Ggra5414.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5414.t1
Unique NameGgra5414.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:373953..374993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002668790.1
PFAMsDNA_alkylation
Max annot lvl2759|Eukaryota
Evalue1.45e-09
EggNOG OGsCOG4912@1|root,2S5QV@2759|Eukaryota
DescriptionDNA alkylation repair enzyme
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5414Ggra5414Gracilaria gracilis GNS1m malegenetig00000099_pilon 373953..374993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5414.t1.stop1Ggra5414.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 373953..373955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5414.t1.CDS1Ggra5414.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 373953..374993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5414.t1.exon1Ggra5414.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 373953..374993 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5414.t1.start1Ggra5414.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 374991..374993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5414.t1Ggra5414.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 373953..374993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5414.t1 ID=Ggra5414.t1|Name=Ggra5414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MARGVRIMGVRYCVHNWYTDWKTHVPQISNQLQVVVAMELFRSQYLEDKF
SAIVLVGELLISDHVITPIHMPQFANLIDTSCISGYEVCDRFSQLVLKQL
LIVHRHETMPIIAEWANSDNSWRARSAIWALIPLAKDAIYENLILDGCAI
VLSKTEDCCKLAVGSALRALARTSPGPVYEFLNEDHNLLRMSAHGLSRAC
GDHNEWKQFFRNKRKDIVRNRRPVLPGADAVENSGAGALAASAASAPMDT
DQMAVSLPATTEVRPPQATRGVGASESGLPSISELIGMRSTARGSTAGAV
PVASLIHASGAQDEREAGETDEANNAATLANEEAGNGVANGEREDS*
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spliced messenger RNA

>Ggra5414.t1 ID=Ggra5414.t1|Name=Ggra5414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000099_pilon:373953..374993- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGAGGCGTAAGAATCATGGGCGTTCGATACTGTGTTCACAACTG
GTACACTGACTGGAAGACTCACGTCCCTCAAATAAGCAATCAGCTTCAGG
TGGTCGTTGCCATGGAGCTGTTTCGTTCGCAATACCTTGAGGATAAGTTC
TCCGCTATTGTTCTGGTGGGCGAGCTTCTCATCTCCGATCATGTCATCAC
GCCCATTCATATGCCGCAGTTTGCCAACCTCATCGACACTTCATGCATTT
CGGGCTACGAGGTTTGCGATCGATTCAGCCAGCTTGTGCTCAAGCAGTTG
CTCATAGTTCACCGACATGAGACCATGCCCATCATCGCGGAGTGGGCGAA
TAGCGACAACAGCTGGAGGGCGCGCAGTGCCATCTGGGCTCTCATCCCGC
TTGCTAAAGATGCAATCTACGAGAATCTTATTCTTGACGGCTGCGCCATT
GTTCTGAGCAAGACGGAAGATTGCTGTAAGCTGGCAGTGGGAAGCGCTCT
CAGAGCTCTAGCTCGCACATCTCCAGGCCCGGTATACGAATTTCTGAACG
AGGATCACAACCTACTCCGAATGTCTGCGCACGGACTGTCAAGGGCGTGC
GGCGATCACAATGAATGGAAGCAATTCTTCCGCAACAAACGAAAGGATAT
CGTGCGCAACAGAAGACCTGTGCTGCCAGGGGCTGACGCAGTTGAAAACT
CCGGCGCAGGTGCTTTGGCCGCTTCGGCGGCTTCGGCGCCGATGGATACT
GATCAAATGGCCGTGTCGCTTCCTGCTACGACTGAAGTGAGGCCTCCACA
GGCGACGAGGGGCGTAGGTGCGAGTGAAAGCGGGCTGCCTTCAATCTCGG
AGCTGATTGGGATGAGATCTACTGCGCGTGGCTCCACTGCTGGTGCTGTT
CCCGTGGCTTCTTTGATACATGCTTCAGGGGCACAAGATGAGAGGGAAGC
TGGTGAAACGGACGAAGCGAACAACGCGGCTACGCTGGCTAACGAGGAAG
CAGGGAACGGTGTGGCTAATGGTGAACGCGAGGATTCATAG
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protein sequence of Ggra5414.t1

>Ggra5414.t1 ID=Ggra5414.t1|Name=Ggra5414.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MARGVRIMGVRYCVHNWYTDWKTHVPQISNQLQVVVAMELFRSQYLEDKF
SAIVLVGELLISDHVITPIHMPQFANLIDTSCISGYEVCDRFSQLVLKQL
LIVHRHETMPIIAEWANSDNSWRARSAIWALIPLAKDAIYENLILDGCAI
VLSKTEDCCKLAVGSALRALARTSPGPVYEFLNEDHNLLRMSAHGLSRAC
GDHNEWKQFFRNKRKDIVRNRRPVLPGADAVENSGAGALAASAASAPMDT
DQMAVSLPATTEVRPPQATRGVGASESGLPSISELIGMRSTARGSTAGAV
PVASLIHASGAQDEREAGETDEANNAATLANEEAGNGVANGEREDS*
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mRNA from alignment at tig00000099_pilon:373953..374993-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5414.t1 ID=Ggra5414.t1|Name=Ggra5414.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000099_pilon:373953..374993- (Gracilaria gracilis GNS1m male)
ATGGCCCGAGGCGTAAGAATCATGGGCGTTCGATACTGTGTTCACAACTG
GTACACTGACTGGAAGACTCACGTCCCTCAAATAAGCAATCAGCTTCAGG
TGGTCGTTGCCATGGAGCTGTTTCGTTCGCAATACCTTGAGGATAAGTTC
TCCGCTATTGTTCTGGTGGGCGAGCTTCTCATCTCCGATCATGTCATCAC
GCCCATTCATATGCCGCAGTTTGCCAACCTCATCGACACTTCATGCATTT
CGGGCTACGAGGTTTGCGATCGATTCAGCCAGCTTGTGCTCAAGCAGTTG
CTCATAGTTCACCGACATGAGACCATGCCCATCATCGCGGAGTGGGCGAA
TAGCGACAACAGCTGGAGGGCGCGCAGTGCCATCTGGGCTCTCATCCCGC
TTGCTAAAGATGCAATCTACGAGAATCTTATTCTTGACGGCTGCGCCATT
GTTCTGAGCAAGACGGAAGATTGCTGTAAGCTGGCAGTGGGAAGCGCTCT
CAGAGCTCTAGCTCGCACATCTCCAGGCCCGGTATACGAATTTCTGAACG
AGGATCACAACCTACTCCGAATGTCTGCGCACGGACTGTCAAGGGCGTGC
GGCGATCACAATGAATGGAAGCAATTCTTCCGCAACAAACGAAAGGATAT
CGTGCGCAACAGAAGACCTGTGCTGCCAGGGGCTGACGCAGTTGAAAACT
CCGGCGCAGGTGCTTTGGCCGCTTCGGCGGCTTCGGCGCCGATGGATACT
GATCAAATGGCCGTGTCGCTTCCTGCTACGACTGAAGTGAGGCCTCCACA
GGCGACGAGGGGCGTAGGTGCGAGTGAAAGCGGGCTGCCTTCAATCTCGG
AGCTGATTGGGATGAGATCTACTGCGCGTGGCTCCACTGCTGGTGCTGTT
CCCGTGGCTTCTTTGATACATGCTTCAGGGGCACAAGATGAGAGGGAAGC
TGGTGAAACGGACGAAGCGAACAACGCGGCTACGCTGGCTAACGAGGAAG
CAGGGAACGGTGTGGCTAATGGTGAACGCGAGGATTCATAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:373953..374993-

>Ggra5414.t1 ID=Ggra5414.t1|Name=Ggra5414.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000099_pilon:373953..374993- (Gracilaria gracilis GNS1m male)
ATGGCCCGAGGCGTAAGAATCATGGGCGTTCGATACTGTGTTCACAACTG
GTACACTGACTGGAAGACTCACGTCCCTCAAATAAGCAATCAGCTTCAGG
TGGTCGTTGCCATGGAGCTGTTTCGTTCGCAATACCTTGAGGATAAGTTC
TCCGCTATTGTTCTGGTGGGCGAGCTTCTCATCTCCGATCATGTCATCAC
GCCCATTCATATGCCGCAGTTTGCCAACCTCATCGACACTTCATGCATTT
CGGGCTACGAGGTTTGCGATCGATTCAGCCAGCTTGTGCTCAAGCAGTTG
CTCATAGTTCACCGACATGAGACCATGCCCATCATCGCGGAGTGGGCGAA
TAGCGACAACAGCTGGAGGGCGCGCAGTGCCATCTGGGCTCTCATCCCGC
TTGCTAAAGATGCAATCTACGAGAATCTTATTCTTGACGGCTGCGCCATT
GTTCTGAGCAAGACGGAAGATTGCTGTAAGCTGGCAGTGGGAAGCGCTCT
CAGAGCTCTAGCTCGCACATCTCCAGGCCCGGTATACGAATTTCTGAACG
AGGATCACAACCTACTCCGAATGTCTGCGCACGGACTGTCAAGGGCGTGC
GGCGATCACAATGAATGGAAGCAATTCTTCCGCAACAAACGAAAGGATAT
CGTGCGCAACAGAAGACCTGTGCTGCCAGGGGCTGACGCAGTTGAAAACT
CCGGCGCAGGTGCTTTGGCCGCTTCGGCGGCTTCGGCGCCGATGGATACT
GATCAAATGGCCGTGTCGCTTCCTGCTACGACTGAAGTGAGGCCTCCACA
GGCGACGAGGGGCGTAGGTGCGAGTGAAAGCGGGCTGCCTTCAATCTCGG
AGCTGATTGGGATGAGATCTACTGCGCGTGGCTCCACTGCTGGTGCTGTT
CCCGTGGCTTCTTTGATACATGCTTCAGGGGCACAAGATGAGAGGGAAGC
TGGTGAAACGGACGAAGCGAACAACGCGGCTACGCTGGCTAACGAGGAAG
CAGGGAACGGTGTGGCTAATGGTGAACGCGAGGATTCATAG
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