTCGCTTCACCTTCCACAACGACCGCAGGGACT
ATCTCATGGTCGTCAACGGCATGTCGCCGCACATGACCGGCGTCGTATCC
ATGCGTTGGCGCACGGAAACCACGCGCGACCGCTGCTTTTTCGCCATTCC
AAAGGCCGACTACAGCGCCAACAACCTCCCGCGCCGCGTCCTTACCGTGC
AGTGTAACGTCGACTACGCGCGCGACACCGCGCCCGACCTCGCAGTGCCT
GCGTCTGAATGCTCGCAGCAGCTCAGCAGTGACGCGCCTACCGACCATCA
TGCGCAAGTAAACGCAGCGCAGACGCCCGCGTACACGCTCCCTCACAAAC
CGCTGCCCTTCGATTTTGGCCTCAACGCTGGCGCCGAGCCCGCGGAACAC
CTCAAGGAGCAGCAGGTTCCGGACCCTTTCTTCAAGTTTGACACCCAGCT
GGACAACACCTGGGCACAGGGCTTGGAGACAATTGGCACCATCATCCCGC
CGGGTGACGCCAATGGCCTGCCGGAACTCATGCAAGACATCTTCCCCAAC
ACCAGTTTCGAGGACATGGAGCAGTTGTTCAACGCGGCAAATACAGCCTG
GTCCAACGACAACCCGTTCCCCATTTCCGACGAGCAACCCAATTCGCTGT
CGCCCGCCATTTCTTCGCTCACCTCGTCGTCACGCTCCACGGACGTGGAG
CAAATGCCGCGCGCTCTGCCGCCATCGCTTCCCGAACTTGACAATCGTTC
CAGCACGTGGCTCGTGTCCAATCAAGTAGGCGGCACGCCGGACGGAGTGG
GCATTCCACGTCGCCCCGGAGGCAACGATACTTCATCAGGTGCGTTCAGT
ATGTCTGCGTTGTATGATTCGTTGCAGTCGATAGAACGCTCCATGAAGGG
AGATTTCTATAGTCCAAAAGTGCGCAAGGATATCATGCATCCCCAAACCG
GCGAGTTGTTGTCTCGCTCTACCGGCAAACTTACTGCCAAGTTTGAATCC
ATCGACGCGTTCAGTCTTAAACTGTTCCGCGAGGTAGCTGCGCAGTCTTA
CTACGCAACTGTCATGGCGTTGTCGAGCGATAATCGATTGATTTCCATGG
CACAACCCATTTCTCCCTCGCCTCCGATAGCAAACGGGAGAATGGTTGCA
CAACAGACCCAAATAAGACAACGGCCTGTATTTAAGAGAGTTGCCCCCGC
GCCGTTGGCTCCTAGACCTGTGCCCATTGTGGCTGCCCCAGTTGTCACAA
CGCAAGATGAAGAGGGGCCCGGGAAGTCGAAGGAGCAGGCAGCCCGCCAA
GCAAAGCTGGAGGCAAAACGTATCAAGAACCGAATGAGTGCGGCCAGAAG
CAACCAAAAGCGTCGTGCTCAACTTGAAGCGCAGCGGAAAGAACTGGCAA
CGCTGCGGAAACGAGTAGAGGAATTAACAACTAAGAAGCAAGGGATGCTC
GAAGAGAACAAGATATTACGAAGACAAGTACAAGAGTCTTAA