Ggra5055.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5055.t1
Unique Name	Ggra5055.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	432

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:354269..355564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5055	Ggra5055	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 354269..355564 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5055.t1.start1	Ggra5055.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 354269..354271 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5055.t1.CDS1	Ggra5055.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 354269..355564 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5055.t1.exon1	Ggra5055.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 354269..355564 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5055.t1.stop1	Ggra5055.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 355562..355564 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5055.t1	Ggra5055.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 354269..355564 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:354269..355564+
coding sequence from alignment at tig00000069_pilon:354269..355564+

mRNA sequence

>Ggra5055.t1 ID=Ggra5055.t1|Name=Ggra5055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MAHITHKYDLHAKSSRRTLNQTFFLLAMLAIGLLYALFGTKTNHMLRISI
GNRAHHQKYNNIQNNMFQISIPKLKPQALENNHRTLFLLPNKENSCTWQY
NYVCKFWFYVRCYVFSAFPNVRMLSEGSQGLEDLKQQAKEGDIAIVIWRS
RKHLEFPNNLGQLLEWQQSASQTNHTPRLRVGVLHVANEVNRTSWQWYLK
PHFIIRNYWIPDMPAHATYIPLGPQFPNQCKPWATDDDVWMSDGKQPPCS
CNKFSFPRASSRKYLWHFSGSLRKRRSRLVKMLRSSKSLKSKGYIQVSKK
FGGEGQFGSKKSDNPKTEYLKSILDSQFVFAPCGNAMETHRIYEAIALGA
IPVIENCQQELSYFFPFRELLIDGDVDNMIEFVKRFKDKQDEIDLLQQRV
QQWWRQYSIDFAQNVSKTITQHVPPSKRTAP*

spliced messenger RNA

>Ggra5055.t1 ID=Ggra5055.t1|Name=Ggra5055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000069_pilon:354269..355564+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACATATCACACACAAATATGATCTGCACGCAAAGAGTTCCCGCAG
AACTTTGAATCAAACTTTTTTCCTGCTGGCCATGCTGGCCATTGGATTGT
TGTATGCTTTATTCGGAACCAAAACGAATCATATGCTACGCATTTCAATC
GGCAATAGAGCTCATCATCAGAAGTACAACAATATCCAAAACAACATGTT
TCAAATCTCGATTCCGAAGTTGAAACCACAAGCACTTGAGAACAACCATC
GTACCTTATTTCTTCTTCCAAACAAGGAGAATTCATGTACATGGCAATAT
AACTATGTATGCAAGTTTTGGTTCTATGTTCGATGTTATGTATTCAGTGC
GTTTCCAAACGTGCGAATGCTTTCGGAAGGTAGCCAGGGGCTAGAGGACT
TGAAACAGCAAGCAAAAGAAGGTGATATAGCCATTGTAATATGGAGAAGT
AGAAAGCATTTAGAATTTCCAAACAATCTTGGTCAATTACTTGAATGGCA
GCAATCTGCCTCTCAAACAAATCACACTCCTAGGCTTCGTGTTGGTGTTC
TGCATGTCGCCAATGAAGTCAACCGCACTTCATGGCAGTGGTATCTTAAA
CCTCATTTCATCATCAGGAATTATTGGATACCGGATATGCCTGCACATGC
CACGTACATTCCCCTTGGACCTCAGTTTCCAAACCAATGTAAACCGTGGG
CAACAGACGATGACGTATGGATGAGTGATGGCAAGCAACCTCCATGTTCG
TGCAACAAGTTCTCCTTTCCAAGAGCATCGTCTAGAAAGTATCTCTGGCA
CTTCAGTGGAAGTTTAAGAAAGCGACGAAGCCGTCTCGTCAAGATGTTAC
GCTCTTCAAAGTCCCTCAAATCAAAAGGCTACATTCAAGTGTCGAAGAAA
TTCGGAGGCGAAGGCCAGTTTGGCAGCAAAAAGAGCGATAATCCAAAGAC
AGAATATCTAAAAAGCATTCTCGACAGCCAGTTCGTGTTCGCCCCATGCG
GAAATGCCATGGAAACACATCGAATCTACGAAGCCATTGCACTCGGTGCA
ATTCCAGTTATCGAAAACTGCCAACAAGAGCTTTCATATTTCTTCCCATT
CAGGGAGTTACTAATAGACGGCGACGTCGACAACATGATCGAGTTCGTCA
AACGTTTCAAAGACAAACAAGACGAGATCGATCTGCTCCAACAAAGAGTA
CAACAATGGTGGCGACAATACTCGATAGATTTTGCACAAAACGTGAGCAA
AACAATCACACAACATGTGCCGCCGTCGAAGCGAACAGCTCCATAG

protein sequence of Ggra5055.t1

>Ggra5055.t1 ID=Ggra5055.t1|Name=Ggra5055.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MAHITHKYDLHAKSSRRTLNQTFFLLAMLAIGLLYALFGTKTNHMLRISI
GNRAHHQKYNNIQNNMFQISIPKLKPQALENNHRTLFLLPNKENSCTWQY
NYVCKFWFYVRCYVFSAFPNVRMLSEGSQGLEDLKQQAKEGDIAIVIWRS
RKHLEFPNNLGQLLEWQQSASQTNHTPRLRVGVLHVANEVNRTSWQWYLK
PHFIIRNYWIPDMPAHATYIPLGPQFPNQCKPWATDDDVWMSDGKQPPCS
CNKFSFPRASSRKYLWHFSGSLRKRRSRLVKMLRSSKSLKSKGYIQVSKK
FGGEGQFGSKKSDNPKTEYLKSILDSQFVFAPCGNAMETHRIYEAIALGA
IPVIENCQQELSYFFPFRELLIDGDVDNMIEFVKRFKDKQDEIDLLQQRV
QQWWRQYSIDFAQNVSKTITQHVPPSKRTAP*

mRNA from alignment at tig00000069_pilon:354269..355564+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5055.t1 ID=Ggra5055.t1|Name=Ggra5055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000069_pilon:354269..355564+ (Gracilaria gracilis GNS1m male)
ATGGCACATATCACACACAAATATGATCTGCACGCAAAGAGTTCCCGCAG
AACTTTGAATCAAACTTTTTTCCTGCTGGCCATGCTGGCCATTGGATTGT
TGTATGCTTTATTCGGAACCAAAACGAATCATATGCTACGCATTTCAATC
GGCAATAGAGCTCATCATCAGAAGTACAACAATATCCAAAACAACATGTT
TCAAATCTCGATTCCGAAGTTGAAACCACAAGCACTTGAGAACAACCATC
GTACCTTATTTCTTCTTCCAAACAAGGAGAATTCATGTACATGGCAATAT
AACTATGTATGCAAGTTTTGGTTCTATGTTCGATGTTATGTATTCAGTGC
GTTTCCAAACGTGCGAATGCTTTCGGAAGGTAGCCAGGGGCTAGAGGACT
TGAAACAGCAAGCAAAAGAAGGTGATATAGCCATTGTAATATGGAGAAGT
AGAAAGCATTTAGAATTTCCAAACAATCTTGGTCAATTACTTGAATGGCA
GCAATCTGCCTCTCAAACAAATCACACTCCTAGGCTTCGTGTTGGTGTTC
TGCATGTCGCCAATGAAGTCAACCGCACTTCATGGCAGTGGTATCTTAAA
CCTCATTTCATCATCAGGAATTATTGGATACCGGATATGCCTGCACATGC
CACGTACATTCCCCTTGGACCTCAGTTTCCAAACCAATGTAAACCGTGGG
CAACAGACGATGACGTATGGATGAGTGATGGCAAGCAACCTCCATGTTCG
TGCAACAAGTTCTCCTTTCCAAGAGCATCGTCTAGAAAGTATCTCTGGCA
CTTCAGTGGAAGTTTAAGAAAGCGACGAAGCCGTCTCGTCAAGATGTTAC
GCTCTTCAAAGTCCCTCAAATCAAAAGGCTACATTCAAGTGTCGAAGAAA
TTCGGAGGCGAAGGCCAGTTTGGCAGCAAAAAGAGCGATAATCCAAAGAC
AGAATATCTAAAAAGCATTCTCGACAGCCAGTTCGTGTTCGCCCCATGCG
GAAATGCCATGGAAACACATCGAATCTACGAAGCCATTGCACTCGGTGCA
ATTCCAGTTATCGAAAACTGCCAACAAGAGCTTTCATATTTCTTCCCATT
CAGGGAGTTACTAATAGACGGCGACGTCGACAACATGATCGAGTTCGTCA
AACGTTTCAAAGACAAACAAGACGAGATCGATCTGCTCCAACAAAGAGTA
CAACAATGGTGGCGACAATACTCGATAGATTTTGCACAAAACGTGAGCAA
AACAATCACACAACATGTGCCGCCGTCGAAGCGAACAGCTCCATAG

Coding sequence (CDS) from alignment at tig00000069_pilon:354269..355564+

>Ggra5055.t1 ID=Ggra5055.t1|Name=Ggra5055.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000069_pilon:354269..355564+ (Gracilaria gracilis GNS1m male)
ATGGCACATATCACACACAAATATGATCTGCACGCAAAGAGTTCCCGCAG
AACTTTGAATCAAACTTTTTTCCTGCTGGCCATGCTGGCCATTGGATTGT
TGTATGCTTTATTCGGAACCAAAACGAATCATATGCTACGCATTTCAATC
GGCAATAGAGCTCATCATCAGAAGTACAACAATATCCAAAACAACATGTT
TCAAATCTCGATTCCGAAGTTGAAACCACAAGCACTTGAGAACAACCATC
GTACCTTATTTCTTCTTCCAAACAAGGAGAATTCATGTACATGGCAATAT
AACTATGTATGCAAGTTTTGGTTCTATGTTCGATGTTATGTATTCAGTGC
GTTTCCAAACGTGCGAATGCTTTCGGAAGGTAGCCAGGGGCTAGAGGACT
TGAAACAGCAAGCAAAAGAAGGTGATATAGCCATTGTAATATGGAGAAGT
AGAAAGCATTTAGAATTTCCAAACAATCTTGGTCAATTACTTGAATGGCA
GCAATCTGCCTCTCAAACAAATCACACTCCTAGGCTTCGTGTTGGTGTTC
TGCATGTCGCCAATGAAGTCAACCGCACTTCATGGCAGTGGTATCTTAAA
CCTCATTTCATCATCAGGAATTATTGGATACCGGATATGCCTGCACATGC
CACGTACATTCCCCTTGGACCTCAGTTTCCAAACCAATGTAAACCGTGGG
CAACAGACGATGACGTATGGATGAGTGATGGCAAGCAACCTCCATGTTCG
TGCAACAAGTTCTCCTTTCCAAGAGCATCGTCTAGAAAGTATCTCTGGCA
CTTCAGTGGAAGTTTAAGAAAGCGACGAAGCCGTCTCGTCAAGATGTTAC
GCTCTTCAAAGTCCCTCAAATCAAAAGGCTACATTCAAGTGTCGAAGAAA
TTCGGAGGCGAAGGCCAGTTTGGCAGCAAAAAGAGCGATAATCCAAAGAC
AGAATATCTAAAAAGCATTCTCGACAGCCAGTTCGTGTTCGCCCCATGCG
GAAATGCCATGGAAACACATCGAATCTACGAAGCCATTGCACTCGGTGCA
ATTCCAGTTATCGAAAACTGCCAACAAGAGCTTTCATATTTCTTCCCATT
CAGGGAGTTACTAATAGACGGCGACGTCGACAACATGATCGAGTTCGTCA
AACGTTTCAAAGACAAACAAGACGAGATCGATCTGCTCCAACAAAGAGTA
CAACAATGGTGGCGACAATACTCGATAGATTTTGCACAAAACGTGAGCAA
AACAATCACACAACATGTGCCGCCGTCGAAGCGAACAGCTCCATAG