|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005702778.1 |
| Preferred name | RAE1 |
| PFAMs | WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K14298 |
| KEGG TC | 1.I.1 |
| KEGG Pathway | ko03013,ko05164,map03013,map05164 |
| KEGG Module | M00427 |
| GOs | GO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728 |
| Evalue | 3.26e-81 |
| EggNOG OGs | KOG0647@1|root,KOG0647@2759|Eukaryota |
| Description | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra5093.t1.start1 | Ggra5093.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000069_pilon 442415..442417 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra5093.t1.intron1 | Ggra5093.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000069_pilon 443389..444548 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra5093.t1.stop1 | Ggra5093.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000069_pilon 445258..445260 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra5093.t1 ID=Ggra5093.t1|Name=Ggra5093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp MSPFVSNAPANPNNGYLLPDPPDDTVSRLRFSSTNAPFLAASSWNGTVRV WKVDPAVGNATAVSLTHDSAPILDLSWLSDNSTIIYAGASTRAHRWDLAT GTTEVVAAHDNSIRCTHDVSSINSFATAGWDSLLRYWDVRSPTGAPLLSV KLPERAYAMDARGPLMVLALADRKIAIYDVRKPSELYLERYTQLKYQTRC IAAWPDAMGYNVGGVEGKVSVENVQDSKSKQNYSFFCHKDKQGTMSSVNA IRFHYQSRAFCTAGSDGMLHFWDKDRKDRASMRRFQKMGQPICDMDFSSD GSMYAYAVGYDWLQGSSGRTNMESTKLLAFVAPLPSSRTPPRASASQKSD KRSGGATPRPAARPKRRPKRPPTAPDVKAYSIADTLRDSPHLNSTLLTAM RDYFGDDGREVQDYMKRPRTADGEPMFRCVIVGSGGRELQLAKTLCDSGV ISGLYYCPDHDVACDIEMNKYAQSTTVSAEKRPKDAVRFAKWCVADAVFI GPDRQQHISREEEVELAKAKITVFPHDVSAAIADGSMDVKECLFPLAQGE QEVPADEELVE* back to topspliced messenger RNA >Ggra5093.t1 ID=Ggra5093.t1|Name=Ggra5093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000069_pilon:442415..445260+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCCCTTTTGTATCAAACGCGCCAGCAAACCCAAACAACGGCTACTT GCTTCCGGATCCGCCAGATGACACCGTCTCCCGACTACGTTTCTCCTCCA CCAACGCCCCATTCCTGGCCGCCTCGTCGTGGAACGGCACCGTACGCGTG TGGAAGGTCGACCCCGCCGTGGGAAACGCCACCGCCGTCTCGCTCACGCA CGATTCCGCCCCCATTCTCGATCTCTCGTGGCTCAGCGACAACTCCACCA TAATCTACGCCGGCGCCAGCACCAGGGCGCATCGCTGGGACCTGGCCACC GGCACCACCGAAGTTGTTGCTGCGCACGACAATTCCATTCGATGCACGCA TGACGTCAGCAGCATCAACTCCTTTGCCACTGCGGGGTGGGATAGTTTGT TGAGATACTGGGATGTTCGTTCGCCTACCGGAGCGCCGCTTTTGAGCGTC AAGCTGCCGGAGCGCGCTTATGCTATGGACGCGCGCGGCCCTTTGATGGT TCTTGCGCTTGCGGACCGAAAGATTGCCATCTATGACGTTAGAAAACCGA GCGAGCTTTACCTTGAGCGTTATACACAGCTCAAGTATCAAACGCGCTGT ATAGCCGCATGGCCAGATGCCATGGGATACAATGTGGGTGGCGTGGAAGG CAAGGTGAGCGTTGAAAACGTTCAGGATTCAAAGAGCAAACAGAATTACT CCTTCTTCTGTCACAAGGATAAACAAGGAACAATGAGCTCTGTCAATGCC ATTCGCTTTCATTATCAGAGCCGCGCGTTTTGTACGGCGGGCAGTGACGG AATGCTTCACTTTTGGGACAAGGATCGAAAGGATCGTGCTTCTATGCGCC GATTTCAGAAGATGGGGCAGCCAATATGCGACATGGACTTTAGTAGTGAT GGCAGTATGTACGCGTATGCCGTAGGTTATGATTGGCTGCAAGGCTCCTC GGGAAGGACTAATATGGAAAGCACCAAGCTGCTCGCCTTCGTGGCGCCGC TGCCTTCCTCGCGCACGCCGCCCCGTGCGTCCGCCTCGCAGAAGAGCGAC AAGCGCAGCGGTGGTGCGACGCCGCGGCCAGCGGCGCGGCCGAAGCGACG GCCGAAGCGCCCGCCAACCGCGCCCGATGTGAAGGCGTACAGCATAGCAG ACACGCTTCGCGACTCGCCGCACCTCAACAGCACGCTGCTGACGGCGATG CGCGACTACTTTGGCGACGACGGCCGCGAGGTGCAGGACTACATGAAGCG GCCGCGCACGGCGGACGGCGAGCCCATGTTCCGCTGCGTCATCGTGGGCT CCGGCGGCAGGGAGCTGCAGCTGGCAAAGACGCTGTGCGACAGCGGCGTG ATTAGCGGGCTGTACTACTGCCCGGACCATGACGTTGCTTGCGACATTGA GATGAACAAGTATGCGCAGTCCACCACCGTGAGCGCGGAGAAGCGGCCCA AGGACGCTGTGCGGTTTGCAAAGTGGTGCGTGGCGGACGCGGTTTTCATC GGGCCGGACAGACAGCAGCACATCTCGAGGGAGGAGGAGGTTGAGTTGGC AAAAGCGAAAATCACGGTGTTTCCGCACGACGTTTCGGCGGCGATTGCAG ACGGCAGCATGGACGTGAAGGAATGCTTGTTTCCGCTGGCACAGGGTGAA CAAGAAGTGCCAGCCGATGAAGAACTGGTGGAATGA back to topprotein sequence of Ggra5093.t1 >Ggra5093.t1 ID=Ggra5093.t1|Name=Ggra5093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MSPFVSNAPANPNNGYLLPDPPDDTVSRLRFSSTNAPFLAASSWNGTVRV WKVDPAVGNATAVSLTHDSAPILDLSWLSDNSTIIYAGASTRAHRWDLAT GTTEVVAAHDNSIRCTHDVSSINSFATAGWDSLLRYWDVRSPTGAPLLSV KLPERAYAMDARGPLMVLALADRKIAIYDVRKPSELYLERYTQLKYQTRC IAAWPDAMGYNVGGVEGKVSVENVQDSKSKQNYSFFCHKDKQGTMSSVNA IRFHYQSRAFCTAGSDGMLHFWDKDRKDRASMRRFQKMGQPICDMDFSSD GSMYAYAVGYDWLQGSSGRTNMESTKLLAFVAPLPSSRTPPRASASQKSD KRSGGATPRPAARPKRRPKRPPTAPDVKAYSIADTLRDSPHLNSTLLTAM RDYFGDDGREVQDYMKRPRTADGEPMFRCVIVGSGGRELQLAKTLCDSGV ISGLYYCPDHDVACDIEMNKYAQSTTVSAEKRPKDAVRFAKWCVADAVFI GPDRQQHISREEEVELAKAKITVFPHDVSAAIADGSMDVKECLFPLAQGE QEVPADEELVE* back to topmRNA from alignment at tig00000069_pilon:442415..445260+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra5093.t1 ID=Ggra5093.t1|Name=Ggra5093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2846bp|location=Sequence derived from alignment at tig00000069_pilon:442415..445260+ (Gracilaria gracilis GNS1m male) ATGAGCCCTTTTGTATCAAACGCGCCAGCAAACCCAAACAACGGCTACTT
GCTTCCGGATCCGCCAGATGACACCGTCTCCCGACTACGTTTCTCCTCCA
CCAACGCCCCATTCCTGGCCGCCTCGTCGTGGAACGGCACCGTACGCGTG
TGGAAGGTCGACCCCGCCGTGGGAAACGCCACCGCCGTCTCGCTCACGCA
CGATTCCGCCCCCATTCTCGATCTCTCGTGGCTCAGCGACAACTCCACCA
TAATCTACGCCGGCGCCAGCACCAGGGCGCATCGCTGGGACCTGGCCACC
GGCACCACCGAAGTTGTTGCTGCGCACGACAATTCCATTCGATGCACGCA
TGACGTCAGCAGCATCAACTCCTTTGCCACTGCGGGGTGGGATAGTTTGT
TGAGATACTGGGATGTTCGTTCGCCTACCGGAGCGCCGCTTTTGAGCGTC
AAGCTGCCGGAGCGCGCTTATGCTATGGACGCGCGCGGCCCTTTGATGGT
TCTTGCGCTTGCGGACCGAAAGATTGCCATCTATGACGTTAGAAAACCGA
GCGAGCTTTACCTTGAGCGTTATACACAGCTCAAGTATCAAACGCGCTGT
ATAGCCGCATGGCCAGATGCCATGGGATACAATGTGGGTGGCGTGGAAGG
CAAGGTGAGCGTTGAAAACGTTCAGGATTCAAAGAGCAAACAGAATTACT
CCTTCTTCTGTCACAAGGATAAACAAGGAACAATGAGCTCTGTCAATGCC
ATTCGCTTTCATTATCAGAGCCGCGCGTTTTGTACGGCGGGCAGTGACGG
AATGCTTCACTTTTGGGACAAGGATCGAAAGGATCGTGCTTCTATGCGCC
GATTTCAGAAGATGGGGCAGCCAATATGCGACATGGACTTTAGTAGTGAT
GGCAGTATGTACGCGTATGCCGTAGGTTATGATTGGCTGCAAGGCTCCTC
GGGAAGGACTAATATGGAAAGCACGTACgtggtgctacactccatagaag
agggtgaattgcatctttcaaagggtggcggcggcggtggtggcggcggc
ggtggcggcggcggtggtggaggtggtggaggtggtggaggtggtggcag
cggcggatacagcggtagtcgcgggcgcgggagaggtagtagaagaAGGG
GGGGCAGTGGAAGAAGGTAAAAAGGACGTACGCGTTGGATGCGCCTTTGT
TTATTGCTTGCGCTCGAGATTGTTCAAGTCACGTAATACGGCGTGCAGAA
TGTCGGTCGGACTAAGTTGGGCACGTGATTGTACAGAATTGACCAGCTCT
GACTTTGAAACTCGTGGGTTCATGGCGCTTGCAAATCGCTTTTGCTTGCG
CGTTTCCAGGTTGTCTGGGATGAGTTTAAGCGCGTTTAAAACGTCTTGTT
GAGTGTGGATGGCATGCTGAAGCGCATGTGCCTCGGAATAATACAAGATG
GCGCTGAGATTCGGTAGGAaatcaacgtgttgcaacaaatctgttgtgtA
GGAAACGCTGGTATGGGTGTCGATGGGGCTCACGCCCACGATCAAGGCGT
GAATGTTTTCAGTTTGGAGGTGATGTTGAGCCATTCTCGAAAAGGCGGAC
GACAGTATCTTGGCGTCGGCCGAGGCAACGCCGGTGCGAGCGAGGATGCC
GAACGGACATGCGTGGCGTTGAGTGTCATCGGAGAGCGCGATTGATAGAT
GAGTGCGGGTGACGTCCAGAGAGGCCAGACGAGACACGGGCGTGATGTGT
GAACGCAGCGCCGCGACGGAGCGAAGAACGTTGAACGATGGCGCTGCGGC
GGCGCTCACTGCCTTGGCGGCGGCCATTTGGGCGAGCGATGCGGCGGCGA
CGCCACGGCGTGCGAACTTGGAAGGCGGTGCCGGTCGGCGGCGTTGATCC
GCCAACTTTCTGAGTGGCGAAGTGGTTGGCACCTGCCTGGTGCAATAAAA
AAAAAGAACGTGCGCCTGGCGTGCAATTCATCCCAAAATGTCAGTTTTGT
CACATCATGATGATCGCACGCGCAGCCGTTGCTGTGATCTCGTCGGCGCC
GCCCGTGCCGCCGTCAGACCATCGCCTCCCCTGCTGCACACACCTTGCAG
CACTCTCAGCCATGACTGCGTCATCATCCATGAGCAAGCTGCTCGCCTTC
GTGGCGCCGCTGCCTTCCTCGCGCACGCCGCCCCGTGCGTCCGCCTCGCA
GAAGAGCGACAAGCGCAGCGGTGGTGCGACGCCGCGGCCAGCGGCGCGGC
CGAAGCGACGGCCGAAGCGCCCGCCAACCGCGCCCGATGTGAAGGCGTAC
AGCATAGCAGACACGCTTCGCGACTCGCCGCACCTCAACAGCACGCTGCT
GACGGCGATGCGCGACTACTTTGGCGACGACGGCCGCGAGGTGCAGGACT
ACATGAAGCGGCCGCGCACGGCGGACGGCGAGCCCATGTTCCGCTGCGTC
ATCGTGGGCTCCGGCGGCAGGGAGCTGCAGCTGGCAAAGACGCTGTGCGA
CAGCGGCGTGATTAGCGGGCTGTACTACTGCCCGGACCATGACGTTGCTT
GCGACATTGAGATGAACAAGTATGCGCAGTCCACCACCGTGAGCGCGGAG
AAGCGGCCCAAGGACGCTGTGCGGTTTGCAAAGTGGTGCGTGGCGGACGC
GGTTTTCATCGGGCCGGACAGACAGCAGCACATCTCGAGGGAGGAGGAGG
TTGAGTTGGCAAAAGCGAAAATCACGGTGTTTCCGCACGACGTTTCGGCG
GCGATTGCAGACGGCAGCATGGACGTGAAGGAATGCTTGTTTCCGCTGGC
ACAGGGTGAACAAGAAGTGCCAGCCGATGAAGAACTGGTGGAATGA back to topCoding sequence (CDS) from alignment at tig00000069_pilon:442415..445260+ >Ggra5093.t1 ID=Ggra5093.t1|Name=Ggra5093.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000069_pilon:442415..445260+ (Gracilaria gracilis GNS1m male) ATGAGCCCTTTTGTATCAAACGCGCCAGCAAACCCAAACAACGGCTACTT GCTTCCGGATCCGCCAGATGACACCGTCTCCCGACTACGTTTCTCCTCCA CCAACGCCCCATTCCTGGCCGCCTCGTCGTGGAACGGCACCGTACGCGTG TGGAAGGTCGACCCCGCCGTGGGAAACGCCACCGCCGTCTCGCTCACGCA CGATTCCGCCCCCATTCTCGATCTCTCGTGGCTCAGCGACAACTCCACCA TAATCTACGCCGGCGCCAGCACCAGGGCGCATCGCTGGGACCTGGCCACC GGCACCACCGAAGTTGTTGCTGCGCACGACAATTCCATTCGATGCACGCA TGACGTCAGCAGCATCAACTCCTTTGCCACTGCGGGGTGGGATAGTTTGT TGAGATACTGGGATGTTCGTTCGCCTACCGGAGCGCCGCTTTTGAGCGTC AAGCTGCCGGAGCGCGCTTATGCTATGGACGCGCGCGGCCCTTTGATGGT TCTTGCGCTTGCGGACCGAAAGATTGCCATCTATGACGTTAGAAAACCGA GCGAGCTTTACCTTGAGCGTTATACACAGCTCAAGTATCAAACGCGCTGT ATAGCCGCATGGCCAGATGCCATGGGATACAATGTGGGTGGCGTGGAAGG CAAGGTGAGCGTTGAAAACGTTCAGGATTCAAAGAGCAAACAGAATTACT CCTTCTTCTGTCACAAGGATAAACAAGGAACAATGAGCTCTGTCAATGCC ATTCGCTTTCATTATCAGAGCCGCGCGTTTTGTACGGCGGGCAGTGACGG AATGCTTCACTTTTGGGACAAGGATCGAAAGGATCGTGCTTCTATGCGCC GATTTCAGAAGATGGGGCAGCCAATATGCGACATGGACTTTAGTAGTGAT GGCAGTATGTACGCGTATGCCGTAGGTTATGATTGGCTGCAAGGCTCCTC GGGAAGGACTAATATGGAAAGCACCAAGCTGCTCGCCTTCGTGGCGCCGC TGCCTTCCTCGCGCACGCCGCCCCGTGCGTCCGCCTCGCAGAAGAGCGAC AAGCGCAGCGGTGGTGCGACGCCGCGGCCAGCGGCGCGGCCGAAGCGACG GCCGAAGCGCCCGCCAACCGCGCCCGATGTGAAGGCGTACAGCATAGCAG ACACGCTTCGCGACTCGCCGCACCTCAACAGCACGCTGCTGACGGCGATG CGCGACTACTTTGGCGACGACGGCCGCGAGGTGCAGGACTACATGAAGCG GCCGCGCACGGCGGACGGCGAGCCCATGTTCCGCTGCGTCATCGTGGGCT CCGGCGGCAGGGAGCTGCAGCTGGCAAAGACGCTGTGCGACAGCGGCGTG ATTAGCGGGCTGTACTACTGCCCGGACCATGACGTTGCTTGCGACATTGA GATGAACAAGTATGCGCAGTCCACCACCGTGAGCGCGGAGAAGCGGCCCA AGGACGCTGTGCGGTTTGCAAAGTGGTGCGTGGCGGACGCGGTTTTCATC GGGCCGGACAGACAGCAGCACATCTCGAGGGAGGAGGAGGTTGAGTTGGC AAAAGCGAAAATCACGGTGTTTCCGCACGACGTTTCGGCGGCGATTGCAG ACGGCAGCATGGACGTGAAGGAATGCTTGTTTCCGCTGGCACAGGGTGAA CAAGAAGTGCCAGCCGATGAAGAACTGGTGGAATGA back to top
|