Ggra5193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5193.t1
Unique NameGgra5193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:725799..727181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003061410.1
PFAMsMyb_DNA-binding
Max annot lvl33090|Viridiplantae
Evalue1.61e-15
EggNOG OGs2C4RN@1|root,2RIEW@2759|Eukaryota,37NY2@33090|Viridiplantae
Descriptiontranscription factor
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5193Ggra5193Gracilaria gracilis GNS1m malegenetig00000069_pilon 725799..727181 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5193.t1.start1Ggra5193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 725799..725801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5193.t1.CDS1Ggra5193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 725799..727181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5193.t1.exon1Ggra5193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 725799..727181 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5193.t1.stop1Ggra5193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 727179..727181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5193.t1Ggra5193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 725799..727181 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5193.t1 ID=Ggra5193.t1|Name=Ggra5193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MNQEQQHPSHYAAHQAQHQRPAEPSYPSTWTSHQPQRYESAHPTSTALAV
VTMNVYAVPCAYTVNNEPLYLQFGTHSAADAAQSASVLGQRYWHLKTQQT
PRDDYAYSPATVNRPNRTYDPAQAPANERYEPYESGSAPRPQPTYEYPPG
DALARAREFNSAAPRSIGHEMQQQQPPQPQRVYPEPEIARSVVPDIPRPS
PVVVSKDDFSEQHAGSVPHATQVNRSANYEAEDRCSDRSGRDPGADRSVP
KEQSSHHESNDIRDTSHHRMSFPDASHLNETSMKTTDYANSDRTPRSRGS
KRFSDGLSNETEGRSKRSRLHWTPELHKSFLAAVDQLGIDNAVPTSIIRE
MGVEGLSRENVASHLQKHRSSLKKEKEEAEKKELLETLKGFMQCDPSNPR
KNLSDADVLKEAAARQRVRKQDNTINLQGSMKADSPHVAMNRTSAKERRE
HTKASNRGHP*
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spliced messenger RNA

>Ggra5193.t1 ID=Ggra5193.t1|Name=Ggra5193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000069_pilon:725799..727181+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAAGAACAACAGCACCCCTCCCACTATGCGGCCCATCAAGCACA
GCATCAAAGACCAGCGGAGCCTTCGTATCCGTCGACATGGACCTCGCATC
AACCACAACGCTATGAATCAGCGCATCCGACCTCGACTGCGCTCGCAGTC
GTAACCATGAACGTATATGCAGTCCCATGTGCGTATACGGTGAACAATGA
ACCGCTTTATTTGCAATTCGGCACTCACTCTGCAGCCGACGCCGCACAAT
CTGCTTCAGTCCTCGGACAAAGGTATTGGCACCTGAAAACCCAGCAGACG
CCCAGGGACGATTATGCTTATTCGCCAGCAACGGTTAATCGCCCCAACAG
AACCTATGATCCAGCACAAGCTCCCGCAAACGAACGCTATGAACCATATG
AATCTGGGAGTGCTCCTCGTCCCCAGCCAACATATGAATACCCTCCTGGC
GATGCTCTGGCAAGAGCACGGGAATTCAACTCGGCTGCACCCCGTTCAAT
AGGACATGAGATGCAACAGCAACAGCCACCGCAACCCCAAAGAGTGTATC
CAGAGCCTGAAATTGCCCGAAGCGTAGTTCCAGACATTCCTCGTCCCTCA
CCTGTTGTGGTTTCCAAAGATGATTTTAGTGAGCAGCATGCCGGGTCTGT
TCCACATGCTACACAAGTGAACAGAAGTGCAAACTATGAAGCAGAAGACC
GTTGCAGTGATCGAAGCGGACGAGATCCAGGAGCGGACAGAAGTGTTCCA
AAAGAGCAAAGTTCTCACCATGAAAGCAATGATATTCGTGATACGTCCCA
TCATCGCATGAGTTTTCCTGATGCCTCTCACTTAAACGAGACTAGCATGA
AAACCACCGACTATGCCAACAGCGACAGAACGCCGAGATCAAGGGGTTCG
AAACGTTTTTCTGATGGGCTATCAAACGAAACGGAAGGTCGCTCAAAGAG
AAGTCGTCTGCATTGGACCCCAGAGCTTCATAAATCTTTTTTGGCAGCCG
TAGATCAGCTGGGTATTGACAATGCCGTGCCTACATCTATTATCCGAGAG
ATGGGCGTAGAAGGATTATCGAGGGAAAACGTGGCGTCCCATCTTCAAAA
ACATAGAAGTAGTTTAAAGAAGGAAAAGGAAGAAGCTGAAAAGAAGGAAT
TACTAGAGACGTTAAAGGGCTTTATGCAATGTGATCCGAGTAATCCGCGA
AAGAATTTGTCAGACGCAGATGTTTTGAAGGAGGCGGCAGCACGGCAAAG
AGTTCGGAAGCAAGATAATACAATTAACCTTCAAGGTTCTATGAAGGCAG
ATTCTCCTCATGTAGCTATGAATCGTACATCTGCAAAAGAGCGCAGAGAA
CATACGAAAGCTAGCAATAGGGGTCATCCTTGA
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protein sequence of Ggra5193.t1

>Ggra5193.t1 ID=Ggra5193.t1|Name=Ggra5193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MNQEQQHPSHYAAHQAQHQRPAEPSYPSTWTSHQPQRYESAHPTSTALAV
VTMNVYAVPCAYTVNNEPLYLQFGTHSAADAAQSASVLGQRYWHLKTQQT
PRDDYAYSPATVNRPNRTYDPAQAPANERYEPYESGSAPRPQPTYEYPPG
DALARAREFNSAAPRSIGHEMQQQQPPQPQRVYPEPEIARSVVPDIPRPS
PVVVSKDDFSEQHAGSVPHATQVNRSANYEAEDRCSDRSGRDPGADRSVP
KEQSSHHESNDIRDTSHHRMSFPDASHLNETSMKTTDYANSDRTPRSRGS
KRFSDGLSNETEGRSKRSRLHWTPELHKSFLAAVDQLGIDNAVPTSIIRE
MGVEGLSRENVASHLQKHRSSLKKEKEEAEKKELLETLKGFMQCDPSNPR
KNLSDADVLKEAAARQRVRKQDNTINLQGSMKADSPHVAMNRTSAKERRE
HTKASNRGHP*
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mRNA from alignment at tig00000069_pilon:725799..727181+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5193.t1 ID=Ggra5193.t1|Name=Ggra5193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000069_pilon:725799..727181+ (Gracilaria gracilis GNS1m male)
ATGAACCAAGAACAACAGCACCCCTCCCACTATGCGGCCCATCAAGCACA
GCATCAAAGACCAGCGGAGCCTTCGTATCCGTCGACATGGACCTCGCATC
AACCACAACGCTATGAATCAGCGCATCCGACCTCGACTGCGCTCGCAGTC
GTAACCATGAACGTATATGCAGTCCCATGTGCGTATACGGTGAACAATGA
ACCGCTTTATTTGCAATTCGGCACTCACTCTGCAGCCGACGCCGCACAAT
CTGCTTCAGTCCTCGGACAAAGGTATTGGCACCTGAAAACCCAGCAGACG
CCCAGGGACGATTATGCTTATTCGCCAGCAACGGTTAATCGCCCCAACAG
AACCTATGATCCAGCACAAGCTCCCGCAAACGAACGCTATGAACCATATG
AATCTGGGAGTGCTCCTCGTCCCCAGCCAACATATGAATACCCTCCTGGC
GATGCTCTGGCAAGAGCACGGGAATTCAACTCGGCTGCACCCCGTTCAAT
AGGACATGAGATGCAACAGCAACAGCCACCGCAACCCCAAAGAGTGTATC
CAGAGCCTGAAATTGCCCGAAGCGTAGTTCCAGACATTCCTCGTCCCTCA
CCTGTTGTGGTTTCCAAAGATGATTTTAGTGAGCAGCATGCCGGGTCTGT
TCCACATGCTACACAAGTGAACAGAAGTGCAAACTATGAAGCAGAAGACC
GTTGCAGTGATCGAAGCGGACGAGATCCAGGAGCGGACAGAAGTGTTCCA
AAAGAGCAAAGTTCTCACCATGAAAGCAATGATATTCGTGATACGTCCCA
TCATCGCATGAGTTTTCCTGATGCCTCTCACTTAAACGAGACTAGCATGA
AAACCACCGACTATGCCAACAGCGACAGAACGCCGAGATCAAGGGGTTCG
AAACGTTTTTCTGATGGGCTATCAAACGAAACGGAAGGTCGCTCAAAGAG
AAGTCGTCTGCATTGGACCCCAGAGCTTCATAAATCTTTTTTGGCAGCCG
TAGATCAGCTGGGTATTGACAATGCCGTGCCTACATCTATTATCCGAGAG
ATGGGCGTAGAAGGATTATCGAGGGAAAACGTGGCGTCCCATCTTCAAAA
ACATAGAAGTAGTTTAAAGAAGGAAAAGGAAGAAGCTGAAAAGAAGGAAT
TACTAGAGACGTTAAAGGGCTTTATGCAATGTGATCCGAGTAATCCGCGA
AAGAATTTGTCAGACGCAGATGTTTTGAAGGAGGCGGCAGCACGGCAAAG
AGTTCGGAAGCAAGATAATACAATTAACCTTCAAGGTTCTATGAAGGCAG
ATTCTCCTCATGTAGCTATGAATCGTACATCTGCAAAAGAGCGCAGAGAA
CATACGAAAGCTAGCAATAGGGGTCATCCTTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:725799..727181+

>Ggra5193.t1 ID=Ggra5193.t1|Name=Ggra5193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000069_pilon:725799..727181+ (Gracilaria gracilis GNS1m male)
ATGAACCAAGAACAACAGCACCCCTCCCACTATGCGGCCCATCAAGCACA
GCATCAAAGACCAGCGGAGCCTTCGTATCCGTCGACATGGACCTCGCATC
AACCACAACGCTATGAATCAGCGCATCCGACCTCGACTGCGCTCGCAGTC
GTAACCATGAACGTATATGCAGTCCCATGTGCGTATACGGTGAACAATGA
ACCGCTTTATTTGCAATTCGGCACTCACTCTGCAGCCGACGCCGCACAAT
CTGCTTCAGTCCTCGGACAAAGGTATTGGCACCTGAAAACCCAGCAGACG
CCCAGGGACGATTATGCTTATTCGCCAGCAACGGTTAATCGCCCCAACAG
AACCTATGATCCAGCACAAGCTCCCGCAAACGAACGCTATGAACCATATG
AATCTGGGAGTGCTCCTCGTCCCCAGCCAACATATGAATACCCTCCTGGC
GATGCTCTGGCAAGAGCACGGGAATTCAACTCGGCTGCACCCCGTTCAAT
AGGACATGAGATGCAACAGCAACAGCCACCGCAACCCCAAAGAGTGTATC
CAGAGCCTGAAATTGCCCGAAGCGTAGTTCCAGACATTCCTCGTCCCTCA
CCTGTTGTGGTTTCCAAAGATGATTTTAGTGAGCAGCATGCCGGGTCTGT
TCCACATGCTACACAAGTGAACAGAAGTGCAAACTATGAAGCAGAAGACC
GTTGCAGTGATCGAAGCGGACGAGATCCAGGAGCGGACAGAAGTGTTCCA
AAAGAGCAAAGTTCTCACCATGAAAGCAATGATATTCGTGATACGTCCCA
TCATCGCATGAGTTTTCCTGATGCCTCTCACTTAAACGAGACTAGCATGA
AAACCACCGACTATGCCAACAGCGACAGAACGCCGAGATCAAGGGGTTCG
AAACGTTTTTCTGATGGGCTATCAAACGAAACGGAAGGTCGCTCAAAGAG
AAGTCGTCTGCATTGGACCCCAGAGCTTCATAAATCTTTTTTGGCAGCCG
TAGATCAGCTGGGTATTGACAATGCCGTGCCTACATCTATTATCCGAGAG
ATGGGCGTAGAAGGATTATCGAGGGAAAACGTGGCGTCCCATCTTCAAAA
ACATAGAAGTAGTTTAAAGAAGGAAAAGGAAGAAGCTGAAAAGAAGGAAT
TACTAGAGACGTTAAAGGGCTTTATGCAATGTGATCCGAGTAATCCGCGA
AAGAATTTGTCAGACGCAGATGTTTTGAAGGAGGCGGCAGCACGGCAAAG
AGTTCGGAAGCAAGATAATACAATTAACCTTCAAGGTTCTATGAAGGCAG
ATTCTCCTCATGTAGCTATGAATCGTACATCTGCAAAAGAGCGCAGAGAA
CATACGAAAGCTAGCAATAGGGGTCATCCTTGA
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