Ggra5445.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5445.t1
Unique Name	Ggra5445.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:292049..293944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5445	Ggra5445	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 292049..293944 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5445.t1.stop1	Ggra5445.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 292049..292051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5445.t1.CDS1	Ggra5445.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 292049..293944 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5445.t1.exon1	Ggra5445.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 292049..293944 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5445.t1.start1	Ggra5445.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 293942..293944 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5445.t1	Ggra5445.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 292049..293944 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:292049..293944-
coding sequence from alignment at tig00000842_pilon:292049..293944-

mRNA sequence

>Ggra5445.t1 ID=Ggra5445.t1|Name=Ggra5445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=632bp
MPPPPPPPPSLPPQPPPSPPRAVDVLGDDLHKALALLRRERLIADFMLRP
PRAPADIQLLTASRPSFILSTDEEQRGAVNGKIAMHYLGIPLFSERAGFS
GGLVVTTYTARTHPLHAPAVMADVRVGRYVRHNATGEWCIITRNDRDGVT
RLQYVRVMHAQRERICLTCKSDLFETGDIKGSVMFQCHDREWRFCSSCGS
SLPGVCLCVPSSQSPLLGTLTGLNQAVWRVMCEGSASWQGKVRVTVVNNL
TSPHFDAFMDVTSSYNPSIDNLLASRMKRLAIMEKVAASTCIPAPIAMLE
DDQKAYEQLQTHRTPNPNHASSFPSQQPTAFPAAPQSPSSSKHATFSPQR
PPLLSSPPSKLPPDISLLASPKSAPLASLSNHSALHASPPTFPFFEPDHM
EVADHFLVPPNVPISEPLMEQPMLPADPSTLPAGIETCLHGMDFEDDWCS
YIASDQDARSVSSTLSNAGSDVAPLPDSVPCVEDAIEMIEPENDFEMAPN
APKRKQQLQPQIAKKQRPLAPQPTLKPKPLAPRPAGMSVTDGFIWQIGAF
AGNEAVLSARLEAMEKERKAEERRKKNRQAAARSNARKKDIMDGIRAEIR
QQRKREAELREREARLRSENDQLRRHATARQ*

spliced messenger RNA

>Ggra5445.t1 ID=Ggra5445.t1|Name=Ggra5445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000842_pilon:292049..293944- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCTCCACCGCCTCCGCCGCCGTCGTTGCCGCCGCAGCCGCCTCC
GTCACCGCCTCGCGCCGTCGACGTACTCGGTGACGACTTGCACAAGGCGC
TCGCGCTGCTAAGGCGCGAGCGCCTTATCGCCGACTTTATGCTCCGTCCA
CCCAGGGCCCCCGCCGACATTCAGCTGCTCACCGCGTCGCGCCCGTCCTT
CATTCTGTCCACCGACGAGGAGCAGCGCGGCGCCGTCAACGGCAAGATCG
CCATGCACTACTTGGGTATTCCGCTCTTCTCCGAGCGCGCCGGCTTCTCG
GGCGGGCTCGTCGTCACCACCTACACGGCGCGCACTCACCCGCTGCACGC
ACCCGCCGTCATGGCCGACGTGCGAGTGGGCCGCTACGTGCGCCATAACG
CCACTGGGGAGTGGTGCATCATCACTCGCAACGACCGCGACGGCGTTACC
CGACTGCAGTACGTGCGTGTCATGCACGCTCAGCGCGAACGCATCTGCCT
TACCTGCAAGTCCGACCTCTTCGAGACGGGCGACATCAAGGGCAGCGTCA
TGTTTCAGTGTCATGACCGCGAGTGGCGCTTCTGCTCCAGTTGCGGCTCG
TCGCTGCCGGGCGTCTGCTTATGTGTGCCCTCTTCCCAATCTCCGTTGCT
CGGCACCCTCACGGGTTTGAACCAGGCCGTGTGGCGCGTCATGTGTGAGG
GCTCTGCGTCCTGGCAAGGTAAAGTTCGTGTCACTGTAGTTAATAATCTC
ACCAGCCCCCACTTTGATGCTTTTATGGACGTCACCAGCTCTTACAACCC
TTCGATAGACAACCTTCTTGCCTCCAGAATGAAACGCCTCGCCATCATGG
AAAAGGTGGCCGCTTCCACCTGCATCCCCGCCCCGATCGCCATGCTTGAA
GACGATCAAAAGGCCTACGAGCAACTACAGACGCATCGCACTCCCAACCC
CAACCACGCGTCGTCGTTTCCTTCTCAACAACCAACTGCGTTCCCCGCCG
CACCGCAGTCCCCCTCTTCGTCCAAGCACGCCACCTTTTCGCCACAACGA
CCGCCTTTGTTGTCGTCCCCGCCGTCGAAGCTCCCCCCAGATATATCCCT
TTTGGCCAGTCCAAAATCCGCACCGCTGGCGAGCCTTTCAAACCACTCCG
CTCTGCACGCTTCGCCTCCTACCTTTCCTTTCTTCGAACCGGATCATATG
GAAGTTGCCGACCACTTTCTCGTCCCGCCAAACGTGCCCATTTCGGAGCC
GCTCATGGAACAGCCCATGTTACCTGCCGATCCCAGCACTTTGCCGGCTG
GTATCGAGACGTGCTTGCACGGCATGGACTTTGAGGACGATTGGTGCTCG
TATATTGCTAGTGACCAGGATGCGCGCTCCGTTTCTTCCACTCTTTCGAA
TGCTGGCTCAGACGTTGCTCCGCTGCCCGATAGCGTTCCCTGCGTAGAAG
ACGCCATCGAGATGATCGAGCCAGAAAACGACTTTGAGATGGCGCCAAAT
GCGCCCAAGCGCAAACAGCAGCTCCAGCCGCAGATAGCCAAGAAGCAAAG
ACCGCTTGCGCCGCAACCGACATTGAAGCCGAAACCGTTGGCACCGCGAC
CTGCGGGGATGAGCGTTACTGACGGCTTCATCTGGCAGATTGGTGCGTTT
GCCGGCAATGAGGCAGTTCTTTCTGCGAGGCTGGAGGCTATGGAGAAGGA
ACGCAAAGCGGAGGAAAGGCGTAAGAAAAACCGGCAGGCTGCCGCTCGGT
CTAATGCTCGAAAGAAGGATATCATGGACGGTATCCGTGCCGAGATTCGG
CAGCAGAGGAAGAGAGAGGCCGAACTGAGAGAGCGAGAAGCAAGGCTTCG
CAGCGAGAACGATCAGCTGCGGAGACATGCTACGGCCAGGCAATAA

protein sequence of Ggra5445.t1

>Ggra5445.t1 ID=Ggra5445.t1|Name=Ggra5445.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=632bp
MPPPPPPPPSLPPQPPPSPPRAVDVLGDDLHKALALLRRERLIADFMLRP
PRAPADIQLLTASRPSFILSTDEEQRGAVNGKIAMHYLGIPLFSERAGFS
GGLVVTTYTARTHPLHAPAVMADVRVGRYVRHNATGEWCIITRNDRDGVT
RLQYVRVMHAQRERICLTCKSDLFETGDIKGSVMFQCHDREWRFCSSCGS
SLPGVCLCVPSSQSPLLGTLTGLNQAVWRVMCEGSASWQGKVRVTVVNNL
TSPHFDAFMDVTSSYNPSIDNLLASRMKRLAIMEKVAASTCIPAPIAMLE
DDQKAYEQLQTHRTPNPNHASSFPSQQPTAFPAAPQSPSSSKHATFSPQR
PPLLSSPPSKLPPDISLLASPKSAPLASLSNHSALHASPPTFPFFEPDHM
EVADHFLVPPNVPISEPLMEQPMLPADPSTLPAGIETCLHGMDFEDDWCS
YIASDQDARSVSSTLSNAGSDVAPLPDSVPCVEDAIEMIEPENDFEMAPN
APKRKQQLQPQIAKKQRPLAPQPTLKPKPLAPRPAGMSVTDGFIWQIGAF
AGNEAVLSARLEAMEKERKAEERRKKNRQAAARSNARKKDIMDGIRAEIR
QQRKREAELREREARLRSENDQLRRHATARQ*

mRNA from alignment at tig00000842_pilon:292049..293944-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5445.t1 ID=Ggra5445.t1|Name=Ggra5445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00000842_pilon:292049..293944- (Gracilaria gracilis GNS1m male)
ATGCCGCCTCCACCGCCTCCGCCGCCGTCGTTGCCGCCGCAGCCGCCTCC
GTCACCGCCTCGCGCCGTCGACGTACTCGGTGACGACTTGCACAAGGCGC
TCGCGCTGCTAAGGCGCGAGCGCCTTATCGCCGACTTTATGCTCCGTCCA
CCCAGGGCCCCCGCCGACATTCAGCTGCTCACCGCGTCGCGCCCGTCCTT
CATTCTGTCCACCGACGAGGAGCAGCGCGGCGCCGTCAACGGCAAGATCG
CCATGCACTACTTGGGTATTCCGCTCTTCTCCGAGCGCGCCGGCTTCTCG
GGCGGGCTCGTCGTCACCACCTACACGGCGCGCACTCACCCGCTGCACGC
ACCCGCCGTCATGGCCGACGTGCGAGTGGGCCGCTACGTGCGCCATAACG
CCACTGGGGAGTGGTGCATCATCACTCGCAACGACCGCGACGGCGTTACC
CGACTGCAGTACGTGCGTGTCATGCACGCTCAGCGCGAACGCATCTGCCT
TACCTGCAAGTCCGACCTCTTCGAGACGGGCGACATCAAGGGCAGCGTCA
TGTTTCAGTGTCATGACCGCGAGTGGCGCTTCTGCTCCAGTTGCGGCTCG
TCGCTGCCGGGCGTCTGCTTATGTGTGCCCTCTTCCCAATCTCCGTTGCT
CGGCACCCTCACGGGTTTGAACCAGGCCGTGTGGCGCGTCATGTGTGAGG
GCTCTGCGTCCTGGCAAGGTAAAGTTCGTGTCACTGTAGTTAATAATCTC
ACCAGCCCCCACTTTGATGCTTTTATGGACGTCACCAGCTCTTACAACCC
TTCGATAGACAACCTTCTTGCCTCCAGAATGAAACGCCTCGCCATCATGG
AAAAGGTGGCCGCTTCCACCTGCATCCCCGCCCCGATCGCCATGCTTGAA
GACGATCAAAAGGCCTACGAGCAACTACAGACGCATCGCACTCCCAACCC
CAACCACGCGTCGTCGTTTCCTTCTCAACAACCAACTGCGTTCCCCGCCG
CACCGCAGTCCCCCTCTTCGTCCAAGCACGCCACCTTTTCGCCACAACGA
CCGCCTTTGTTGTCGTCCCCGCCGTCGAAGCTCCCCCCAGATATATCCCT
TTTGGCCAGTCCAAAATCCGCACCGCTGGCGAGCCTTTCAAACCACTCCG
CTCTGCACGCTTCGCCTCCTACCTTTCCTTTCTTCGAACCGGATCATATG
GAAGTTGCCGACCACTTTCTCGTCCCGCCAAACGTGCCCATTTCGGAGCC
GCTCATGGAACAGCCCATGTTACCTGCCGATCCCAGCACTTTGCCGGCTG
GTATCGAGACGTGCTTGCACGGCATGGACTTTGAGGACGATTGGTGCTCG
TATATTGCTAGTGACCAGGATGCGCGCTCCGTTTCTTCCACTCTTTCGAA
TGCTGGCTCAGACGTTGCTCCGCTGCCCGATAGCGTTCCCTGCGTAGAAG
ACGCCATCGAGATGATCGAGCCAGAAAACGACTTTGAGATGGCGCCAAAT
GCGCCCAAGCGCAAACAGCAGCTCCAGCCGCAGATAGCCAAGAAGCAAAG
ACCGCTTGCGCCGCAACCGACATTGAAGCCGAAACCGTTGGCACCGCGAC
CTGCGGGGATGAGCGTTACTGACGGCTTCATCTGGCAGATTGGTGCGTTT
GCCGGCAATGAGGCAGTTCTTTCTGCGAGGCTGGAGGCTATGGAGAAGGA
ACGCAAAGCGGAGGAAAGGCGTAAGAAAAACCGGCAGGCTGCCGCTCGGT
CTAATGCTCGAAAGAAGGATATCATGGACGGTATCCGTGCCGAGATTCGG
CAGCAGAGGAAGAGAGAGGCCGAACTGAGAGAGCGAGAAGCAAGGCTTCG
CAGCGAGAACGATCAGCTGCGGAGACATGCTACGGCCAGGCAATAA

Coding sequence (CDS) from alignment at tig00000842_pilon:292049..293944-

>Ggra5445.t1 ID=Ggra5445.t1|Name=Ggra5445.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1896bp|location=Sequence derived from alignment at tig00000842_pilon:292049..293944- (Gracilaria gracilis GNS1m male)
ATGCCGCCTCCACCGCCTCCGCCGCCGTCGTTGCCGCCGCAGCCGCCTCC
GTCACCGCCTCGCGCCGTCGACGTACTCGGTGACGACTTGCACAAGGCGC
TCGCGCTGCTAAGGCGCGAGCGCCTTATCGCCGACTTTATGCTCCGTCCA
CCCAGGGCCCCCGCCGACATTCAGCTGCTCACCGCGTCGCGCCCGTCCTT
CATTCTGTCCACCGACGAGGAGCAGCGCGGCGCCGTCAACGGCAAGATCG
CCATGCACTACTTGGGTATTCCGCTCTTCTCCGAGCGCGCCGGCTTCTCG
GGCGGGCTCGTCGTCACCACCTACACGGCGCGCACTCACCCGCTGCACGC
ACCCGCCGTCATGGCCGACGTGCGAGTGGGCCGCTACGTGCGCCATAACG
CCACTGGGGAGTGGTGCATCATCACTCGCAACGACCGCGACGGCGTTACC
CGACTGCAGTACGTGCGTGTCATGCACGCTCAGCGCGAACGCATCTGCCT
TACCTGCAAGTCCGACCTCTTCGAGACGGGCGACATCAAGGGCAGCGTCA
TGTTTCAGTGTCATGACCGCGAGTGGCGCTTCTGCTCCAGTTGCGGCTCG
TCGCTGCCGGGCGTCTGCTTATGTGTGCCCTCTTCCCAATCTCCGTTGCT
CGGCACCCTCACGGGTTTGAACCAGGCCGTGTGGCGCGTCATGTGTGAGG
GCTCTGCGTCCTGGCAAGGTAAAGTTCGTGTCACTGTAGTTAATAATCTC
ACCAGCCCCCACTTTGATGCTTTTATGGACGTCACCAGCTCTTACAACCC
TTCGATAGACAACCTTCTTGCCTCCAGAATGAAACGCCTCGCCATCATGG
AAAAGGTGGCCGCTTCCACCTGCATCCCCGCCCCGATCGCCATGCTTGAA
GACGATCAAAAGGCCTACGAGCAACTACAGACGCATCGCACTCCCAACCC
CAACCACGCGTCGTCGTTTCCTTCTCAACAACCAACTGCGTTCCCCGCCG
CACCGCAGTCCCCCTCTTCGTCCAAGCACGCCACCTTTTCGCCACAACGA
CCGCCTTTGTTGTCGTCCCCGCCGTCGAAGCTCCCCCCAGATATATCCCT
TTTGGCCAGTCCAAAATCCGCACCGCTGGCGAGCCTTTCAAACCACTCCG
CTCTGCACGCTTCGCCTCCTACCTTTCCTTTCTTCGAACCGGATCATATG
GAAGTTGCCGACCACTTTCTCGTCCCGCCAAACGTGCCCATTTCGGAGCC
GCTCATGGAACAGCCCATGTTACCTGCCGATCCCAGCACTTTGCCGGCTG
GTATCGAGACGTGCTTGCACGGCATGGACTTTGAGGACGATTGGTGCTCG
TATATTGCTAGTGACCAGGATGCGCGCTCCGTTTCTTCCACTCTTTCGAA
TGCTGGCTCAGACGTTGCTCCGCTGCCCGATAGCGTTCCCTGCGTAGAAG
ACGCCATCGAGATGATCGAGCCAGAAAACGACTTTGAGATGGCGCCAAAT
GCGCCCAAGCGCAAACAGCAGCTCCAGCCGCAGATAGCCAAGAAGCAAAG
ACCGCTTGCGCCGCAACCGACATTGAAGCCGAAACCGTTGGCACCGCGAC
CTGCGGGGATGAGCGTTACTGACGGCTTCATCTGGCAGATTGGTGCGTTT
GCCGGCAATGAGGCAGTTCTTTCTGCGAGGCTGGAGGCTATGGAGAAGGA
ACGCAAAGCGGAGGAAAGGCGTAAGAAAAACCGGCAGGCTGCCGCTCGGT
CTAATGCTCGAAAGAAGGATATCATGGACGGTATCCGTGCCGAGATTCGG
CAGCAGAGGAAGAGAGAGGCCGAACTGAGAGAGCGAGAAGCAAGGCTTCG
CAGCGAGAACGATCAGCTGCGGAGACATGCTACGGCCAGGCAATAA