Ggra5015.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5015.t1
Unique NameGgra5015.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:59446..61275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5015Ggra5015Gracilaria gracilis GNS1m malegenetig00000069_pilon 59446..61275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5015.t1.stop1Ggra5015.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 59446..59448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5015.t1.CDS1Ggra5015.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 59446..61275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5015.t1.exon1Ggra5015.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 59446..61275 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5015.t1.start1Ggra5015.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 61273..61275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5015.t1Ggra5015.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 59446..61275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5015.t1 ID=Ggra5015.t1|Name=Ggra5015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=610bp
MDINRIYDEEVKKYEEERTKCEDVAFVEKQTPTGKSYKRALGASATWYVM
ALGFSVVMNYGLGAAVAGTIATPILGVLGTIAVVAGVVTTLTSGAANVVR
HAGLGWAPYTFNRNYVEKTFKSSNTRNIRQAAAYVAYTKAILQHKATDEN
QGSDFFKMKISMMDLSIHGDDEKAKRMTFYSQLGKAISEGDANPWLKASE
GVVSSQISQVVLRGLSRIMNANNLTESVDCLLDDVNWKSLGKKKSPMTGK
YIDPEENIPYVALSYKQEGDTFKLGRSQARQAVERAALIAESLTGKKEFR
IWVDQLVHGGGQEWVAIGLLPYLLMPVVQTDQAISYTAPRSREESTWISL
EPINALLRYWQMRGVRTDQASYTAPRSRKESTWISLEHICASAATTTQLT
KTGIFIDLANTRPLSESLSAVAEVLSWHLRSDRIHSTIRESDESWLSLWC
KGVLHGRQTEYMYEGIREELGADHNLLAGGKKWSFAMAARTLNCTGNALM
TRYLASKRKAERLTWTDECLLLSEAPMMVHREKLREASSFVEGIRDERKY
LLVMTDFCNYEVWTEVEVSERNGVYRPLVVKHANQEVLRSWQDLLETSTR
TPLKDLQIE*
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spliced messenger RNA

>Ggra5015.t1 ID=Ggra5015.t1|Name=Ggra5015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1830bp|location=Sequence derived from alignment at tig00000069_pilon:59446..61275- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATAAACCGTATCTATGATGAAGAAGTCAAAAAATACGAGGAGGA
AAGGACTAAATGTGAAGACGTGGCTTTTGTTGAGAAACAGACACCAACAG
GCAAGTCCTACAAACGAGCACTTGGAGCTTCCGCCACATGGTACGTCATG
GCTCTTGGATTTTCAGTGGTTATGAACTATGGTCTAGGCGCTGCAGTCGC
TGGGACTATAGCAACACCTATACTAGGCGTGTTGGGCACGATTGCTGTTG
TGGCGGGTGTTGTAACAACCTTGACGAGCGGAGCCGCAAACGTAGTACGA
CACGCCGGGCTTGGATGGGCCCCTTACACATTCAACCGGAATTACGTGGA
GAAAACTTTCAAGTCAAGCAATACTCGTAATATTCGTCAAGCTGCGGCTT
ACGTAGCTTATACTAAGGCCATATTACAACACAAAGCAACTGATGAGAAT
CAGGGGTCTGATTTCTTCAAGATGAAAATTAGCATGATGGATCTATCTAT
CCATGGCGATGACGAGAAGGCGAAACGAATGACTTTCTACAGTCAGTTAG
GGAAGGCAATTTCCGAGGGAGACGCAAATCCATGGTTGAAAGCTTCCGAA
GGGGTAGTTAGCTCGCAGATATCACAAGTTGTTCTCAGAGGTTTGTCGCG
CATTATGAACGCAAACAATCTGACAGAGAGTGTGGACTGTTTACTCGATG
ATGTGAATTGGAAGTCGCTTGGCAAAAAGAAATCGCCCATGACTGGGAAG
TACATTGACCCGGAAGAAAACATCCCGTACGTGGCACTTTCTTACAAACA
GGAAGGAGACACCTTTAAGTTGGGGAGAAGTCAGGCGCGGCAGGCAGTCG
AAAGAGCCGCACTCATAGCGGAGTCCCTGACAGGAAAGAAAGAATTCAGA
ATATGGGTCGACCAACTGGTACACGGTGGCGGGCAAGAATGGGTGGCAAT
AGGTCTATTACCATATTTGCTGATGCCAGTTGTGCAAACTGATCAAGCAA
TCAGCTATACGGCGCCTCGCAGCCGAGAGGAAAGCACTTGGATCTCGCTG
GAGCCCATCAATGCTCTATTACGATACTGGCAGATGCGAGGTGTGCGAAC
TGATCAAGCAAGCTATACGGCGCCTCGCAGCCGAAAGGAAAGCACTTGGA
TCTCACTGGAGCACATCTGTGCATCTGCAGCCACTACTACTCAGCTAACG
AAGACAGGTATATTCATAGACCTAGCAAATACAAGACCTTTATCGGAGTC
TCTCTCTGCTGTGGCAGAAGTACTATCGTGGCACCTGAGGAGTGACAGGA
TTCACTCCACCATTAGAGAGAGTGACGAGAGTTGGCTTTCACTCTGGTGT
AAAGGTGTACTGCACGGCCGACAAACAGAATACATGTACGAAGGTATCAG
AGAAGAATTAGGTGCGGATCACAACTTGCTAGCAGGCGGAAAAAAGTGGT
CATTTGCAATGGCAGCGAGAACATTGAACTGTACGGGCAACGCATTGATG
ACCAGATACCTCGCCTCTAAACGTAAGGCTGAGAGACTGACATGGACAGA
TGAATGTTTGCTACTTAGTGAAGCGCCTATGATGGTACACCGAGAAAAAC
TACGCGAGGCGAGTTCTTTTGTGGAAGGAATTCGTGATGAGCGGAAGTAC
CTTCTTGTAATGACGGATTTTTGCAATTACGAAGTGTGGACTGAGGTTGA
AGTGAGTGAACGCAATGGCGTGTACCGCCCGTTGGTTGTGAAACACGCTA
ACCAAGAAGTCCTACGCTCTTGGCAAGATTTACTCGAGACGAGTACAAGA
ACCCCTCTTAAGGATTTACAAATAGAGTAA
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protein sequence of Ggra5015.t1

>Ggra5015.t1 ID=Ggra5015.t1|Name=Ggra5015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=610bp
MDINRIYDEEVKKYEEERTKCEDVAFVEKQTPTGKSYKRALGASATWYVM
ALGFSVVMNYGLGAAVAGTIATPILGVLGTIAVVAGVVTTLTSGAANVVR
HAGLGWAPYTFNRNYVEKTFKSSNTRNIRQAAAYVAYTKAILQHKATDEN
QGSDFFKMKISMMDLSIHGDDEKAKRMTFYSQLGKAISEGDANPWLKASE
GVVSSQISQVVLRGLSRIMNANNLTESVDCLLDDVNWKSLGKKKSPMTGK
YIDPEENIPYVALSYKQEGDTFKLGRSQARQAVERAALIAESLTGKKEFR
IWVDQLVHGGGQEWVAIGLLPYLLMPVVQTDQAISYTAPRSREESTWISL
EPINALLRYWQMRGVRTDQASYTAPRSRKESTWISLEHICASAATTTQLT
KTGIFIDLANTRPLSESLSAVAEVLSWHLRSDRIHSTIRESDESWLSLWC
KGVLHGRQTEYMYEGIREELGADHNLLAGGKKWSFAMAARTLNCTGNALM
TRYLASKRKAERLTWTDECLLLSEAPMMVHREKLREASSFVEGIRDERKY
LLVMTDFCNYEVWTEVEVSERNGVYRPLVVKHANQEVLRSWQDLLETSTR
TPLKDLQIE*
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mRNA from alignment at tig00000069_pilon:59446..61275-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5015.t1 ID=Ggra5015.t1|Name=Ggra5015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1830bp|location=Sequence derived from alignment at tig00000069_pilon:59446..61275- (Gracilaria gracilis GNS1m male)
ATGGATATAAACCGTATCTATGATGAAGAAGTCAAAAAATACGAGGAGGA
AAGGACTAAATGTGAAGACGTGGCTTTTGTTGAGAAACAGACACCAACAG
GCAAGTCCTACAAACGAGCACTTGGAGCTTCCGCCACATGGTACGTCATG
GCTCTTGGATTTTCAGTGGTTATGAACTATGGTCTAGGCGCTGCAGTCGC
TGGGACTATAGCAACACCTATACTAGGCGTGTTGGGCACGATTGCTGTTG
TGGCGGGTGTTGTAACAACCTTGACGAGCGGAGCCGCAAACGTAGTACGA
CACGCCGGGCTTGGATGGGCCCCTTACACATTCAACCGGAATTACGTGGA
GAAAACTTTCAAGTCAAGCAATACTCGTAATATTCGTCAAGCTGCGGCTT
ACGTAGCTTATACTAAGGCCATATTACAACACAAAGCAACTGATGAGAAT
CAGGGGTCTGATTTCTTCAAGATGAAAATTAGCATGATGGATCTATCTAT
CCATGGCGATGACGAGAAGGCGAAACGAATGACTTTCTACAGTCAGTTAG
GGAAGGCAATTTCCGAGGGAGACGCAAATCCATGGTTGAAAGCTTCCGAA
GGGGTAGTTAGCTCGCAGATATCACAAGTTGTTCTCAGAGGTTTGTCGCG
CATTATGAACGCAAACAATCTGACAGAGAGTGTGGACTGTTTACTCGATG
ATGTGAATTGGAAGTCGCTTGGCAAAAAGAAATCGCCCATGACTGGGAAG
TACATTGACCCGGAAGAAAACATCCCGTACGTGGCACTTTCTTACAAACA
GGAAGGAGACACCTTTAAGTTGGGGAGAAGTCAGGCGCGGCAGGCAGTCG
AAAGAGCCGCACTCATAGCGGAGTCCCTGACAGGAAAGAAAGAATTCAGA
ATATGGGTCGACCAACTGGTACACGGTGGCGGGCAAGAATGGGTGGCAAT
AGGTCTATTACCATATTTGCTGATGCCAGTTGTGCAAACTGATCAAGCAA
TCAGCTATACGGCGCCTCGCAGCCGAGAGGAAAGCACTTGGATCTCGCTG
GAGCCCATCAATGCTCTATTACGATACTGGCAGATGCGAGGTGTGCGAAC
TGATCAAGCAAGCTATACGGCGCCTCGCAGCCGAAAGGAAAGCACTTGGA
TCTCACTGGAGCACATCTGTGCATCTGCAGCCACTACTACTCAGCTAACG
AAGACAGGTATATTCATAGACCTAGCAAATACAAGACCTTTATCGGAGTC
TCTCTCTGCTGTGGCAGAAGTACTATCGTGGCACCTGAGGAGTGACAGGA
TTCACTCCACCATTAGAGAGAGTGACGAGAGTTGGCTTTCACTCTGGTGT
AAAGGTGTACTGCACGGCCGACAAACAGAATACATGTACGAAGGTATCAG
AGAAGAATTAGGTGCGGATCACAACTTGCTAGCAGGCGGAAAAAAGTGGT
CATTTGCAATGGCAGCGAGAACATTGAACTGTACGGGCAACGCATTGATG
ACCAGATACCTCGCCTCTAAACGTAAGGCTGAGAGACTGACATGGACAGA
TGAATGTTTGCTACTTAGTGAAGCGCCTATGATGGTACACCGAGAAAAAC
TACGCGAGGCGAGTTCTTTTGTGGAAGGAATTCGTGATGAGCGGAAGTAC
CTTCTTGTAATGACGGATTTTTGCAATTACGAAGTGTGGACTGAGGTTGA
AGTGAGTGAACGCAATGGCGTGTACCGCCCGTTGGTTGTGAAACACGCTA
ACCAAGAAGTCCTACGCTCTTGGCAAGATTTACTCGAGACGAGTACAAGA
ACCCCTCTTAAGGATTTACAAATAGAGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:59446..61275-

>Ggra5015.t1 ID=Ggra5015.t1|Name=Ggra5015.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1830bp|location=Sequence derived from alignment at tig00000069_pilon:59446..61275- (Gracilaria gracilis GNS1m male)
ATGGATATAAACCGTATCTATGATGAAGAAGTCAAAAAATACGAGGAGGA
AAGGACTAAATGTGAAGACGTGGCTTTTGTTGAGAAACAGACACCAACAG
GCAAGTCCTACAAACGAGCACTTGGAGCTTCCGCCACATGGTACGTCATG
GCTCTTGGATTTTCAGTGGTTATGAACTATGGTCTAGGCGCTGCAGTCGC
TGGGACTATAGCAACACCTATACTAGGCGTGTTGGGCACGATTGCTGTTG
TGGCGGGTGTTGTAACAACCTTGACGAGCGGAGCCGCAAACGTAGTACGA
CACGCCGGGCTTGGATGGGCCCCTTACACATTCAACCGGAATTACGTGGA
GAAAACTTTCAAGTCAAGCAATACTCGTAATATTCGTCAAGCTGCGGCTT
ACGTAGCTTATACTAAGGCCATATTACAACACAAAGCAACTGATGAGAAT
CAGGGGTCTGATTTCTTCAAGATGAAAATTAGCATGATGGATCTATCTAT
CCATGGCGATGACGAGAAGGCGAAACGAATGACTTTCTACAGTCAGTTAG
GGAAGGCAATTTCCGAGGGAGACGCAAATCCATGGTTGAAAGCTTCCGAA
GGGGTAGTTAGCTCGCAGATATCACAAGTTGTTCTCAGAGGTTTGTCGCG
CATTATGAACGCAAACAATCTGACAGAGAGTGTGGACTGTTTACTCGATG
ATGTGAATTGGAAGTCGCTTGGCAAAAAGAAATCGCCCATGACTGGGAAG
TACATTGACCCGGAAGAAAACATCCCGTACGTGGCACTTTCTTACAAACA
GGAAGGAGACACCTTTAAGTTGGGGAGAAGTCAGGCGCGGCAGGCAGTCG
AAAGAGCCGCACTCATAGCGGAGTCCCTGACAGGAAAGAAAGAATTCAGA
ATATGGGTCGACCAACTGGTACACGGTGGCGGGCAAGAATGGGTGGCAAT
AGGTCTATTACCATATTTGCTGATGCCAGTTGTGCAAACTGATCAAGCAA
TCAGCTATACGGCGCCTCGCAGCCGAGAGGAAAGCACTTGGATCTCGCTG
GAGCCCATCAATGCTCTATTACGATACTGGCAGATGCGAGGTGTGCGAAC
TGATCAAGCAAGCTATACGGCGCCTCGCAGCCGAAAGGAAAGCACTTGGA
TCTCACTGGAGCACATCTGTGCATCTGCAGCCACTACTACTCAGCTAACG
AAGACAGGTATATTCATAGACCTAGCAAATACAAGACCTTTATCGGAGTC
TCTCTCTGCTGTGGCAGAAGTACTATCGTGGCACCTGAGGAGTGACAGGA
TTCACTCCACCATTAGAGAGAGTGACGAGAGTTGGCTTTCACTCTGGTGT
AAAGGTGTACTGCACGGCCGACAAACAGAATACATGTACGAAGGTATCAG
AGAAGAATTAGGTGCGGATCACAACTTGCTAGCAGGCGGAAAAAAGTGGT
CATTTGCAATGGCAGCGAGAACATTGAACTGTACGGGCAACGCATTGATG
ACCAGATACCTCGCCTCTAAACGTAAGGCTGAGAGACTGACATGGACAGA
TGAATGTTTGCTACTTAGTGAAGCGCCTATGATGGTACACCGAGAAAAAC
TACGCGAGGCGAGTTCTTTTGTGGAAGGAATTCGTGATGAGCGGAAGTAC
CTTCTTGTAATGACGGATTTTTGCAATTACGAAGTGTGGACTGAGGTTGA
AGTGAGTGAACGCAATGGCGTGTACCGCCCGTTGGTTGTGAAACACGCTA
ACCAAGAAGTCCTACGCTCTTGGCAAGATTTACTCGAGACGAGTACAAGA
ACCCCTCTTAAGGATTTACAAATAGAGTAA
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