Ggra5077.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5077.t1
Unique NameGgra5077.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:405777..406730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog643473.KB235930_gene2075
PFAMsDUF3598
Max annot lvl1117|Cyanobacteria
Evalue3.6e-26
EggNOG OGs28I16@1|root,2Z85V@2|Bacteria,1G0X7@1117|Cyanobacteria,1HJSI@1161|Nostocales
DescriptionDomain of unknown function (DUF3598)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5077Ggra5077Gracilaria gracilis GNS1m malegenetig00000069_pilon 405777..406730 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5077.t1.stop1Ggra5077.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 405777..405779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5077.t1.CDS1Ggra5077.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 405777..406730 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5077.t1.exon1Ggra5077.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 405777..406730 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5077.t1.start1Ggra5077.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 406728..406730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5077.t1Ggra5077.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 405777..406730 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5077.t1 ID=Ggra5077.t1|Name=Ggra5077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MEIGRGPPNFLPGGGQLSNRQLNEESWEGYLKNLGTWIGKRALSNPRGKV
LIDLPTRTTAERFRTPQGEDFVLWRFSVRTADGVDEAEEEWSRSELADLG
ALAVDGSFSVGGDVFCGERMTVDQCLVDDSCRIRTTHAFDWEGCISGIIA
TRERIVPKNEPLEKTLKLSFVEPAAWRSPRVLFDYILGLWEGKGISVHTR
TGQVYKLTSRLKINQTIEGRVTESSVLRIGDDGPSRVYDASGRIDGNFII
YAMSNVQVFLLPGGVSVASPIRIRKGRPFTVESAFLMRPDCRKRVLRVYN
NQCEWVNTVFINERRVG*
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spliced messenger RNA

>Ggra5077.t1 ID=Ggra5077.t1|Name=Ggra5077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000069_pilon:405777..406730- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATCGGAAGAGGTCCTCCCAATTTCTTGCCTGGAGGTGGGCAATT
GAGCAACCGTCAGCTCAATGAGGAGTCTTGGGAGGGATATCTGAAGAATC
TTGGGACGTGGATTGGGAAGCGAGCCCTGTCAAATCCCAGGGGCAAGGTT
CTAATTGACTTACCGACTCGCACAACCGCGGAAAGATTTCGAACACCGCA
AGGAGAAGATTTTGTGTTATGGCGTTTCTCGGTGCGGACTGCGGATGGAG
TTGATGAAGCCGAAGAAGAGTGGTCTCGGTCTGAACTTGCGGATTTGGGT
GCTCTTGCCGTGGATGGTAGTTTTTCCGTAGGTGGTGATGTTTTTTGCGG
TGAACGTATGACTGTTGACCAATGTCTAGTAGACGACTCATGTCGCATTC
GGACAACACACGCCTTTGACTGGGAAGGATGTATTTCAGGGATAATTGCA
ACAAGGGAACGAATTGTCCCGAAGAATGAACCTTTAGAGAAAACTCTGAA
ACTCAGTTTTGTAGAGCCAGCTGCATGGAGAAGCCCACGAGTACTGTTTG
ATTACATACTCGGACTGTGGGAAGGGAAAGGGATTTCAGTCCATACTCGA
ACTGGTCAAGTCTATAAGCTAACTTCCAGACTGAAAATTAACCAAACAAT
CGAAGGTAGAGTGACAGAGAGCTCCGTTCTAAGAATTGGAGATGATGGAC
CAAGTCGCGTCTATGATGCTTCTGGACGTATCGATGGAAATTTTATCATA
TATGCGATGTCGAACGTTCAAGTATTTCTGTTACCGGGGGGTGTTTCAGT
AGCTTCCCCCATAAGAATTCGAAAAGGTAGGCCTTTCACGGTCGAGTCTG
CGTTCTTGATGAGGCCAGACTGCAGAAAGCGGGTGCTTCGAGTTTATAAC
AACCAGTGTGAATGGGTTAATACAGTCTTTATCAACGAAAGACGAGTCGG
ATGA
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protein sequence of Ggra5077.t1

>Ggra5077.t1 ID=Ggra5077.t1|Name=Ggra5077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MEIGRGPPNFLPGGGQLSNRQLNEESWEGYLKNLGTWIGKRALSNPRGKV
LIDLPTRTTAERFRTPQGEDFVLWRFSVRTADGVDEAEEEWSRSELADLG
ALAVDGSFSVGGDVFCGERMTVDQCLVDDSCRIRTTHAFDWEGCISGIIA
TRERIVPKNEPLEKTLKLSFVEPAAWRSPRVLFDYILGLWEGKGISVHTR
TGQVYKLTSRLKINQTIEGRVTESSVLRIGDDGPSRVYDASGRIDGNFII
YAMSNVQVFLLPGGVSVASPIRIRKGRPFTVESAFLMRPDCRKRVLRVYN
NQCEWVNTVFINERRVG*
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mRNA from alignment at tig00000069_pilon:405777..406730-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5077.t1 ID=Ggra5077.t1|Name=Ggra5077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000069_pilon:405777..406730- (Gracilaria gracilis GNS1m male)
ATGGAAATCGGAAGAGGTCCTCCCAATTTCTTGCCTGGAGGTGGGCAATT
GAGCAACCGTCAGCTCAATGAGGAGTCTTGGGAGGGATATCTGAAGAATC
TTGGGACGTGGATTGGGAAGCGAGCCCTGTCAAATCCCAGGGGCAAGGTT
CTAATTGACTTACCGACTCGCACAACCGCGGAAAGATTTCGAACACCGCA
AGGAGAAGATTTTGTGTTATGGCGTTTCTCGGTGCGGACTGCGGATGGAG
TTGATGAAGCCGAAGAAGAGTGGTCTCGGTCTGAACTTGCGGATTTGGGT
GCTCTTGCCGTGGATGGTAGTTTTTCCGTAGGTGGTGATGTTTTTTGCGG
TGAACGTATGACTGTTGACCAATGTCTAGTAGACGACTCATGTCGCATTC
GGACAACACACGCCTTTGACTGGGAAGGATGTATTTCAGGGATAATTGCA
ACAAGGGAACGAATTGTCCCGAAGAATGAACCTTTAGAGAAAACTCTGAA
ACTCAGTTTTGTAGAGCCAGCTGCATGGAGAAGCCCACGAGTACTGTTTG
ATTACATACTCGGACTGTGGGAAGGGAAAGGGATTTCAGTCCATACTCGA
ACTGGTCAAGTCTATAAGCTAACTTCCAGACTGAAAATTAACCAAACAAT
CGAAGGTAGAGTGACAGAGAGCTCCGTTCTAAGAATTGGAGATGATGGAC
CAAGTCGCGTCTATGATGCTTCTGGACGTATCGATGGAAATTTTATCATA
TATGCGATGTCGAACGTTCAAGTATTTCTGTTACCGGGGGGTGTTTCAGT
AGCTTCCCCCATAAGAATTCGAAAAGGTAGGCCTTTCACGGTCGAGTCTG
CGTTCTTGATGAGGCCAGACTGCAGAAAGCGGGTGCTTCGAGTTTATAAC
AACCAGTGTGAATGGGTTAATACAGTCTTTATCAACGAAAGACGAGTCGG
ATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:405777..406730-

>Ggra5077.t1 ID=Ggra5077.t1|Name=Ggra5077.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000069_pilon:405777..406730- (Gracilaria gracilis GNS1m male)
ATGGAAATCGGAAGAGGTCCTCCCAATTTCTTGCCTGGAGGTGGGCAATT
GAGCAACCGTCAGCTCAATGAGGAGTCTTGGGAGGGATATCTGAAGAATC
TTGGGACGTGGATTGGGAAGCGAGCCCTGTCAAATCCCAGGGGCAAGGTT
CTAATTGACTTACCGACTCGCACAACCGCGGAAAGATTTCGAACACCGCA
AGGAGAAGATTTTGTGTTATGGCGTTTCTCGGTGCGGACTGCGGATGGAG
TTGATGAAGCCGAAGAAGAGTGGTCTCGGTCTGAACTTGCGGATTTGGGT
GCTCTTGCCGTGGATGGTAGTTTTTCCGTAGGTGGTGATGTTTTTTGCGG
TGAACGTATGACTGTTGACCAATGTCTAGTAGACGACTCATGTCGCATTC
GGACAACACACGCCTTTGACTGGGAAGGATGTATTTCAGGGATAATTGCA
ACAAGGGAACGAATTGTCCCGAAGAATGAACCTTTAGAGAAAACTCTGAA
ACTCAGTTTTGTAGAGCCAGCTGCATGGAGAAGCCCACGAGTACTGTTTG
ATTACATACTCGGACTGTGGGAAGGGAAAGGGATTTCAGTCCATACTCGA
ACTGGTCAAGTCTATAAGCTAACTTCCAGACTGAAAATTAACCAAACAAT
CGAAGGTAGAGTGACAGAGAGCTCCGTTCTAAGAATTGGAGATGATGGAC
CAAGTCGCGTCTATGATGCTTCTGGACGTATCGATGGAAATTTTATCATA
TATGCGATGTCGAACGTTCAAGTATTTCTGTTACCGGGGGGTGTTTCAGT
AGCTTCCCCCATAAGAATTCGAAAAGGTAGGCCTTTCACGGTCGAGTCTG
CGTTCTTGATGAGGCCAGACTGCAGAAAGCGGGTGCTTCGAGTTTATAAC
AACCAGTGTGAATGGGTTAATACAGTCTTTATCAACGAAAGACGAGTCGG
ATGA
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