Ggra5436.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5436.t1
Unique NameGgra5436.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:183481..186634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5436Ggra5436Gracilaria gracilis GNS1m malegenetig00000842_pilon 183481..186634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1Ggra5436.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 183481..186634 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1.start1Ggra5436.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 183481..183483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1.CDS1Ggra5436.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 183481..183617 +
Ggra5436.t1.CDS2Ggra5436.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 183727..183934 +
Ggra5436.t1.CDS3Ggra5436.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 184175..184701 +
Ggra5436.t1.CDS4Ggra5436.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000842_pilon 186391..186634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1.exon1Ggra5436.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 183481..183617 +
Ggra5436.t1.exon2Ggra5436.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 183727..183934 +
Ggra5436.t1.exon3Ggra5436.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 184175..184701 +
Ggra5436.t1.exon4Ggra5436.t1.exon4Gracilaria gracilis GNS1m maleexontig00000842_pilon 186391..186634 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1.intron1Ggra5436.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 183618..183726 +
Ggra5436.t1.intron2Ggra5436.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 183935..184174 +
Ggra5436.t1.intron3Ggra5436.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000842_pilon 184702..186390 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5436.t1.stop1Ggra5436.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 186632..186634 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5436.t1 ID=Ggra5436.t1|Name=Ggra5436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MWFTLRRAATRACTSMLLHGGDSGRNRQQPVEARDASVIGVDLHGRLSAW
VWVTSITRKWATVWTIGFEDDDAVCAQKIEALVHGVLTVEAVAIEGMWEP
KDLADEVVFFTLGNLQQKNSPPAVAARCTAAVNIAHPVVVVRAAAYATCV
AYGAGLAVPPAAPLAAAVTAVLQAAASHQIFVAAAGVVFALRRLVFISVV
MHFAVMLACLAVVLAQHAIAAPRAPRNCPLMMPPPSVRSLAQPRSVGALF
SDAYIKSHLVCFYGEGCAGSLLSTSWAATAVYCLFKPTSNSTHDVVLMDA
YSSQPYGSALPGATDESPLEQESHESCLAVVVTGVDNPLYTMSQGAADWG
ADGVEDLIPSSSPISAVESSL*
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spliced messenger RNA

>Ggra5436.t1 ID=Ggra5436.t1|Name=Ggra5436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000842_pilon:183481..186634+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTCACATTGCGGCGTGCTGCGACACGTGCGTGTACATCCATGTT
GCTCCATGGTGGAGACTCTGGAAGAAACAGACAGCAGCCAGTAGAGGCCC
GTGACGCGAGTGTGATTGGCGTTGATCTGCATGGGCGCCTCTCCGCGTGG
GTCTGGGTAACATCGATCACGAGGAAATGGGCGACTGTCTGGACAATTGG
CTTTGAAGACGATGACGCGGTGTGTGCTCAGAAGATCGAGGCTCTGGTGC
ATGGCGTACTCACAGTTGAAGCGGTTGCAATCGAGGGCATGTGGGAACCA
AAAGACCTCGCGGACGAAGTGGTGTTCTTCACTCTTGGCAATCTGCAGCA
GAAGAACTCACCCCCAGCCGTCGCAGCTCGTTGCACCGCTGCCGTCAACA
TCGCTCATCCCGTCGTCGTCGTGCGCGCAGCAGCGTACGCCACCTGCGTA
GCTTATGGCGCGGGGCTCGCCGTCCCTCCCGCCGCTCCGCTCGCTGCCGC
CGTCACTGCCGTTCTCCAAGCCGCCGCCTCACATCAGATCTTCGTCGCAG
CTGCTGGCGTCGTCTTCGCACTGCGTCGCCTCGTATTTATCTCCGTCGTC
ATGCACTTCGCTGTTATGCTTGCGTGCCTCGCAGTCGTGCTGGCACAGCA
CGCCATCGCCGCGCCGCGCGCGCCGCGAAATTGCCCGCTCATGATGCCGC
CGCCATCCGTGCGCTCGCTTGCGCAGCCGCGATCCGTGGGAGCCTTGTTT
TCGGACGCCTACATCAAGTCGCACCTCGTGTGCTTCTACGGCGAGGGCTG
CGCCGGCTCGCTGCTGTCCACGAGCTGGGCTGCCACCGCCGTGTACTGTC
TTTTCAAGCCCACATCCAATTCCACGCATGATGTGGTGCTCATGGACGCG
TACTCCTCGCAGCCGTACGGCAGCGCGCTGCCGGGCGCCACTGACGAGTC
GCCCCTGGAACAGGAAAGCCACGAATCGTGCTTGGCCGTGGTGGTCACCG
GCGTGGATAACCCGCTGTACACCATGTCGCAGGGCGCGGCCGATTGGGGC
GCCGATGGTGTGGAGGACCTCATCCCGTCTTCGAGCCCAATCAGCGCAGT
AGAAAGTTCGCTGTAG
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protein sequence of Ggra5436.t1

>Ggra5436.t1 ID=Ggra5436.t1|Name=Ggra5436.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MWFTLRRAATRACTSMLLHGGDSGRNRQQPVEARDASVIGVDLHGRLSAW
VWVTSITRKWATVWTIGFEDDDAVCAQKIEALVHGVLTVEAVAIEGMWEP
KDLADEVVFFTLGNLQQKNSPPAVAARCTAAVNIAHPVVVVRAAAYATCV
AYGAGLAVPPAAPLAAAVTAVLQAAASHQIFVAAAGVVFALRRLVFISVV
MHFAVMLACLAVVLAQHAIAAPRAPRNCPLMMPPPSVRSLAQPRSVGALF
SDAYIKSHLVCFYGEGCAGSLLSTSWAATAVYCLFKPTSNSTHDVVLMDA
YSSQPYGSALPGATDESPLEQESHESCLAVVVTGVDNPLYTMSQGAADWG
ADGVEDLIPSSSPISAVESSL*
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mRNA from alignment at tig00000842_pilon:183481..186634+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5436.t1 ID=Ggra5436.t1|Name=Ggra5436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3154bp|location=Sequence derived from alignment at tig00000842_pilon:183481..186634+ (Gracilaria gracilis GNS1m male)
ATGTGGTTCACATTGCGGCGTGCTGCGACACGTGCGTGTACATCCATGTT
GCTCCATGGTGGAGACTCTGGAAGAAACAGACAGCAGCCAGTAGAGGCCC
GTGACGCGAGTGTGATTGGCGTTGATCTGCATGGGCGGTACGACGCggtg
gtggggggggggggggggCAGCCGGCGCCTGTTGATGCGCGCATGTAGTC
ATTGGCAGTGGCGCTGTTTGATGTCCGCAACGCGTCCGCACTGCAGCCTC
TCCGCGTGGGTCTGGGTAACATCGATCACGAGGAAATGGGCGACTGTCTG
GACAATTGGCTTTGAAGACGATGACGCGGTGTGTGCTCAGAAGATCGAGG
CTCTGGTGCATGGCGTACTCACAGTTGAAGCGGTTGCAATCGAGGGCATG
TGGGAACCAAAAGACCTCGCGGACGAAGTGGTGTTCTTCACTCTTGGCAA
TCTGGTTCGTTCACACTGGGTCACGTGTATAACGGGACAAAGCATTGTTA
GATCATGCCCTTTGAGCGCGCACCCCGCACGTCCCAAAGCACGTGTACCA
ACGCTACTTGGGACACACAAGCGCTGCAGTCTGCTGCAGCCGGCACCTCA
TCAGCTGCGCATCGCCTCCGCTCTCACCCTCGTTTCCTTCTTTTCTTTGT
TGCTCTCATTCATTCTCCTACACTCTTGACGCGCGCCCCCGTAGCAGCAG
AAGAACTCACCCCCAGCCGTCGCAGCTCGTTGCACCGCTGCCGTCAACAT
CGCTCATCCCGTCGTCGTCGTGCGCGCAGCAGCGTACGCCACCTGCGTAG
CTTATGGCGCGGGGCTCGCCGTCCCTCCCGCCGCTCCGCTCGCTGCCGCC
GTCACTGCCGTTCTCCAAGCCGCCGCCTCACATCAGATCTTCGTCGCAGC
TGCTGGCGTCGTCTTCGCACTGCGTCGCCTCGTATTTATCTCCGTCGTCA
TGCACTTCGCTGTTATGCTTGCGTGCCTCGCAGTCGTGCTGGCACAGCAC
GCCATCGCCGCGCCGCGCGCGCCGCGAAATTGCCCGCTCATGATGCCGCC
GCCATCCGTGCGCTCGCTTGCGCAGCCGCGATCCGTGGGAGCCTTGTTTT
CGGACGCCTACATCAAGTCGCACCTCGTGTGCTTCTACGGCGAGGGCTGC
GCCGGCTCGCTGCTGTCCACGAGCTGGGCTGCCACCGCCGTGTACTGTCT
TTTCAAGCCCACATCCAATTCGTACGTCTCCAGCCAGACCTCTAGCTTCC
GCAAGCTGGTGTCCATCacggcggctgcctgggaagccagcgctagagca
ttacggagaggtcacggttgacgacgagcgcgggggtgtagaagacgttg
cgcttctcgtacagcgccttggtcttgcCCTCGCACAGCTCAGTGTACCG
CTAGTGGCGCGCCTTTTCCTCATTGGGGGGGCGTTGGCGTGGACGACGAC
TACATTTTGCAACGACTCGGcggctggcaccggcaggttggtgtggtcat
cttaaccagtcagtgcgccgtaatgtgcagcgtgagctgtatcgtgtgcg
ggatggtgagcggcagaaacagcagcgacggcatggcctacacgccttcg
tggagcgctatctcacggacgcgccgcgaccacccactgtcgccgccatt
atgtcgccagcagccgcttgcacgagctgcgtcgctgctttccgcgcgcg
ccgagttttggcgccatcacccaaagccgcgcgcgcaggaagccaaatag
ctgcgcaggTAcgtcccgcgccatacacgtggccactatgtgcaccagca
tcacacacggcgcCACCATGTGAATGCGCGACGCGGCTGCGTCAACGCGG
GGAAAGTGTGCGCACAGTTCGCAGCAGAGGCGGATATGGTGGGGGCTCTC
AAAAAGCTTTCGTTCCCGCGGTTTGCGCGCAGAACGAATCGCAACTTACA
AAAGAGCGATGAGCAGTGATTTGAATGTGGCGCGGCAGCTGCCGCAGCCG
CCATCGTTGCTGACGGTGCCGCTGGCGCGCACGTCACTGTCGCTGCAGCC
GGCGCGCCTCATCAAGACGTATCTGTGTCCGCTGCACCTGCCGCCCTCCA
CATTCATGGGCACCACGATCAGCGCACTGCTGCTGGGCCTCGAGCAACAG
ACCACCTTCTTCGACTTCAAGCTGGACATCTTCGCTTGGAGGCGCGCGAG
GCCATCCCCACCGAGACCTTCAAgattgtgtaccccacaccgccctcccc
gtcgctgtgcgccctcgtgcagaactacgagcaactggtacagcactacc
acctgccgctccgtcttttctccttcccgggcggccatttcgcattgccc
acagatgccagctcgcaccgtgccgccacctcactgcagctgcgttccaa
attggccgccggcattaccgttaccgaggccatgcggcacttcaacgacc
cagacggtgccgtcttccagttggtgcaaacTCACGTGCTCACGTCAGTG
GTGCCGATGCTGGGCGCCATGCAGGTCGccgcgaacgccgcgcccactgc
gcccgcgcacgcgccgccgccACTTTTCTCTTCGTCATCGTCCAGCCCCA
CCCGTCGTCGACGCGGTAGTCGCACCGCCGCTGACTCCAACCTGCAGTGC
CACATATTTCGCCAGTTCTACTTGCGCCGCGAAAACCCCCGCCTGCACCA
GCGTATCCATACTGTCGAACACTCCTTCTCATGCCGCTACTGTTTGCATC
CATTACCTTTGCAGGGTGCGCTGCGCAACCACGAGAACATACACGTGCAA
AATGGCGACACGGCGATTTCTGACAGCTCTATGAACACTTTTTCTGTCGC
CGAGCcgtagccgtcgtcgtcgtcgtcggcgCCACCAGCGCGGCCACACG
CGCTGTACAGCACGCATGATGTGGTGCTCATGGACGCGTACTCCTCGCAG
CCGTACGGCAGCGCGCTGCCGGGCGCCACTGACGAGTCGCCCCTGGAACA
GGAAAGCCACGAATCGTGCTTGGCCGTGGTGGTCACCGGCGTGGATAACC
CGCTGTACACCATGTCGCAGGGCGCGGCCGATTGGGGCGCCGATGGTGTG
GAGGACCTCATCCCGTCTTCGAGCCCAATCAGCGCAGTAGAAAGTTCGCT
GTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:183481..186634+

>Ggra5436.t1 ID=Ggra5436.t1|Name=Ggra5436.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000842_pilon:183481..186634+ (Gracilaria gracilis GNS1m male)
ATGTGGTTCACATTGCGGCGTGCTGCGACACGTGCGTGTACATCCATGTT
GCTCCATGGTGGAGACTCTGGAAGAAACAGACAGCAGCCAGTAGAGGCCC
GTGACGCGAGTGTGATTGGCGTTGATCTGCATGGGCGCCTCTCCGCGTGG
GTCTGGGTAACATCGATCACGAGGAAATGGGCGACTGTCTGGACAATTGG
CTTTGAAGACGATGACGCGGTGTGTGCTCAGAAGATCGAGGCTCTGGTGC
ATGGCGTACTCACAGTTGAAGCGGTTGCAATCGAGGGCATGTGGGAACCA
AAAGACCTCGCGGACGAAGTGGTGTTCTTCACTCTTGGCAATCTGCAGCA
GAAGAACTCACCCCCAGCCGTCGCAGCTCGTTGCACCGCTGCCGTCAACA
TCGCTCATCCCGTCGTCGTCGTGCGCGCAGCAGCGTACGCCACCTGCGTA
GCTTATGGCGCGGGGCTCGCCGTCCCTCCCGCCGCTCCGCTCGCTGCCGC
CGTCACTGCCGTTCTCCAAGCCGCCGCCTCACATCAGATCTTCGTCGCAG
CTGCTGGCGTCGTCTTCGCACTGCGTCGCCTCGTATTTATCTCCGTCGTC
ATGCACTTCGCTGTTATGCTTGCGTGCCTCGCAGTCGTGCTGGCACAGCA
CGCCATCGCCGCGCCGCGCGCGCCGCGAAATTGCCCGCTCATGATGCCGC
CGCCATCCGTGCGCTCGCTTGCGCAGCCGCGATCCGTGGGAGCCTTGTTT
TCGGACGCCTACATCAAGTCGCACCTCGTGTGCTTCTACGGCGAGGGCTG
CGCCGGCTCGCTGCTGTCCACGAGCTGGGCTGCCACCGCCGTGTACTGTC
TTTTCAAGCCCACATCCAATTCCACGCATGATGTGGTGCTCATGGACGCG
TACTCCTCGCAGCCGTACGGCAGCGCGCTGCCGGGCGCCACTGACGAGTC
GCCCCTGGAACAGGAAAGCCACGAATCGTGCTTGGCCGTGGTGGTCACCG
GCGTGGATAACCCGCTGTACACCATGTCGCAGGGCGCGGCCGATTGGGGC
GCCGATGGTGTGGAGGACCTCATCCCGTCTTCGAGCCCAATCAGCGCAGT
AGAAAGTTCGCTGTAG
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