Ggra545.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra545.t1
Unique NameGgra545.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:25070..26548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra545Ggra545Gracilaria gracilis GNS1m malegenetig00000153_pilon 25070..26548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra545.t1.stop1Ggra545.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 25070..25072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra545.t1.CDS1Ggra545.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 25070..26548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra545.t1.exon1Ggra545.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 25070..26548 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra545.t1.start1Ggra545.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 26546..26548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra545.t1Ggra545.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 25070..26548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra545.t1 ID=Ggra545.t1|Name=Ggra545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MAHPSTSFSSDGESFSLPKTHGVKRLREARDGDCKSKRHKVSQKSSPEIS
VASVKRSWEQNVQRINRKDPTFFTSKDARLMRDSTTWKEEKVYDGVKATK
DNCFALDAIYKVFFRFKERNGFEDKEGFSRISNTVSQFLRLCVAFGLCEK
HHAYKENVLFDCVANLEVVECFINFNVNCCSRSTSNRKARHLRKVCMIAP
GFMTDYGRTKDIARVSQYLDVIIRAKKNCAEYRCQSRQLIPIHGAQFIRE
CFQSSIEKLNDMVERFYSAREERTINQPVKFVSNWTPAFITFLVVCSAGQ
SPLAIAQIEVQSQEMFQRALDRASTTGYVQLPTLGGKRTQVLGHPMAAFP
AFSVKFLRFHITVIHPMITAISGRNRSTGSFRTLLVHSWTGERMKSSKIA
YEFRTFTSQTCTSASAISLRDVRSIVMNCFLSGFRAKLVMTEQSEAKFLD
AVARHINTTALQVKKCVGVLGSAEYKSTAKELIRLLGAWRTA*
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spliced messenger RNA

>Ggra545.t1 ID=Ggra545.t1|Name=Ggra545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000153_pilon:25070..26548- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGAAATCCTCGCCTGAAATTTCT
GTTGCGTCCGTAAAGCGTTCTTGGGAGCAAAACGTGCAGAGGATAAACAG
GAAGGACCCGACCTTTTTCACAAGCAAAGATGCGAGACTCATGCGCGATT
CTACGACATGGAAGGAGGAGAAGGTCTATGATGGTGTAAAAGCAACGAAG
GATAATTGTTTCGCTTTGGACGCGATATACAAGGTGTTCTTCAGGTTTAA
GGAACGAAATGGATTTGAGGATAAGGAGGGATTTTCGCGAATCTCTAACA
CAGTTTCCCAGTTCTTGAGACTGTGTGTAGCCTTCGGACTGTGCGAAAAA
CACCATGCGTACAAAGAGAATGTTCTCTTTGACTGTGTTGCCAATCTGGA
AGTGGTAGAATGTTTCATCAATTTCAATGTGAATTGTTGTTCCCGTTCGA
CTTCAAATCGGAAGGCACGACATCTTCGAAAGGTCTGCATGATCGCTCCT
GGTTTCATGACGGACTATGGCCGCACTAAAGACATCGCGAGGGTTTCGCA
GTATTTGGATGTCATCATCAGAGCGAAAAAGAACTGCGCTGAGTATCGCT
GTCAAAGCAGACAATTGATTCCTATTCATGGCGCGCAGTTTATCAGGGAG
TGTTTCCAGTCCAGTATCGAGAAACTGAATGACATGGTCGAACGCTTTTA
TTCAGCGAGAGAGGAGAGGACTATTAACCAACCAGTGAAGTTTGTTTCCA
ACTGGACGCCAGCGTTCATTACTTTTCTTGTAGTATGCTCTGCTGGACAA
AGTCCTTTGGCAATTGCACAAATTGAGGTTCAAAGTCAAGAGATGTTTCA
AAGGGCTTTGGATCGCGCATCAACTACTGGGTATGTACAACTCCCAACCT
TGGGTGGCAAGCGAACCCAAGTTTTGGGACATCCTATGGCAGCATTTCCG
GCCTTCTCTGTCAAATTCCTTCGGTTTCATATCACAGTTATCCACCCAAT
GATCACGGCCATATCAGGGAGAAATAGATCAACCGGATCCTTCAGAACTT
TGCTAGTGCACAGCTGGACTGGTGAACGAATGAAGTCTTCTAAAATTGCG
TACGAGTTCAGAACGTTTACTTCCCAAACATGCACATCTGCGTCTGCAAT
CAGTCTACGAGACGTGAGATCTATTGTTATGAATTGCTTTCTGTCGGGGT
TTCGTGCGAAATTGGTAATGACAGAACAATCAGAGGCTAAATTTCTCGAT
GCTGTGGCTCGCCATATAAATACCACCGCATTACAAGTGAAGAAGTGCGT
TGGTGTGCTGGGTTCTGCAGAGTACAAGAGCACAGCAAAAGAGCTGATAA
GACTTTTGGGAGCCTGGAGGACAGCTTGA
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protein sequence of Ggra545.t1

>Ggra545.t1 ID=Ggra545.t1|Name=Ggra545.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MAHPSTSFSSDGESFSLPKTHGVKRLREARDGDCKSKRHKVSQKSSPEIS
VASVKRSWEQNVQRINRKDPTFFTSKDARLMRDSTTWKEEKVYDGVKATK
DNCFALDAIYKVFFRFKERNGFEDKEGFSRISNTVSQFLRLCVAFGLCEK
HHAYKENVLFDCVANLEVVECFINFNVNCCSRSTSNRKARHLRKVCMIAP
GFMTDYGRTKDIARVSQYLDVIIRAKKNCAEYRCQSRQLIPIHGAQFIRE
CFQSSIEKLNDMVERFYSAREERTINQPVKFVSNWTPAFITFLVVCSAGQ
SPLAIAQIEVQSQEMFQRALDRASTTGYVQLPTLGGKRTQVLGHPMAAFP
AFSVKFLRFHITVIHPMITAISGRNRSTGSFRTLLVHSWTGERMKSSKIA
YEFRTFTSQTCTSASAISLRDVRSIVMNCFLSGFRAKLVMTEQSEAKFLD
AVARHINTTALQVKKCVGVLGSAEYKSTAKELIRLLGAWRTA*
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mRNA from alignment at tig00000153_pilon:25070..26548-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra545.t1 ID=Ggra545.t1|Name=Ggra545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000153_pilon:25070..26548- (Gracilaria gracilis GNS1m male)
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGAAATCCTCGCCTGAAATTTCT
GTTGCGTCCGTAAAGCGTTCTTGGGAGCAAAACGTGCAGAGGATAAACAG
GAAGGACCCGACCTTTTTCACAAGCAAAGATGCGAGACTCATGCGCGATT
CTACGACATGGAAGGAGGAGAAGGTCTATGATGGTGTAAAAGCAACGAAG
GATAATTGTTTCGCTTTGGACGCGATATACAAGGTGTTCTTCAGGTTTAA
GGAACGAAATGGATTTGAGGATAAGGAGGGATTTTCGCGAATCTCTAACA
CAGTTTCCCAGTTCTTGAGACTGTGTGTAGCCTTCGGACTGTGCGAAAAA
CACCATGCGTACAAAGAGAATGTTCTCTTTGACTGTGTTGCCAATCTGGA
AGTGGTAGAATGTTTCATCAATTTCAATGTGAATTGTTGTTCCCGTTCGA
CTTCAAATCGGAAGGCACGACATCTTCGAAAGGTCTGCATGATCGCTCCT
GGTTTCATGACGGACTATGGCCGCACTAAAGACATCGCGAGGGTTTCGCA
GTATTTGGATGTCATCATCAGAGCGAAAAAGAACTGCGCTGAGTATCGCT
GTCAAAGCAGACAATTGATTCCTATTCATGGCGCGCAGTTTATCAGGGAG
TGTTTCCAGTCCAGTATCGAGAAACTGAATGACATGGTCGAACGCTTTTA
TTCAGCGAGAGAGGAGAGGACTATTAACCAACCAGTGAAGTTTGTTTCCA
ACTGGACGCCAGCGTTCATTACTTTTCTTGTAGTATGCTCTGCTGGACAA
AGTCCTTTGGCAATTGCACAAATTGAGGTTCAAAGTCAAGAGATGTTTCA
AAGGGCTTTGGATCGCGCATCAACTACTGGGTATGTACAACTCCCAACCT
TGGGTGGCAAGCGAACCCAAGTTTTGGGACATCCTATGGCAGCATTTCCG
GCCTTCTCTGTCAAATTCCTTCGGTTTCATATCACAGTTATCCACCCAAT
GATCACGGCCATATCAGGGAGAAATAGATCAACCGGATCCTTCAGAACTT
TGCTAGTGCACAGCTGGACTGGTGAACGAATGAAGTCTTCTAAAATTGCG
TACGAGTTCAGAACGTTTACTTCCCAAACATGCACATCTGCGTCTGCAAT
CAGTCTACGAGACGTGAGATCTATTGTTATGAATTGCTTTCTGTCGGGGT
TTCGTGCGAAATTGGTAATGACAGAACAATCAGAGGCTAAATTTCTCGAT
GCTGTGGCTCGCCATATAAATACCACCGCATTACAAGTGAAGAAGTGCGT
TGGTGTGCTGGGTTCTGCAGAGTACAAGAGCACAGCAAAAGAGCTGATAA
GACTTTTGGGAGCCTGGAGGACAGCTTGA
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Coding sequence (CDS) from alignment at tig00000153_pilon:25070..26548-

>Ggra545.t1 ID=Ggra545.t1|Name=Ggra545.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000153_pilon:25070..26548- (Gracilaria gracilis GNS1m male)
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGAAATCCTCGCCTGAAATTTCT
GTTGCGTCCGTAAAGCGTTCTTGGGAGCAAAACGTGCAGAGGATAAACAG
GAAGGACCCGACCTTTTTCACAAGCAAAGATGCGAGACTCATGCGCGATT
CTACGACATGGAAGGAGGAGAAGGTCTATGATGGTGTAAAAGCAACGAAG
GATAATTGTTTCGCTTTGGACGCGATATACAAGGTGTTCTTCAGGTTTAA
GGAACGAAATGGATTTGAGGATAAGGAGGGATTTTCGCGAATCTCTAACA
CAGTTTCCCAGTTCTTGAGACTGTGTGTAGCCTTCGGACTGTGCGAAAAA
CACCATGCGTACAAAGAGAATGTTCTCTTTGACTGTGTTGCCAATCTGGA
AGTGGTAGAATGTTTCATCAATTTCAATGTGAATTGTTGTTCCCGTTCGA
CTTCAAATCGGAAGGCACGACATCTTCGAAAGGTCTGCATGATCGCTCCT
GGTTTCATGACGGACTATGGCCGCACTAAAGACATCGCGAGGGTTTCGCA
GTATTTGGATGTCATCATCAGAGCGAAAAAGAACTGCGCTGAGTATCGCT
GTCAAAGCAGACAATTGATTCCTATTCATGGCGCGCAGTTTATCAGGGAG
TGTTTCCAGTCCAGTATCGAGAAACTGAATGACATGGTCGAACGCTTTTA
TTCAGCGAGAGAGGAGAGGACTATTAACCAACCAGTGAAGTTTGTTTCCA
ACTGGACGCCAGCGTTCATTACTTTTCTTGTAGTATGCTCTGCTGGACAA
AGTCCTTTGGCAATTGCACAAATTGAGGTTCAAAGTCAAGAGATGTTTCA
AAGGGCTTTGGATCGCGCATCAACTACTGGGTATGTACAACTCCCAACCT
TGGGTGGCAAGCGAACCCAAGTTTTGGGACATCCTATGGCAGCATTTCCG
GCCTTCTCTGTCAAATTCCTTCGGTTTCATATCACAGTTATCCACCCAAT
GATCACGGCCATATCAGGGAGAAATAGATCAACCGGATCCTTCAGAACTT
TGCTAGTGCACAGCTGGACTGGTGAACGAATGAAGTCTTCTAAAATTGCG
TACGAGTTCAGAACGTTTACTTCCCAAACATGCACATCTGCGTCTGCAAT
CAGTCTACGAGACGTGAGATCTATTGTTATGAATTGCTTTCTGTCGGGGT
TTCGTGCGAAATTGGTAATGACAGAACAATCAGAGGCTAAATTTCTCGAT
GCTGTGGCTCGCCATATAAATACCACCGCATTACAAGTGAAGAAGTGCGT
TGGTGTGCTGGGTTCTGCAGAGTACAAGAGCACAGCAAAAGAGCTGATAA
GACTTTTGGGAGCCTGGAGGACAGCTTGA
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