Ggra5325.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5325.t1
Unique NameGgra5325.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:98202..98936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000023286
Preferred nameagdC
PFAMsGal_mutarotas_2,Glyco_hydro_31,NtCtMGAM_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K15925
KEGG ReactionR00028,R00801,R00802,R06087,R06088
KEGG Pathwayko00052,ko00500,ko01100,map00052,map00500,map01100
GOsGO:0000023,GO:0000025,GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0004558,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0005975,GO:0005976,GO:0005984,GO:0006073,GO:0008150,GO:0008152,GO:0008422,GO:0009044,GO:0009056,GO:0009057,GO:0009251,GO:0009311,GO:0009313,GO:0009505,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0010410,GO:0010411,GO:0015926,GO:0016020,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016798,GO:0030054,GO:0030312,GO:0032450,GO:0042221,GO:0042710,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044010,GO:0044011,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0044654,GO:0044764,GO:0045491,GO:0045493,GO:0046352,GO:0046527,GO:0046556,GO:0046686,GO:0048046,GO:0050896,GO:0051703,GO:0051704,GO:0055044,GO:0071554,GO:0071704,GO:0071944,GO:0080176,GO:0090599,GO:0090605,GO:0090609,GO:0097599,GO:1901575
Evalue2.24e-10
EggNOG OGsCOG1501@1|root,KOG1065@2759|Eukaryota,1MENV@121069|Pythiales
EC3.2.1.177,3.2.1.20
DescriptionAlpha-glucosidase. Source PGD
COG categoryG
CAZyGH31
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5325Ggra5325Gracilaria gracilis GNS1m malegenetig00000172_pilon 98202..98936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5325.t1.stop1Ggra5325.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 98202..98204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5325.t1.CDS1Ggra5325.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 98202..98936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5325.t1.exon1Ggra5325.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 98202..98936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5325.t1.start1Ggra5325.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 98934..98936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5325.t1Ggra5325.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 98202..98936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5325.t1 ID=Ggra5325.t1|Name=Ggra5325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MAPIAPQRWIEIFHSKPSMRYCYLLEKLPDDTFSKPSQQNRLRDASHIRD
GFRVFRLPFRRIEFVLTNGTDRNWEDNNGQNYVIDVPGRYVVEHGIRRVA
DADAQECYQTVCRPDDRFIQVCFRADLWDECYCSFQSDDNDWTKPPGQLM
TVVPSKQPGRYFQLVVEASRMACAFNDGGENWDSRLNSNYLIGCPGKYEV
CDGAAKYVSPSDKDLQTAPVKEAAPLSVAPSLGIPAAALPAVVQ*
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spliced messenger RNA

>Ggra5325.t1 ID=Ggra5325.t1|Name=Ggra5325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000172_pilon:98202..98936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCATTGCACCTCAGCGGTGGATAGAAATCTTCCACAGCAAGCC
GTCGATGCGCTATTGCTATTTGCTAGAAAAACTGCCGGACGACACCTTCT
CGAAGCCGTCGCAGCAGAATCGTCTCAGAGATGCCTCTCACATTCGCGAC
GGCTTTCGCGTCTTTCGACTGCCGTTTCGACGCATAGAGTTCGTGCTTAC
CAACGGCACCGATCGCAACTGGGAGGATAATAACGGCCAGAACTACGTCA
TTGATGTGCCCGGTCGTTACGTGGTCGAACATGGCATTCGTCGCGTCGCC
GACGCTGACGCGCAGGAATGTTATCAAACCGTGTGTCGGCCGGACGATCG
CTTCATCCAGGTTTGTTTCAGGGCCGATTTGTGGGACGAGTGTTATTGCT
CCTTTCAGAGTGATGACAATGACTGGACAAAACCTCCTGGACAGCTAATG
ACTGTCGTGCCCAGCAAGCAGCCGGGACGTTACTTCCAACTTGTTGTGGA
GGCTTCTCGTATGGCTTGTGCGTTCAATGACGGTGGCGAAAACTGGGACT
CTAGATTGAACAGCAATTATCTTATCGGATGTCCTGGCAAGTATGAGGTA
TGTGACGGCGCTGCAAAGTACGTTTCACCCTCGGATAAGGATCTGCAGAC
AGCGCCGGTGAAGGAAGCCGCACCACTATCCGTCGCTCCGAGTCTCGGCA
TACCAGCTGCAGCTCTTCCGGCGGTTGTACAGTAG
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protein sequence of Ggra5325.t1

>Ggra5325.t1 ID=Ggra5325.t1|Name=Ggra5325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MAPIAPQRWIEIFHSKPSMRYCYLLEKLPDDTFSKPSQQNRLRDASHIRD
GFRVFRLPFRRIEFVLTNGTDRNWEDNNGQNYVIDVPGRYVVEHGIRRVA
DADAQECYQTVCRPDDRFIQVCFRADLWDECYCSFQSDDNDWTKPPGQLM
TVVPSKQPGRYFQLVVEASRMACAFNDGGENWDSRLNSNYLIGCPGKYEV
CDGAAKYVSPSDKDLQTAPVKEAAPLSVAPSLGIPAAALPAVVQ*
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mRNA from alignment at tig00000172_pilon:98202..98936-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5325.t1 ID=Ggra5325.t1|Name=Ggra5325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000172_pilon:98202..98936- (Gracilaria gracilis GNS1m male)
ATGGCTCCCATTGCACCTCAGCGGTGGATAGAAATCTTCCACAGCAAGCC
GTCGATGCGCTATTGCTATTTGCTAGAAAAACTGCCGGACGACACCTTCT
CGAAGCCGTCGCAGCAGAATCGTCTCAGAGATGCCTCTCACATTCGCGAC
GGCTTTCGCGTCTTTCGACTGCCGTTTCGACGCATAGAGTTCGTGCTTAC
CAACGGCACCGATCGCAACTGGGAGGATAATAACGGCCAGAACTACGTCA
TTGATGTGCCCGGTCGTTACGTGGTCGAACATGGCATTCGTCGCGTCGCC
GACGCTGACGCGCAGGAATGTTATCAAACCGTGTGTCGGCCGGACGATCG
CTTCATCCAGGTTTGTTTCAGGGCCGATTTGTGGGACGAGTGTTATTGCT
CCTTTCAGAGTGATGACAATGACTGGACAAAACCTCCTGGACAGCTAATG
ACTGTCGTGCCCAGCAAGCAGCCGGGACGTTACTTCCAACTTGTTGTGGA
GGCTTCTCGTATGGCTTGTGCGTTCAATGACGGTGGCGAAAACTGGGACT
CTAGATTGAACAGCAATTATCTTATCGGATGTCCTGGCAAGTATGAGGTA
TGTGACGGCGCTGCAAAGTACGTTTCACCCTCGGATAAGGATCTGCAGAC
AGCGCCGGTGAAGGAAGCCGCACCACTATCCGTCGCTCCGAGTCTCGGCA
TACCAGCTGCAGCTCTTCCGGCGGTTGTACAGTAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:98202..98936-

>Ggra5325.t1 ID=Ggra5325.t1|Name=Ggra5325.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000172_pilon:98202..98936- (Gracilaria gracilis GNS1m male)
ATGGCTCCCATTGCACCTCAGCGGTGGATAGAAATCTTCCACAGCAAGCC
GTCGATGCGCTATTGCTATTTGCTAGAAAAACTGCCGGACGACACCTTCT
CGAAGCCGTCGCAGCAGAATCGTCTCAGAGATGCCTCTCACATTCGCGAC
GGCTTTCGCGTCTTTCGACTGCCGTTTCGACGCATAGAGTTCGTGCTTAC
CAACGGCACCGATCGCAACTGGGAGGATAATAACGGCCAGAACTACGTCA
TTGATGTGCCCGGTCGTTACGTGGTCGAACATGGCATTCGTCGCGTCGCC
GACGCTGACGCGCAGGAATGTTATCAAACCGTGTGTCGGCCGGACGATCG
CTTCATCCAGGTTTGTTTCAGGGCCGATTTGTGGGACGAGTGTTATTGCT
CCTTTCAGAGTGATGACAATGACTGGACAAAACCTCCTGGACAGCTAATG
ACTGTCGTGCCCAGCAAGCAGCCGGGACGTTACTTCCAACTTGTTGTGGA
GGCTTCTCGTATGGCTTGTGCGTTCAATGACGGTGGCGAAAACTGGGACT
CTAGATTGAACAGCAATTATCTTATCGGATGTCCTGGCAAGTATGAGGTA
TGTGACGGCGCTGCAAAGTACGTTTCACCCTCGGATAAGGATCTGCAGAC
AGCGCCGGTGAAGGAAGCCGCACCACTATCCGTCGCTCCGAGTCTCGGCA
TACCAGCTGCAGCTCTTCCGGCGGTTGTACAGTAG
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