Ggra5284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5284.t1
Unique NameGgra5284.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:145535..146768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707783.1
Preferred nameABCF3
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl2759|Eukaryota
KEGG koko:K06158
GOsGO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008144,GO:0008150,GO:0009889,GO:0009893,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022626,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033135,GO:0033138,GO:0034248,GO:0035639,GO:0036094,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1900247,GO:1901265,GO:1901363,GO:1990904,GO:2000112,GO:2000765
Evalue4.66e-31
EggNOG OGsCOG0488@1|root,KOG0062@2759|Eukaryota
DescriptionATPase activity
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5284Ggra5284Gracilaria gracilis GNS1m malegenetig00000082_pilon 145535..146768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1Ggra5284.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 145535..146768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1.start1Ggra5284.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 145535..145537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1.CDS1Ggra5284.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 145535..145691 +
Ggra5284.t1.CDS2Ggra5284.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000082_pilon 145940..146211 +
Ggra5284.t1.CDS3Ggra5284.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000082_pilon 146334..146768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1.exon1Ggra5284.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 145535..145691 +
Ggra5284.t1.exon2Ggra5284.t1.exon2Gracilaria gracilis GNS1m maleexontig00000082_pilon 145940..146211 +
Ggra5284.t1.exon3Ggra5284.t1.exon3Gracilaria gracilis GNS1m maleexontig00000082_pilon 146334..146768 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1.intron1Ggra5284.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000082_pilon 145692..145939 +
Ggra5284.t1.intron2Ggra5284.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000082_pilon 146212..146333 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5284.t1.stop1Ggra5284.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 146766..146768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5284.t1 ID=Ggra5284.t1|Name=Ggra5284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MFTYPCISAIYQGQALRLSRDGATSSLDRCIIKIKIRCQTGVVTPTTTVL
ELLARDILRQLHGAPTEDQTRETLVRLTKATRLGANVGIDTGRRKGTRTR
QRVGNANQKLDRSAEAERAKEASAARRARRVGAQVKTYQSEATRVGIIGR
NGCGNTTLMRAIVCRELPIPEDMDIVYVELEIAGSEKTPLEVVLESEFER
QELLAEKEELNDEKLKKAGNELDPSVAARITELYEKHGQMDADKAKVRAA
GILDGLGFSDHVMSNQTVNEFSGGWRMRISLASALFL*
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spliced messenger RNA

>Ggra5284.t1 ID=Ggra5284.t1|Name=Ggra5284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000082_pilon:145535..146768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACATACCCCTGCATATCGGCGATATATCAAGGTCAGGCCCTGCG
CCTCTCTCGGGACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCTCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGA
GGATCAAACAAGAGAAACGCTCGTTCGTCTCACGAAAGCAACTCGGTTAG
GAGCAAATGTGGGCATAGACACAGGGAGACGTAAAGGAACCAGGACAAGG
CAACGCGTAGGAAACGCCAACCAGAAATTGGACCGCTCTGCGGAAGCTGA
AAGAGCCAAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGC
AGGTAAAGACGTACCAATCCGAAGCCACGAGAGTTGGAATCATCGGAAGA
AATGGATGTGGTAATACAACATTGATGCGAGCGATTGTCTGTCGAGAACT
ACCAATACCAGAAGATATGGATATTGTGTATGTCGAACTGGAAATAGCTG
GCAGTGAGAAGACGCCCTTGGAGGTGGTGCTGGAAAGCGAATTCGAGCGA
CAAGAGCTTCTGGCTGAAAAGGAAGAACTCAACGACGAGAAACTAAAGAA
AGCAGGGAACGAGCTGGACCCATCTGTTGCAGCCAGAATCACTGAGTTAT
ACGAGAAGCATGGTCAGATGGATGCCGACAAGGCGAAGGTGCGCGCTGCG
GGTATTCTTGATGGACTTGGTTTCAGTGATCATGTGATGTCGAATCAAAC
AGTGAACGAGTTTTCCGGTGGTTGGCGTATGCGTATTTCGCTGGCCTCTG
CACTCTTCCTGTAA
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protein sequence of Ggra5284.t1

>Ggra5284.t1 ID=Ggra5284.t1|Name=Ggra5284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MFTYPCISAIYQGQALRLSRDGATSSLDRCIIKIKIRCQTGVVTPTTTVL
ELLARDILRQLHGAPTEDQTRETLVRLTKATRLGANVGIDTGRRKGTRTR
QRVGNANQKLDRSAEAERAKEASAARRARRVGAQVKTYQSEATRVGIIGR
NGCGNTTLMRAIVCRELPIPEDMDIVYVELEIAGSEKTPLEVVLESEFER
QELLAEKEELNDEKLKKAGNELDPSVAARITELYEKHGQMDADKAKVRAA
GILDGLGFSDHVMSNQTVNEFSGGWRMRISLASALFL*
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mRNA from alignment at tig00000082_pilon:145535..146768+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5284.t1 ID=Ggra5284.t1|Name=Ggra5284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1234bp|location=Sequence derived from alignment at tig00000082_pilon:145535..146768+ (Gracilaria gracilis GNS1m male)
ATGTTTACATACCCCTGCATATCGGCGATATATCAAGGTCAGGCCCTGCG
CCTCTCTCGGGACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCGTACGTAGTGGTATATATATATTTCTCGTACCACGTCCTTGTT
TTGATCCTTCATTGGTCTGAAGATCCAAGCTTgagaacgagagagagaga
gagaCGTTTTTTAGCCAATCTTGATCCAGCCGTAATACAATATCTGACTT
CGGCACTCGCAGATACGGCTGCTGCGGAAGACGAAGTAGTGAAAGTGGTC
TCAGTTTCTCTTCCGCACCTGAACCCTGACATTTCTTCATCTAAAAGCCA
GTAAGTCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGAGG
ATCAAACAAGAGAAACGCTCGTTCGTCTCACGAAAGCAACTCGGTTAGGA
GCAAATGTGGGCATAGACACAGGGAGACGTAAAGGAACCAGGACAAGGCA
ACGCGTAGGAAACGCCAACCAGAAATTGGACCGCTCTGCGGAAGCTGAAA
GAGCCAAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGCAG
GTAAAGACGTACCAATCCGAAGCCACGGTAAGCAGCACAAAAGCGAAGTA
CACCCCCAGTTCGAGCGATGTTCATATAGAAGGATTGGATTTGTCTTTTG
GAAGGATGAATTTATTAGATGGAGCCGAGCTTCATATACCATACGGCAGA
GAGTTGGAATCATCGGAAGAAATGGATGTGGTAATACAACATTGATGCGA
GCGATTGTCTGTCGAGAACTACCAATACCAGAAGATATGGATATTGTGTA
TGTCGAACTGGAAATAGCTGGCAGTGAGAAGACGCCCTTGGAGGTGGTGC
TGGAAAGCGAATTCGAGCGACAAGAGCTTCTGGCTGAAAAGGAAGAACTC
AACGACGAGAAACTAAAGAAAGCAGGGAACGAGCTGGACCCATCTGTTGC
AGCCAGAATCACTGAGTTATACGAGAAGCATGGTCAGATGGATGCCGACA
AGGCGAAGGTGCGCGCTGCGGGTATTCTTGATGGACTTGGTTTCAGTGAT
CATGTGATGTCGAATCAAACAGTGAACGAGTTTTCCGGTGGTTGGCGTAT
GCGTATTTCGCTGGCCTCTGCACTCTTCCTGTAA
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Coding sequence (CDS) from alignment at tig00000082_pilon:145535..146768+

>Ggra5284.t1 ID=Ggra5284.t1|Name=Ggra5284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000082_pilon:145535..146768+ (Gracilaria gracilis GNS1m male)
ATGTTTACATACCCCTGCATATCGGCGATATATCAAGGTCAGGCCCTGCG
CCTCTCTCGGGACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCTCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGA
GGATCAAACAAGAGAAACGCTCGTTCGTCTCACGAAAGCAACTCGGTTAG
GAGCAAATGTGGGCATAGACACAGGGAGACGTAAAGGAACCAGGACAAGG
CAACGCGTAGGAAACGCCAACCAGAAATTGGACCGCTCTGCGGAAGCTGA
AAGAGCCAAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGC
AGGTAAAGACGTACCAATCCGAAGCCACGAGAGTTGGAATCATCGGAAGA
AATGGATGTGGTAATACAACATTGATGCGAGCGATTGTCTGTCGAGAACT
ACCAATACCAGAAGATATGGATATTGTGTATGTCGAACTGGAAATAGCTG
GCAGTGAGAAGACGCCCTTGGAGGTGGTGCTGGAAAGCGAATTCGAGCGA
CAAGAGCTTCTGGCTGAAAAGGAAGAACTCAACGACGAGAAACTAAAGAA
AGCAGGGAACGAGCTGGACCCATCTGTTGCAGCCAGAATCACTGAGTTAT
ACGAGAAGCATGGTCAGATGGATGCCGACAAGGCGAAGGTGCGCGCTGCG
GGTATTCTTGATGGACTTGGTTTCAGTGATCATGTGATGTCGAATCAAAC
AGTGAACGAGTTTTCCGGTGGTTGGCGTATGCGTATTTCGCTGGCCTCTG
CACTCTTCCTGTAA
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