Ggra5224.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5224.t1
Unique NameGgra5224.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:804671..805426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5224Ggra5224Gracilaria gracilis GNS1m malegenetig00000069_pilon 804671..805426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1Ggra5224.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 804671..805426 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1.start1Ggra5224.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 804671..804673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1.CDS1Ggra5224.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 804671..804851 +
Ggra5224.t1.CDS2Ggra5224.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 804963..805426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1.exon1Ggra5224.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 804671..804851 +
Ggra5224.t1.exon2Ggra5224.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 804963..805426 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1.intron1Ggra5224.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 804852..804962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5224.t1.stop1Ggra5224.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 805424..805426 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5224.t1 ID=Ggra5224.t1|Name=Ggra5224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MCEDWFHEKCYILDALARKRSSPFDMEYELTCKDCVKRLPVLAEYYEALS
VWKKNRYIKKQCVELYQSGRVSYIVDRNDFVSPASEDEESESFSEQEDDD
DDEIVELEEVSASESSVPEESSAPKTFDEGERIPRKPRVQKKSAPPQKPV
EQPKRARQGNEPLGVHEIMNIRRKITDFLREAIQTNGGNLNRDSLLSYMS
ELKVELLSNVAEKE*
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spliced messenger RNA

>Ggra5224.t1 ID=Ggra5224.t1|Name=Ggra5224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000069_pilon:804671..805426+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGAGGATTGGTTTCATGAGAAATGTTATATCCTCGACGCCCTTGC
TCGAAAGCGCTCGAGTCCCTTTGACATGGAATACGAGCTCACCTGTAAGG
ATTGTGTGAAAAGGCTTCCCGTTCTTGCAGAGTACTACGAGGCGCTATCT
GTATGGAAGAAGAACAGATACATTAAGAAACaatgtgtgGAACTTTATCA
ATCTGGTAGGGTGTCATACATTGTGGACAGAAATGACTTCGTTTCACCCG
CCTCCGAGGATGAAGAAAGTGAGAGTTTTAGTGAGCAGGAAGATGATGAC
GATGACGAAATTGTCGAGCTTGAAGAAGTGAGTGCGTCGGAGTCATCAGT
TCCCGAGGAGTCATCGGCTCCAAAAACATTCGATGAAGGCGAGCGTATTC
CACGAAAGCCTCGTGTTCAGAAGAAATCTGCCCCTCCACAGAAACCCGTG
GAACAACCAAAGCGGGCAAGACAGGGAAATGAACCCCTTGGGGTGCACGA
AATCATGAACATCCGTAGAAAGATCACAGATTTTCTTCGAGAAGCTATTC
AGacaaatggtggtaatctaaatcgagattctctattgtcgtacatgtcg
gagttgaaggtggaattactctcCAATGTTGCGGAGAAAGAATGA
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protein sequence of Ggra5224.t1

>Ggra5224.t1 ID=Ggra5224.t1|Name=Ggra5224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MCEDWFHEKCYILDALARKRSSPFDMEYELTCKDCVKRLPVLAEYYEALS
VWKKNRYIKKQCVELYQSGRVSYIVDRNDFVSPASEDEESESFSEQEDDD
DDEIVELEEVSASESSVPEESSAPKTFDEGERIPRKPRVQKKSAPPQKPV
EQPKRARQGNEPLGVHEIMNIRRKITDFLREAIQTNGGNLNRDSLLSYMS
ELKVELLSNVAEKE*
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mRNA from alignment at tig00000069_pilon:804671..805426+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5224.t1 ID=Ggra5224.t1|Name=Ggra5224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000069_pilon:804671..805426+ (Gracilaria gracilis GNS1m male)
ATGTGTGAGGATTGGTTTCATGAGAAATGTTATATCCTCGACGCCCTTGC
TCGAAAGCGCTCGAGTCCCTTTGACATGGAATACGAGCTCACCTGTAAGG
ATTGTGTGAAAAGGCTTCCCGTTCTTGCAGAGTACTACGAGGCGCTATCT
GTATGGAAGAAGAACAGATACATTAAGAAACGTAAGGGGGATCAGTGTAT
TCGCCCTAGTAATGCGAGCGTTTCAACGAaggcaggaagcctagactaca
tgtggcgtcctggcttccgctcctatttatgtcgatgtaaagaatgtgtg
GAACTTTATCAATCTGGTAGGGTGTCATACATTGTGGACAGAAATGACTT
CGTTTCACCCGCCTCCGAGGATGAAGAAAGTGAGAGTTTTAGTGAGCAGG
AAGATGATGACGATGACGAAATTGTCGAGCTTGAAGAAGTGAGTGCGTCG
GAGTCATCAGTTCCCGAGGAGTCATCGGCTCCAAAAACATTCGATGAAGG
CGAGCGTATTCCACGAAAGCCTCGTGTTCAGAAGAAATCTGCCCCTCCAC
AGAAACCCGTGGAACAACCAAAGCGGGCAAGACAGGGAAATGAACCCCTT
GGGGTGCACGAAATCATGAACATCCGTAGAAAGATCACAGATTTTCTTCG
AGAAGCTATTCAGacaaatggtggtaatctaaatcgagattctctattgt
cgtacatgtcggagttgaaggtggaattactctcCAATGTTGCGGAGAAA
GAATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:804671..805426+

>Ggra5224.t1 ID=Ggra5224.t1|Name=Ggra5224.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000069_pilon:804671..805426+ (Gracilaria gracilis GNS1m male)
ATGTGTGAGGATTGGTTTCATGAGAAATGTTATATCCTCGACGCCCTTGC
TCGAAAGCGCTCGAGTCCCTTTGACATGGAATACGAGCTCACCTGTAAGG
ATTGTGTGAAAAGGCTTCCCGTTCTTGCAGAGTACTACGAGGCGCTATCT
GTATGGAAGAAGAACAGATACATTAAGAAACaatgtgtgGAACTTTATCA
ATCTGGTAGGGTGTCATACATTGTGGACAGAAATGACTTCGTTTCACCCG
CCTCCGAGGATGAAGAAAGTGAGAGTTTTAGTGAGCAGGAAGATGATGAC
GATGACGAAATTGTCGAGCTTGAAGAAGTGAGTGCGTCGGAGTCATCAGT
TCCCGAGGAGTCATCGGCTCCAAAAACATTCGATGAAGGCGAGCGTATTC
CACGAAAGCCTCGTGTTCAGAAGAAATCTGCCCCTCCACAGAAACCCGTG
GAACAACCAAAGCGGGCAAGACAGGGAAATGAACCCCTTGGGGTGCACGA
AATCATGAACATCCGTAGAAAGATCACAGATTTTCTTCGAGAAGCTATTC
AGacaaatggtggtaatctaaatcgagattctctattgtcgtacatgtcg
gagttgaaggtggaattactctcCAATGTTGCGGAGAAAGAATGA
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