Ggra5319.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5319.t1
Unique NameGgra5319.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:17060..17851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S25_339V6.1
Max annot lvl35493|Streptophyta
Evalue5.72e-18
EggNOG OGs2CMFY@1|root,2QQ8Q@2759|Eukaryota,37K19@33090|Viridiplantae,3G8NA@35493|Streptophyta
DescriptionPeroxisome biogenesis protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5319Ggra5319Gracilaria gracilis GNS1m malegenetig00000172_pilon 17060..17851 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5319.t1.start1Ggra5319.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 17060..17062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5319.t1.CDS1Ggra5319.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 17060..17851 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5319.t1.exon1Ggra5319.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 17060..17851 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5319.t1.stop1Ggra5319.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 17849..17851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5319.t1Ggra5319.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 17060..17851 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5319.t1 ID=Ggra5319.t1|Name=Ggra5319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MSPAVVAAAAAAAAALLYVLRGRRGGGGGGGTGGGAARDARAARRRAAVG
ADAHGRGAREDARAADKPRWLARVHVVTMGAVCSRAQRGALFCRREEAVL
EAAAMARGGADGGGACKEHMLDDAAQIPELPFVVRPALVRALRRFAELFD
LFVVVRVDDDDGEQLVTRALHAAGLFEPGLLHRSKLLFCETDTGRISVAR
QLEPQLHVDETVAVVTGLQRFVHFVALVTSDADACAAAAQQPLGSNVARF
SSLASFFAPSPSS*
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spliced messenger RNA

>Ggra5319.t1 ID=Ggra5319.t1|Name=Ggra5319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000172_pilon:17060..17851+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGGCCGTCGTGGCGGCTGCGGCGGCCGCCGCCGCCGCGCTGCT
GTACGTGTTGCGCGGGCGGCGCGGCGGTGGCGGTGGCGGCGGCACGGGTG
GCGGCGCGGCGCGCGACGCGCGCGCGGCGCGCCGAAGAGCGGCGGTTGGC
GCGGACGCGCACGGCCGCGGCGCGCGCGAAGACGCGCGCGCCGCCGACAA
GCCGCGCTGGCTGGCGCGCGTGCACGTGGTCACCATGGGCGCCGTGTGCA
GCCGCGCGCAGCGCGGCGCGTTGTTCTGCCGCCGCGAGGAGGCGGTGCTG
GAGGCGGCGGCGATGGCGCGCGGTGGCGCGGACGGCGGCGGCGCGTGCAA
GGAGCACATGCTCGACGACGCCGCGCAGATCCCGGAGCTGCCGTTCGTGG
TGCGGCCCGCGTTGGTGCGTGCTTTGCGCCGCTTTGCGGAGCTGTTCGAC
CTGTTTGTCGTCGTGCGCGTGGACGATGATGACGGCGAACAGCTGGTGAC
GCGCGCGCTGCACGCCGCGGGCCTGTTCGAGCCGGGCCTGCTGCATCGCA
GCAAGTTGCTGTTTTGCGAGACCGATACGGGGCGCATCTCGGTGGCGCGC
CAGTTGGAGCCGCAGTTGCATGTCGATGAGACCGTCGCTGTGGTCACTGG
CTTGCAGCGCTTCGTGCACTTTGTGGCGCTGGTTACGTCCGATGCGGACG
CTTGTGCCGCCGCCGCGCAGCAGCCGCTTGGCAGTAATGTGGCTAGATTC
TCGTCGTTGGCCTCCTTCTTTGCGCCTTCGCCTTCATCATAA
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protein sequence of Ggra5319.t1

>Ggra5319.t1 ID=Ggra5319.t1|Name=Ggra5319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MSPAVVAAAAAAAAALLYVLRGRRGGGGGGGTGGGAARDARAARRRAAVG
ADAHGRGAREDARAADKPRWLARVHVVTMGAVCSRAQRGALFCRREEAVL
EAAAMARGGADGGGACKEHMLDDAAQIPELPFVVRPALVRALRRFAELFD
LFVVVRVDDDDGEQLVTRALHAAGLFEPGLLHRSKLLFCETDTGRISVAR
QLEPQLHVDETVAVVTGLQRFVHFVALVTSDADACAAAAQQPLGSNVARF
SSLASFFAPSPSS*
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mRNA from alignment at tig00000172_pilon:17060..17851+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5319.t1 ID=Ggra5319.t1|Name=Ggra5319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000172_pilon:17060..17851+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGGCCGTCGTGGCGGCTGCGGCGGCCGCCGCCGCCGCGCTGCT
GTACGTGTTGCGCGGGCGGCGCGGCGGTGGCGGTGGCGGCGGCACGGGTG
GCGGCGCGGCGCGCGACGCGCGCGCGGCGCGCCGAAGAGCGGCGGTTGGC
GCGGACGCGCACGGCCGCGGCGCGCGCGAAGACGCGCGCGCCGCCGACAA
GCCGCGCTGGCTGGCGCGCGTGCACGTGGTCACCATGGGCGCCGTGTGCA
GCCGCGCGCAGCGCGGCGCGTTGTTCTGCCGCCGCGAGGAGGCGGTGCTG
GAGGCGGCGGCGATGGCGCGCGGTGGCGCGGACGGCGGCGGCGCGTGCAA
GGAGCACATGCTCGACGACGCCGCGCAGATCCCGGAGCTGCCGTTCGTGG
TGCGGCCCGCGTTGGTGCGTGCTTTGCGCCGCTTTGCGGAGCTGTTCGAC
CTGTTTGTCGTCGTGCGCGTGGACGATGATGACGGCGAACAGCTGGTGAC
GCGCGCGCTGCACGCCGCGGGCCTGTTCGAGCCGGGCCTGCTGCATCGCA
GCAAGTTGCTGTTTTGCGAGACCGATACGGGGCGCATCTCGGTGGCGCGC
CAGTTGGAGCCGCAGTTGCATGTCGATGAGACCGTCGCTGTGGTCACTGG
CTTGCAGCGCTTCGTGCACTTTGTGGCGCTGGTTACGTCCGATGCGGACG
CTTGTGCCGCCGCCGCGCAGCAGCCGCTTGGCAGTAATGTGGCTAGATTC
TCGTCGTTGGCCTCCTTCTTTGCGCCTTCGCCTTCATCATAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:17060..17851+

>Ggra5319.t1 ID=Ggra5319.t1|Name=Ggra5319.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000172_pilon:17060..17851+ (Gracilaria gracilis GNS1m male)
ATGTCGCCGGCCGTCGTGGCGGCTGCGGCGGCCGCCGCCGCCGCGCTGCT
GTACGTGTTGCGCGGGCGGCGCGGCGGTGGCGGTGGCGGCGGCACGGGTG
GCGGCGCGGCGCGCGACGCGCGCGCGGCGCGCCGAAGAGCGGCGGTTGGC
GCGGACGCGCACGGCCGCGGCGCGCGCGAAGACGCGCGCGCCGCCGACAA
GCCGCGCTGGCTGGCGCGCGTGCACGTGGTCACCATGGGCGCCGTGTGCA
GCCGCGCGCAGCGCGGCGCGTTGTTCTGCCGCCGCGAGGAGGCGGTGCTG
GAGGCGGCGGCGATGGCGCGCGGTGGCGCGGACGGCGGCGGCGCGTGCAA
GGAGCACATGCTCGACGACGCCGCGCAGATCCCGGAGCTGCCGTTCGTGG
TGCGGCCCGCGTTGGTGCGTGCTTTGCGCCGCTTTGCGGAGCTGTTCGAC
CTGTTTGTCGTCGTGCGCGTGGACGATGATGACGGCGAACAGCTGGTGAC
GCGCGCGCTGCACGCCGCGGGCCTGTTCGAGCCGGGCCTGCTGCATCGCA
GCAAGTTGCTGTTTTGCGAGACCGATACGGGGCGCATCTCGGTGGCGCGC
CAGTTGGAGCCGCAGTTGCATGTCGATGAGACCGTCGCTGTGGTCACTGG
CTTGCAGCGCTTCGTGCACTTTGTGGCGCTGGTTACGTCCGATGCGGACG
CTTGTGCCGCCGCCGCGCAGCAGCCGCTTGGCAGTAATGTGGCTAGATTC
TCGTCGTTGGCCTCCTTCTTTGCGCCTTCGCCTTCATCATAA
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