Ggra5046.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5046.t1
Unique NameGgra5046.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:329992..330834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr35154
Max annot lvl2836|Bacillariophyta
Evalue2.55e-28
EggNOG OGs2E3WW@1|root,2SAWH@2759|Eukaryota,2XC8Z@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5046Ggra5046Gracilaria gracilis GNS1m malegenetig00000069_pilon 329992..330834 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5046.t1.stop1Ggra5046.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 329992..329994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5046.t1.CDS1Ggra5046.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 329992..330834 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5046.t1.exon1Ggra5046.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 329992..330834 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5046.t1.start1Ggra5046.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 330832..330834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5046.t1Ggra5046.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 329992..330834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5046.t1 ID=Ggra5046.t1|Name=Ggra5046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MNSVTRPQTAFLTMSAAPMSRRSALRLAGLSFAAICAPRPIQPAFALKPG
KPSKEKLLQGLREEKTPEEIEEEKARVAEEKKQRLAKQRELQAAAERKKA
GLQDDRQNEAEIESNLRGQYYFPTARKRYLPRVKLAWDMLPMAEKAATES
QWPAVSDFSAGELTNAILPMKLYASSLAGGGLSINAKFIEGMNSQTDLYE
RAVKQLAKAAKRKDTSVALGTLTDMRSAITKYRQLGHLEAPDFGIGEIPT
DTRVGSGFGNNNSALYRKNKTVQEVAAGQR*
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spliced messenger RNA

>Ggra5046.t1 ID=Ggra5046.t1|Name=Ggra5046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000069_pilon:329992..330834- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCGTAACTCGACCTCAAACTGCTTTCTTAACAATGAGCGCGGC
TCCAATGTCACGACGAAGTGCACTTCGACTGGCAGGCTTAAGTTTTGCTG
CAATTTGTGCTCCACGGCCCATACAACCAGCCTTTGCTCTCAAGCCCGGA
AAACCAAGCAAGGAAAAGCTGCTACAAGGACTACGAGAAGAGAAAACTCC
AGAAGAAATCGAAGAAGAAAAAGCAAGAGTTGCTGAAGAGAAGAAGCAGC
GTTTAGCCAAGCAACGCGAGCTTCAGGCTGCAGCGGAAAGAAAGAAAGCG
GGCCTTCAGGACGATCGCCAGAACGAAGCCGAGATTGAAAGCAACTTGAG
GGGTCAATACTATTTCCCCACAGCGAGAAAACGATATCTTCCTAGAGTGA
AGCTAGCATGGGATATGCTCCCCATGGCGGAGAAAGCCGCCACTGAAAGC
CAGTGGCCAGCGGTATCAGATTTCTCTGCTGGTGAGTTGACCAACGCTAT
CCTTCCAATGAAGCTTTACGCCAGCTCGCTAGCTGGCGGTGGTTTGAGTA
TCAACGCGAAATTCATCGAAGGTATGAACTCGCAAACAGACCTATACGAA
CGGGCAGTGAAACAACTTGCAAAAGCAGCCAAGCGCAAGGATACGTCCGT
TGCTTTGGGAACGTTAACCGATATGAGATCTGCAATCACAAAATATCGTC
AGCTCGGTCATCTTGAAGCTCCTGATTTTGGAATTGGGGAGATACCAACA
GACACTCGCGTGGGATCAGGGTTTGGAAATAATAATTCTGCGCTATATCG
CAAGAATAAAACGGTGCAAGAAGTTGCAGCAGGTCAGAGATGA
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protein sequence of Ggra5046.t1

>Ggra5046.t1 ID=Ggra5046.t1|Name=Ggra5046.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MNSVTRPQTAFLTMSAAPMSRRSALRLAGLSFAAICAPRPIQPAFALKPG
KPSKEKLLQGLREEKTPEEIEEEKARVAEEKKQRLAKQRELQAAAERKKA
GLQDDRQNEAEIESNLRGQYYFPTARKRYLPRVKLAWDMLPMAEKAATES
QWPAVSDFSAGELTNAILPMKLYASSLAGGGLSINAKFIEGMNSQTDLYE
RAVKQLAKAAKRKDTSVALGTLTDMRSAITKYRQLGHLEAPDFGIGEIPT
DTRVGSGFGNNNSALYRKNKTVQEVAAGQR*
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mRNA from alignment at tig00000069_pilon:329992..330834-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5046.t1 ID=Ggra5046.t1|Name=Ggra5046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000069_pilon:329992..330834- (Gracilaria gracilis GNS1m male)
ATGAACTCCGTAACTCGACCTCAAACTGCTTTCTTAACAATGAGCGCGGC
TCCAATGTCACGACGAAGTGCACTTCGACTGGCAGGCTTAAGTTTTGCTG
CAATTTGTGCTCCACGGCCCATACAACCAGCCTTTGCTCTCAAGCCCGGA
AAACCAAGCAAGGAAAAGCTGCTACAAGGACTACGAGAAGAGAAAACTCC
AGAAGAAATCGAAGAAGAAAAAGCAAGAGTTGCTGAAGAGAAGAAGCAGC
GTTTAGCCAAGCAACGCGAGCTTCAGGCTGCAGCGGAAAGAAAGAAAGCG
GGCCTTCAGGACGATCGCCAGAACGAAGCCGAGATTGAAAGCAACTTGAG
GGGTCAATACTATTTCCCCACAGCGAGAAAACGATATCTTCCTAGAGTGA
AGCTAGCATGGGATATGCTCCCCATGGCGGAGAAAGCCGCCACTGAAAGC
CAGTGGCCAGCGGTATCAGATTTCTCTGCTGGTGAGTTGACCAACGCTAT
CCTTCCAATGAAGCTTTACGCCAGCTCGCTAGCTGGCGGTGGTTTGAGTA
TCAACGCGAAATTCATCGAAGGTATGAACTCGCAAACAGACCTATACGAA
CGGGCAGTGAAACAACTTGCAAAAGCAGCCAAGCGCAAGGATACGTCCGT
TGCTTTGGGAACGTTAACCGATATGAGATCTGCAATCACAAAATATCGTC
AGCTCGGTCATCTTGAAGCTCCTGATTTTGGAATTGGGGAGATACCAACA
GACACTCGCGTGGGATCAGGGTTTGGAAATAATAATTCTGCGCTATATCG
CAAGAATAAAACGGTGCAAGAAGTTGCAGCAGGTCAGAGATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:329992..330834-

>Ggra5046.t1 ID=Ggra5046.t1|Name=Ggra5046.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000069_pilon:329992..330834- (Gracilaria gracilis GNS1m male)
ATGAACTCCGTAACTCGACCTCAAACTGCTTTCTTAACAATGAGCGCGGC
TCCAATGTCACGACGAAGTGCACTTCGACTGGCAGGCTTAAGTTTTGCTG
CAATTTGTGCTCCACGGCCCATACAACCAGCCTTTGCTCTCAAGCCCGGA
AAACCAAGCAAGGAAAAGCTGCTACAAGGACTACGAGAAGAGAAAACTCC
AGAAGAAATCGAAGAAGAAAAAGCAAGAGTTGCTGAAGAGAAGAAGCAGC
GTTTAGCCAAGCAACGCGAGCTTCAGGCTGCAGCGGAAAGAAAGAAAGCG
GGCCTTCAGGACGATCGCCAGAACGAAGCCGAGATTGAAAGCAACTTGAG
GGGTCAATACTATTTCCCCACAGCGAGAAAACGATATCTTCCTAGAGTGA
AGCTAGCATGGGATATGCTCCCCATGGCGGAGAAAGCCGCCACTGAAAGC
CAGTGGCCAGCGGTATCAGATTTCTCTGCTGGTGAGTTGACCAACGCTAT
CCTTCCAATGAAGCTTTACGCCAGCTCGCTAGCTGGCGGTGGTTTGAGTA
TCAACGCGAAATTCATCGAAGGTATGAACTCGCAAACAGACCTATACGAA
CGGGCAGTGAAACAACTTGCAAAAGCAGCCAAGCGCAAGGATACGTCCGT
TGCTTTGGGAACGTTAACCGATATGAGATCTGCAATCACAAAATATCGTC
AGCTCGGTCATCTTGAAGCTCCTGATTTTGGAATTGGGGAGATACCAACA
GACACTCGCGTGGGATCAGGGTTTGGAAATAATAATTCTGCGCTATATCG
CAAGAATAAAACGGTGCAAGAAGTTGCAGCAGGTCAGAGATGA
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